data_GKC
#

_chem_comp.id                                   GKC
_chem_comp.name                                 "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-(cyclohexylmethoxy)-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H34 O11"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-09-03
_chem_comp.pdbx_modified_date                   2021-02-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       438.467
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GKC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7CTQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GKC  O1   O1   O  0  1  N  N  N  -24.566   -7.353  -57.614   3.289  -0.266   1.426  O1   GKC   1  
GKC  C1   C1   C  0  1  N  N  R  -25.002   -8.553  -58.299   3.136   0.931   0.660  C1   GKC   2  
GKC  C10  C2   C  0  1  N  N  N  -21.363   -9.573  -59.227   0.534  -1.608  -0.974  C10  GKC   3  
GKC  C11  C3   C  0  1  N  N  R  -24.005  -12.613  -60.486  -1.230   1.934   0.646  C11  GKC   4  
GKC  C12  C4   C  0  1  N  N  R  -22.551  -12.547  -60.999  -1.988   1.071  -0.366  C12  GKC   5  
GKC  C13  C5   C  0  1  N  N  N  -22.040  -14.450  -62.405  -4.172   0.224  -0.876  C13  GKC   6  
GKC  C14  C6   C  0  1  N  N  N  -22.490  -15.904  -62.275  -5.594   0.123  -0.321  C14  GKC   7  
GKC  C15  C7   C  0  1  N  N  N  -23.070  -16.119  -60.893  -6.507  -0.512  -1.372  C15  GKC   8  
GKC  C16  C8   C  0  1  N  N  N  -23.573  -16.113  -63.278  -5.589  -0.744   0.940  C16  GKC   9  
GKC  C17  C9   C  0  1  N  N  N  -23.749  -17.473  -60.783  -7.930  -0.613  -0.817  C17  GKC  10  
GKC  C18  C10  C  0  1  N  N  N  -24.860  -17.552  -61.766  -7.924  -1.480   0.444  C18  GKC  11  
GKC  C19  C11  C  0  1  N  N  N  -24.192  -17.492  -63.096  -7.011  -0.846   1.495  C19  GKC  12  
GKC  C2   C12  C  0  1  N  N  R  -26.384   -8.313  -58.995   4.481   1.308   0.033  C2   GKC  13  
GKC  C3   C13  C  0  1  N  N  R  -25.477   -6.944  -56.512   3.705  -1.399   0.661  C3   GKC  14  
GKC  C4   C14  C  0  1  N  N  S  -27.249   -7.339  -58.180   4.977   0.145  -0.831  C4   GKC  15  
GKC  C5   C15  C  0  1  N  N  S  -26.903   -7.504  -56.707   5.073  -1.115   0.035  C5   GKC  16  
GKC  C6   C16  C  0  1  N  N  N  -24.988   -7.283  -55.092   3.807  -2.622   1.576  C6   GKC  17  
GKC  C7   C17  C  0  1  N  N  S  -23.654  -10.400  -59.378   0.826   0.632   0.097  C7   GKC  18  
GKC  C8   C18  C  0  1  N  N  R  -24.579  -11.193  -60.300   0.236   2.041   0.216  C8   GKC  19  
GKC  C9   C19  C  0  1  N  N  R  -22.288  -10.432  -60.039  -0.012  -0.181  -0.894  C9   GKC  20  
GKC  O10  O2   O  0  1  N  N  N  -21.611   -8.203  -59.547  -0.187  -2.339  -1.968  O10  GKC  21  
GKC  O11  O3   O  0  1  N  N  N  -21.961  -13.870  -61.091  -3.345   0.921   0.058  O11  GKC  22  
GKC  O2   O4   O  0  1  N  N  N  -26.270   -7.824  -60.357   4.319   2.472  -0.781  O2   GKC  23  
GKC  O3   O5   O  0  1  N  N  N  -28.643   -7.597  -58.467   6.267   0.459  -1.361  O3   GKC  24  
GKC  O4   O6   O  0  1  N  N  N  -27.806   -6.782  -55.852   5.466  -2.224  -0.777  O4   GKC  25  
GKC  O5   O7   O  0  1  N  N  N  -24.027   -8.994  -59.279   2.172   0.716  -0.373  O5   GKC  26  
GKC  O6   O8   O  0  1  N  N  N  -24.748   -8.685  -54.980   2.508  -2.956   2.070  O6   GKC  27  
GKC  O7   O9   O  0  1  N  N  N  -21.753  -11.761  -60.110  -1.371  -0.214  -0.451  O7   GKC  28  
GKC  O8   O10  O  0  1  N  N  N  -25.947  -11.243  -59.817   0.968   2.783   1.194  O8   GKC  29  
GKC  O9   O11  O  0  1  N  N  N  -24.821  -13.344  -61.431  -1.810   3.239   0.692  O9   GKC  30  
GKC  H1   H1   H  0  1  N  N  N  -25.144   -9.352  -57.557   2.799   1.738   1.309  H1   GKC  31  
GKC  H2   H2   H  0  1  N  N  N  -21.546   -9.742  -58.156   1.591  -1.578  -1.240  H2   GKC  32  
GKC  H3   H3   H  0  1  N  N  N  -20.319   -9.826  -59.465   0.416  -2.096  -0.007  H3   GKC  33  
GKC  H4   H4   H  0  1  N  N  N  -24.011  -13.124  -59.512  -1.288   1.475   1.633  H4   GKC  34  
GKC  H5   H5   H  0  1  N  N  N  -22.560  -12.082  -61.996  -1.964   1.552  -1.344  H5   GKC  35  
GKC  H6   H6   H  0  1  N  N  N  -21.052  -14.410  -62.887  -3.773  -0.777  -1.038  H6   GKC  36  
GKC  H7   H7   H  0  1  N  N  N  -22.767  -13.891  -63.013  -4.189   0.766  -1.821  H7   GKC  37  
GKC  H8   H8   H  0  1  N  N  N  -21.647  -16.587  -62.455  -5.960   1.119  -0.075  H8   GKC  38  
GKC  H9   H9   H  0  1  N  N  N  -22.259  -16.064  -60.152  -6.511   0.105  -2.270  H9   GKC  39  
GKC  H10  H10  H  0  1  N  N  N  -23.809  -15.330  -60.688  -6.141  -1.509  -1.618  H10  GKC  40  
GKC  H11  H11  H  0  1  N  N  N  -23.152  -16.034  -64.291  -5.222  -1.741   0.694  H11  GKC  41  
GKC  H12  H12  H  0  1  N  N  N  -24.348  -15.345  -63.142  -4.938  -0.292   1.689  H12  GKC  42  
GKC  H13  H13  H  0  1  N  N  N  -24.149  -17.601  -59.766  -8.296   0.383  -0.572  H13  GKC  43  
GKC  H14  H14  H  0  1  N  N  N  -23.018  -18.268  -60.992  -8.580  -1.065  -1.566  H14  GKC  44  
GKC  H15  H15  H  0  1  N  N  N  -25.551  -16.705  -61.640  -8.938  -1.552   0.839  H15  GKC  45  
GKC  H16  H16  H  0  1  N  N  N  -25.413  -18.496  -61.652  -7.558  -2.477   0.198  H16  GKC  46  
GKC  H17  H17  H  0  1  N  N  N  -24.933  -17.671  -63.889  -7.007  -1.463   2.393  H17  GKC  47  
GKC  H18  H18  H  0  1  N  N  N  -23.405  -18.259  -63.149  -7.377   0.151   1.740  H18  GKC  48  
GKC  H19  H19  H  0  1  N  N  N  -26.908   -9.280  -59.015   5.206   1.512   0.821  H19  GKC  49  
GKC  H20  H20  H  0  1  N  N  N  -25.565   -5.848  -56.557   2.978  -1.594  -0.126  H20  GKC  50  
GKC  H21  H21  H  0  1  N  N  N  -26.995   -6.313  -58.485   4.278  -0.027  -1.649  H21  GKC  51  
GKC  H22  H22  H  0  1  N  N  N  -26.905   -8.574  -56.451   5.810  -0.961   0.823  H22  GKC  52  
GKC  H23  H23  H  0  1  N  N  N  -24.056   -6.736  -54.888   4.209  -3.464   1.013  H23  GKC  53  
GKC  H24  H24  H  0  1  N  N  N  -25.755   -6.985  -54.362   4.467  -2.395   2.413  H24  GKC  54  
GKC  H25  H25  H  0  1  N  N  N  -23.610  -10.872  -58.385   0.810   0.146   1.072  H25  GKC  55  
GKC  H26  H26  H  0  1  N  N  N  -24.571  -10.702  -61.284   0.299   2.546  -0.747  H26  GKC  56  
GKC  H27  H27  H  0  1  N  N  N  -22.374  -10.008  -61.051   0.038   0.284  -1.879  H27  GKC  57  
GKC  H28  H28  H  0  1  N  N  N  -21.031   -7.649  -59.039   0.107  -3.254  -2.073  H28  GKC  58  
GKC  H29  H29  H  0  1  N  N  N  -27.138   -7.699  -60.723   4.002   3.248  -0.299  H29  GKC  59  
GKC  H30  H30  H  0  1  N  N  N  -29.186   -6.999  -57.967   6.282   1.252  -1.915  H30  GKC  60  
GKC  H31  H31  H  0  1  N  N  N  -27.555   -6.911  -54.945   6.323  -2.110  -1.210  H31  GKC  61  
GKC  H32  H32  H  0  1  N  N  N  -24.447   -8.886  -54.102   2.497  -3.724   2.658  H32  GKC  62  
GKC  H33  H33  H  0  1  N  N  N  -26.278  -10.359  -59.710   0.644   3.685   1.327  H33  GKC  63  
GKC  H34  H34  H  0  1  N  N  N  -25.716  -13.384  -61.114  -2.740   3.247   0.957  H34  GKC  64  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GKC  C16  C19  SING  N  N   1  
GKC  C16  C14  SING  N  N   2  
GKC  C19  C18  SING  N  N   3  
GKC  C13  C14  SING  N  N   4  
GKC  C13  O11  SING  N  N   5  
GKC  C14  C15  SING  N  N   6  
GKC  C18  C17  SING  N  N   7  
GKC  O9   C11  SING  N  N   8  
GKC  O11  C12  SING  N  N   9  
GKC  C12  C11  SING  N  N  10  
GKC  C12  O7   SING  N  N  11  
GKC  C15  C17  SING  N  N  12  
GKC  C11  C8   SING  N  N  13  
GKC  O2   C2   SING  N  N  14  
GKC  C8   O8   SING  N  N  15  
GKC  C8   C7   SING  N  N  16  
GKC  O7   C9   SING  N  N  17  
GKC  C9   C7   SING  N  N  18  
GKC  C9   C10  SING  N  N  19  
GKC  O10  C10  SING  N  N  20  
GKC  C7   O5   SING  N  N  21  
GKC  O5   C1   SING  N  N  22  
GKC  C2   C1   SING  N  N  23  
GKC  C2   C4   SING  N  N  24  
GKC  O3   C4   SING  N  N  25  
GKC  C1   O1   SING  N  N  26  
GKC  C4   C5   SING  N  N  27  
GKC  O1   C3   SING  N  N  28  
GKC  C5   C3   SING  N  N  29  
GKC  C5   O4   SING  N  N  30  
GKC  C3   C6   SING  N  N  31  
GKC  C6   O6   SING  N  N  32  
GKC  C1   H1   SING  N  N  33  
GKC  C10  H2   SING  N  N  34  
GKC  C10  H3   SING  N  N  35  
GKC  C11  H4   SING  N  N  36  
GKC  C12  H5   SING  N  N  37  
GKC  C13  H6   SING  N  N  38  
GKC  C13  H7   SING  N  N  39  
GKC  C14  H8   SING  N  N  40  
GKC  C15  H9   SING  N  N  41  
GKC  C15  H10  SING  N  N  42  
GKC  C16  H11  SING  N  N  43  
GKC  C16  H12  SING  N  N  44  
GKC  C17  H13  SING  N  N  45  
GKC  C17  H14  SING  N  N  46  
GKC  C18  H15  SING  N  N  47  
GKC  C18  H16  SING  N  N  48  
GKC  C19  H17  SING  N  N  49  
GKC  C19  H18  SING  N  N  50  
GKC  C2   H19  SING  N  N  51  
GKC  C3   H20  SING  N  N  52  
GKC  C4   H21  SING  N  N  53  
GKC  C5   H22  SING  N  N  54  
GKC  C6   H23  SING  N  N  55  
GKC  C6   H24  SING  N  N  56  
GKC  C7   H25  SING  N  N  57  
GKC  C8   H26  SING  N  N  58  
GKC  C9   H27  SING  N  N  59  
GKC  O10  H28  SING  N  N  60  
GKC  O2   H29  SING  N  N  61  
GKC  O3   H30  SING  N  N  62  
GKC  O4   H31  SING  N  N  63  
GKC  O6   H32  SING  N  N  64  
GKC  O8   H33  SING  N  N  65  
GKC  O9   H34  SING  N  N  66  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GKC  InChI             InChI                 1.03   "InChI=1S/C19H34O11/c20-6-10-12(22)13(23)15(25)19(28-10)30-17-11(7-21)29-18(16(26)14(17)24)27-8-9-4-2-1-3-5-9/h9-26H,1-8H2/t10-,11-,12-,13+,14-,15-,16-,17-,18-,19-/m1/s1"  
GKC  InChIKey          InChI                 1.03   BBUKPWNPDDHXDR-CRINDFDSSA-N  
GKC  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H](O[C@H]2[C@H](O)[C@@H](O)[C@H](OCC3CCCCC3)O[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"  
GKC  SMILES            CACTVS                3.385  "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)[CH](OCC3CCCCC3)O[CH]2CO)[CH](O)[CH](O)[CH]1O"  
GKC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C1CCC(CC1)CO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O"  
GKC  SMILES            "OpenEye OEToolkits"  2.0.7  "C1CCC(CC1)COC2C(C(C(C(O2)CO)OC3C(C(C(C(O3)CO)O)O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          GKC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{S},6~{R})-2-[(2~{R},3~{S},4~{R},5~{R},6~{R})-6-(cyclohexylmethoxy)-2-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GKC  "Create component"  2020-09-03  PDBJ  
GKC  "Initial release"   2021-02-17  RCSB  
##
