data_GFC
# 
_chem_comp.id                                    GFC 
_chem_comp.name                                  "5'-O-[(S)-{[(S)-[(S)-chloro(fluoro)phosphonomethyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H16 Cl F N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-09-14 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        557.644 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GFC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3JPT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GFC N1     N1     N  0 1 N N N 9.716  8.825  8.103  -8.062 2.264  0.205  N1     GFC 1  
GFC C2     C2     C  0 1 N N N 8.446  8.967  7.583  -7.632 1.567  1.295  C2     GFC 2  
GFC N2     N2     N  0 1 N N N 8.344  9.531  6.359  -8.363 1.627  2.455  N2     GFC 3  
GFC N3     N3     N  0 1 N N N 7.353  8.596  8.217  -6.538 0.839  1.267  N3     GFC 4  
GFC C4     C4     C  0 1 Y N N 7.625  8.090  9.438  -5.794 0.751  0.159  C4     GFC 5  
GFC C5     C5     C  0 1 Y N N 8.847  7.923  10.052 -6.183 1.443  -0.994 C5     GFC 6  
GFC C6     C6     C  0 1 N N N 10.011 8.291  9.356  -7.362 2.223  -0.950 C6     GFC 7  
GFC O6     O6     O  0 1 N N N 11.182 8.175  9.717  -7.738 2.842  -1.931 O6     GFC 8  
GFC N7     N7     N  0 1 Y N N 8.693  7.374  11.318 -5.261 1.179  -1.952 N7     GFC 9  
GFC C8     C8     C  0 1 Y N N 7.404  7.207  11.440 -4.352 0.384  -1.467 C8     GFC 10 
GFC N9     N9     N  0 1 Y N N 6.702  7.605  10.326 -4.639 0.092  -0.165 N9     GFC 11 
GFC PA     PA     P  0 1 N N N 5.057  5.042  14.665 1.740  -1.905 -0.666 PA     GFC 12 
GFC PB     PB     P  0 1 N N N 3.954  2.704  13.726 4.122  -0.145 -0.569 PB     GFC 13 
GFC PG     PG     P  0 1 N N N 3.795  1.141  16.416 6.279  1.797  0.094  PG     GFC 14 
GFC "C1'"  "C1'"  C  0 1 N N R 5.267  7.508  10.094 -3.854 -0.769 0.723  "C1'"  GFC 15 
GFC O1A    O1A    O  0 1 N N N 3.956  5.015  15.652 1.580  -1.670 -2.118 O1A    GFC 16 
GFC O1B    O1B    O  0 1 N N N 3.976  2.267  12.063 3.856  0.625  -1.957 O1B    GFC 17 
GFC O1G    O1G    O  0 1 N N N 3.446  2.730  16.976 6.013  2.567  -1.295 O1G    GFC 18 
GFC "C2'"  "C2'"  C  0 1 N N N 4.842  6.117  9.601  -4.427 -2.199 0.707  "C2'"  GFC 19 
GFC O2A    O2A    O  0 1 N N N 6.681  5.181  15.214 2.335  -3.382 -0.424 O2A    GFC 20 
GFC O2B    O2B    O  0 1 N N N 2.689  3.229  14.303 5.137  -1.201 -0.777 O2B    GFC 21 
GFC O2G    O2G    O  0 1 N N N 4.742  0.110  17.415 6.813  2.844  1.194  O2G    GFC 22 
GFC "C3'"  "C3'"  C  0 1 N N S 4.383  5.453  10.885 -3.243 -3.077 0.236  "C3'"  GFC 23 
GFC "O3'"  "O3'"  O  0 1 N N N 3.439  4.403  10.628 -3.185 -4.297 0.979  "O3'"  GFC 24 
GFC O3A    O3A    O  0 1 N N N 4.957  3.824  13.775 2.751  -0.812 -0.053 O3A    GFC 25 
GFC C3B    C3B    C  0 1 N N S 4.543  1.258  14.742 4.727  1.041  0.677  C3B    GFC 26 
GFC F3B    F3B    F  0 1 N N N 4.351  0.080  14.094 3.767  2.040  0.874  F3B    GFC 27 
GFC CL3B   CL3B   CL 0 0 N N N 6.287  1.458  14.959 5.025  0.179  2.232  CL3B   GFC 28 
GFC O3G    O3G    O  0 1 N N N 2.471  0.479  16.332 7.295  0.740  -0.115 O3G    GFC 29 
GFC "C4'"  "C4'"  C  0 1 N N R 3.721  6.627  11.599 -2.023 -2.176 0.558  "C4'"  GFC 30 
GFC "O4'"  "O4'"  O  0 1 N N N 4.604  7.736  11.337 -2.497 -0.847 0.255  "O4'"  GFC 31 
GFC "C5'"  "C5'"  C  0 1 N N N 3.524  6.469  13.088 -0.835 -2.540 -0.335 "C5'"  GFC 32 
GFC "O5'"  "O5'"  O  0 1 N N N 4.778  6.313  13.744 0.308  -1.778 0.059  "O5'"  GFC 33 
GFC HN1    HN1    H  0 1 N N N 10.483 9.128  7.538  -8.876 2.788  0.258  HN1    GFC 34 
GFC HN2    HN2    H  0 1 N N N 7.444  9.663  5.943  -9.173 2.160  2.491  HN2    GFC 35 
GFC HN2A   HN2A   H  0 0 N N N 9.168  9.816  5.870  -8.070 1.137  3.239  HN2A   GFC 36 
GFC H8     H8     H  0 1 N N N 6.937  6.799  12.324 -3.497 0.012  -2.013 H8     GFC 37 
GFC "H1'"  "H1'"  H  0 1 N N N 5.002  8.247  9.323  -3.876 -0.372 1.738  "H1'"  GFC 38 
GFC "H2'"  "H2'"  H  0 1 N N N 4.036  6.172  8.854  -4.747 -2.493 1.707  "H2'"  GFC 39 
GFC "H2'A" "H2'A" H  0 0 N N N 5.675  5.574  9.130  -5.257 -2.270 0.004  "H2'A" GFC 40 
GFC "H3'"  "H3'"  H  0 1 N N N 5.189  4.967  11.454 -3.308 -3.278 -0.833 "H3'"  GFC 41 
GFC "HO3'" "HO3'" H  0 0 N N N 3.172  4.008  11.450 -3.969 -4.854 0.881  "HO3'" GFC 42 
GFC "H4'"  "H4'"  H  0 1 N N N 2.694  6.745  11.222 -1.753 -2.257 1.610  "H4'"  GFC 43 
GFC "H5'"  "H5'"  H  0 1 N N N 3.020  7.364  13.482 -0.615 -3.603 -0.232 "H5'"  GFC 44 
GFC "H5'A" "H5'A" H  0 0 N N N 2.905  5.579  13.277 -1.079 -2.319 -1.374 "H5'A" GFC 45 
GFC H13    H13    H  0 1 N N N 3.119  2.423  11.683 3.200  1.333  -1.895 H13    GFC 46 
GFC H14    H14    H  0 1 N N N 2.509  2.823  17.102 5.357  3.274  -1.233 H14    GFC 47 
GFC H15    H15    H  0 1 N N N 6.692  5.229  16.163 2.466  -3.605 0.508  H15    GFC 48 
GFC H16    H16    H  0 1 N N N 4.220  -0.637 17.685 7.638  3.286  0.950  H16    GFC 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GFC N1    C2     SING N N 1  
GFC N1    C6     SING N N 2  
GFC N1    HN1    SING N N 3  
GFC C2    N2     SING N N 4  
GFC C2    N3     DOUB N N 5  
GFC N2    HN2    SING N N 6  
GFC N2    HN2A   SING N N 7  
GFC N3    C4     SING N N 8  
GFC C4    C5     DOUB Y N 9  
GFC C4    N9     SING Y N 10 
GFC C5    C6     SING N N 11 
GFC C5    N7     SING Y N 12 
GFC C6    O6     DOUB N N 13 
GFC N7    C8     DOUB Y N 14 
GFC C8    N9     SING Y N 15 
GFC C8    H8     SING N N 16 
GFC N9    "C1'"  SING N N 17 
GFC PA    O1A    DOUB N N 18 
GFC PA    O2A    SING N N 19 
GFC PA    O3A    SING N N 20 
GFC PA    "O5'"  SING N N 21 
GFC PB    O1B    SING N N 22 
GFC PB    O2B    DOUB N N 23 
GFC PB    O3A    SING N N 24 
GFC PB    C3B    SING N N 25 
GFC PG    O1G    SING N N 26 
GFC PG    O2G    SING N N 27 
GFC PG    C3B    SING N N 28 
GFC PG    O3G    DOUB N N 29 
GFC "C1'" "C2'"  SING N N 30 
GFC "C1'" "O4'"  SING N N 31 
GFC "C1'" "H1'"  SING N N 32 
GFC "C2'" "C3'"  SING N N 33 
GFC "C2'" "H2'"  SING N N 34 
GFC "C2'" "H2'A" SING N N 35 
GFC "C3'" "O3'"  SING N N 36 
GFC "C3'" "C4'"  SING N N 37 
GFC "C3'" "H3'"  SING N N 38 
GFC "O3'" "HO3'" SING N N 39 
GFC C3B   F3B    SING N N 40 
GFC C3B   CL3B   SING N N 41 
GFC "C4'" "O4'"  SING N N 42 
GFC "C4'" "C5'"  SING N N 43 
GFC "C4'" "H4'"  SING N N 44 
GFC "C5'" "O5'"  SING N N 45 
GFC "C5'" "H5'"  SING N N 46 
GFC "C5'" "H5'A" SING N N 47 
GFC O1B   H13    SING N N 48 
GFC O1G   H14    SING N N 49 
GFC O2A   H15    SING N N 50 
GFC O2G   H16    SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GFC SMILES           ACDLabs              11.02 "O=P(O)(O)C(Cl)(F)P(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" 
GFC SMILES_CANONICAL CACTVS               3.352 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)[C@@](F)(Cl)[P](O)(O)=O)O3" 
GFC SMILES           CACTVS               3.352 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)[C](F)(Cl)[P](O)(O)=O)O3" 
GFC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(O)O[P@](=O)([C@](F)(P(=O)(O)O)Cl)O)O)N=C(NC2=O)N" 
GFC SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)OP(=O)(C(F)(P(=O)(O)O)Cl)O)O)N=C(NC2=O)N" 
GFC InChI            InChI                1.03  
"InChI=1S/C11H16ClFN5O12P3/c12-11(13,31(21,22)23)32(24,25)30-33(26,27)28-2-5-4(19)1-6(29-5)18-3-15-7-8(18)16-10(14)17-9(7)20/h3-6,19H,1-2H2,(H,24,25)(H,26,27)(H2,21,22,23)(H3,14,16,17,20)/t4-,5+,6+,11+/m0/s1" 
GFC InChIKey         InChI                1.03  YYWHXOYNXRQZKR-XUSYNCDOSA-N 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GFC "SYSTEMATIC NAME" ACDLabs              11.02 "5'-O-[(S)-{[(S)-[(S)-chloro(fluoro)phosphonomethyl](hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]-2'-deoxyguanosine"                                                 
GFC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(S)-[[[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]-chloro-fluoro-methyl]phosphonic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GFC "Create component"  2009-09-14 RCSB 
GFC "Modify descriptor" 2011-06-04 RCSB 
# 
