data_G7C
# 
_chem_comp.id                                    G7C 
_chem_comp.name                                  "[(2~{S},4~{R})-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)-5-[oxidanyl-[(2~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H47 N O24 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-27 
_chem_comp.pdbx_modified_date                    2022-08-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        783.559 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G7C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QXE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G7C C2  C1  C 0 1 N N R 6.136  -27.202 -63.132 -0.557  4.547  0.838  C2  G7C 1  
G7C C4  C2  C 0 1 N N R 5.565  -25.152 -61.847 0.783   4.648  -1.265 C4  G7C 2  
G7C C5  C3  C 0 1 N N R 4.246  -25.823 -61.479 0.484   3.159  -1.468 C5  G7C 3  
G7C C6  C4  C 0 1 N N N 7.150  -28.307 -63.372 -1.748  5.142  1.593  C6  G7C 4  
G7C C7  C5  C 0 1 N N R 2.099  -28.809 -62.289 -0.094  0.364  0.923  C7  G7C 5  
G7C C8  C6  C 0 1 N N S 1.302  -28.638 -63.568 -1.336  -0.528 0.942  C8  G7C 6  
G7C C9  C7  C 0 1 N N R 3.061  -30.031 -62.304 1.161   -0.508 1.003  C9  G7C 7  
G7C C10 C8  C 0 1 N N N 3.067  -30.698 -60.951 2.404   0.371  0.847  C10 G7C 8  
G7C C11 C9  C 0 1 N N N 0.493  -27.361 -63.693 -2.591  0.344  0.862  C11 G7C 9  
G7C C12 C10 C 0 1 N N N -3.302 -26.446 -64.756 -7.672  -0.922 0.193  C12 G7C 10 
G7C O14 O1  O 0 1 N N N -5.021 -25.228 -65.893 -8.283  -3.012 1.241  O14 G7C 11 
G7C C15 C11 C 0 1 N N N 7.722  -32.269 -60.941 7.490   -0.879 0.189  C15 G7C 12 
G7C C16 C12 C 0 1 N N S 8.344  -33.347 -61.793 8.191   -2.235 0.094  C16 G7C 13 
G7C C17 C13 C 0 1 N N N 9.050  -32.769 -63.026 9.651   -2.027 -0.316 C17 G7C 14 
G7C C20 C14 C 0 1 N N N -6.807 -27.326 -66.196 -10.514 -3.417 -0.533 C20 G7C 15 
G7C O21 O2  O 0 1 N N N -1.959 -25.980 -61.179 -5.615  0.861  2.023  O21 G7C 16 
G7C O22 O3  O 0 1 N N N -1.252 -25.052 -63.551 -5.329  1.034  -0.479 O22 G7C 17 
G7C C1  C15 C 0 1 N N S 3.838  -26.940 -62.464 0.265   2.500  -0.103 C1  G7C 18 
G7C O1  O4  O 0 1 N N N 4.927  -27.835 -62.649 -0.801  3.163  0.579  O1  G7C 19 
G7C C3  C16 C 0 1 N N S 6.660  -26.166 -62.142 -0.372  5.288  -0.489 C3  G7C 20 
G7C N1  N1  N 0 1 N N N 3.228  -24.803 -61.325 1.615   2.520  -2.144 N1  G7C 21 
G7C O2  O5  O 0 1 N N N 5.923  -24.324 -60.753 0.916   5.286  -2.537 O2  G7C 22 
G7C O3  O6  O 0 1 N N N 7.798  -25.500 -62.693 -0.070  6.661  -0.231 O3  G7C 23 
G7C O4  O7  O 0 1 N N N 2.698  -27.527 -61.881 -0.070  1.123  -0.287 O4  G7C 24 
G7C O5  O8  O 0 1 N N N 4.054  -31.762 -60.937 3.568   -0.456 0.785  O5  G7C 25 
G7C O6  O9  O 0 1 N N N -0.545 -27.332 -62.657 -3.746  -0.491 0.761  O6  G7C 26 
G7C P1  P1  P 0 1 N N N -1.676 -26.184 -62.647 -5.244  0.091  0.658  P1  G7C 27 
G7C O7  O10 O 0 1 N N N -2.996 -26.779 -63.357 -6.277  -1.122 0.428  O7  G7C 28 
G7C C13 C17 C 0 1 N N R -4.794 -26.283 -64.957 -8.359  -2.278 0.018  C13 G7C 29 
G7C C14 C18 C 0 1 N N S -5.482 -27.557 -65.460 -9.826  -2.061 -0.357 C14 G7C 30 
G7C P2  P2  P 0 1 N N N 5.357  -31.556 -60.016 5.056   0.135  0.622  P2  G7C 31 
G7C O8  O11 O 0 1 N N N 6.385  -32.674 -60.536 6.101   -1.078 0.458  O8  G7C 32 
G7C O9  O12 O 0 1 N N N 6.890  -28.955 -64.615 -1.850  4.529  2.880  O9  G7C 33 
G7C O10 O13 O 0 1 N N N 2.704  -31.088 -63.196 1.202   -1.169 2.270  O10 G7C 34 
G7C O11 O14 O 0 1 N N N 0.391  -29.737 -63.512 -1.360  -1.287 2.152  O11 G7C 35 
G7C O12 O15 O 0 1 N N N 9.249  -34.094 -60.972 8.142   -2.887 1.364  O12 G7C 36 
G7C O17 O16 O 0 1 N N N -5.716 -28.407 -64.341 -9.902  -1.327 -1.581 O17 G7C 37 
G7C O20 O17 O 0 1 N N N 4.949  -31.865 -58.602 5.437   0.998  1.927  O20 G7C 38 
G7C O23 O18 O 0 1 N N N 5.979  -30.219 -60.330 5.114   1.002  -0.577 O23 G7C 39 
G7C C22 C19 C 0 1 N N N 2.287  -24.857 -60.370 1.422   1.400  -2.868 C22 G7C 40 
G7C C23 C20 C 0 1 N N N 1.085  -23.993 -60.605 2.586   0.742  -3.564 C23 G7C 41 
G7C O24 O19 O 0 1 N N N 2.385  -25.599 -59.386 0.312   0.920  -2.959 O24 G7C 42 
G7C H1  H1  H 0 1 N N N 5.932  -26.699 -64.089 0.345   4.650  1.441  H1  G7C 43 
G7C H2  H2  H 0 1 N N N 5.405  -24.538 -62.746 1.709   4.760  -0.702 H2  G7C 44 
G7C H3  H3  H 0 1 N N N 4.393  -26.303 -60.500 -0.414  3.047  -2.075 H3  G7C 45 
G7C H4  H4  H 0 1 N N N 7.084  -29.044 -62.558 -1.602  6.216  1.712  H4  G7C 46 
G7C H5  H5  H 0 1 N N N 8.161  -27.874 -63.393 -2.663  4.960  1.030  H5  G7C 47 
G7C H6  H6  H 0 1 N N N 1.354  -29.048 -61.516 -0.120  1.042  1.777  H6  G7C 48 
G7C H7  H7  H 0 1 N N N 1.974  -28.733 -64.434 -1.310  -1.206 0.088  H7  G7C 49 
G7C H8  H8  H 0 1 N N N 4.076  -29.672 -62.531 1.139   -1.251 0.206  H8  G7C 50 
G7C H9  H9  H 0 1 N N N 3.317  -29.956 -60.178 2.323   0.954  -0.070 H9  G7C 51 
G7C H10 H10 H 0 1 N N N 2.072  -31.119 -60.746 2.482   1.045  1.701  H10 G7C 52 
G7C H11 H11 H 0 1 N N N 1.158  -26.493 -63.570 -2.664  0.959  1.759  H11 G7C 53 
G7C H12 H12 H 0 1 N N N 0.021  -27.323 -64.686 -2.531  0.988  -0.016 H12 G7C 54 
G7C H13 H13 H 0 1 N N N -2.937 -27.254 -65.407 -8.112  -0.399 1.042  H13 G7C 55 
G7C H14 H14 H 0 1 N N N -2.798 -25.505 -65.021 -7.806  -0.327 -0.710 H14 G7C 56 
G7C H15 H15 H 0 1 N N N -4.597 -24.435 -65.586 -8.708  -2.572 1.991  H15 G7C 57 
G7C H16 H16 H 0 1 N N N 8.342  -32.107 -60.047 7.936   -0.295 0.995  H16 G7C 58 
G7C H17 H17 H 0 1 N N N 7.662  -31.335 -61.519 7.604   -0.343 -0.753 H17 G7C 59 
G7C H18 H18 H 0 1 N N N 7.542  -34.012 -62.144 7.689   -2.852 -0.651 H18 G7C 60 
G7C H19 H19 H 0 1 N N N 9.834  -32.112 -62.713 10.153  -1.410 0.429  H19 G7C 61 
G7C H22 H22 H 0 1 N N N -6.641 -26.688 -67.039 -10.535 -3.940 0.423  H22 G7C 62 
G7C H25 H25 H 0 1 N N N -1.827 -25.066 -60.955 -5.580  0.303  2.811  H25 G7C 63 
G7C H26 H26 H 0 1 N N N 3.572  -26.472 -63.423 1.178   2.576  0.488  H26 G7C 64 
G7C H27 H27 H 0 1 N N N 6.935  -26.676 -61.207 -1.288  5.219  -1.076 H27 G7C 65 
G7C H28 H28 H 0 1 N N N 3.227  -24.027 -61.956 2.503   2.903  -2.071 H28 G7C 66 
G7C H29 H29 H 0 1 N N N 5.227  -23.700 -60.587 1.106   6.232  -2.484 H29 G7C 67 
G7C H30 H30 H 0 1 N N N 8.120  -24.856 -62.073 -0.758  7.128  0.263  H30 G7C 68 
G7C H31 H31 H 0 1 N N N -5.243 -26.014 -63.990 -7.861  -2.838 -0.774 H31 G7C 69 
G7C H32 H32 H 0 1 N N N -4.794 -28.058 -66.157 -10.325 -1.501 0.434  H32 G7C 70 
G7C H33 H33 H 0 1 N N N 7.530  -29.643 -64.754 -2.585  4.859  3.415  H33 G7C 71 
G7C H34 H34 H 0 1 N N N 3.347  -31.785 -63.135 1.223   -0.568 3.027  H34 G7C 72 
G7C H35 H35 H 0 1 N N N 0.878  -30.549 -63.433 -1.385  -0.747 2.954  H35 G7C 73 
G7C H36 H36 H 0 1 N N N 8.783  -34.438 -60.219 8.571   -2.394 2.077  H36 G7C 74 
G7C H37 H37 H 0 1 N N N -4.899 -28.555 -63.879 -9.478  -1.767 -2.331 H37 G7C 75 
G7C H38 H38 H 0 1 N N N 5.150  -31.123 -58.044 5.419   0.493  2.751  H38 G7C 76 
G7C H39 H39 H 0 1 N N N 0.362  -24.140 -59.789 3.335   0.453  -2.826 H39 G7C 77 
G7C H40 H40 H 0 1 N N N 1.393  -22.937 -60.637 2.238   -0.144 -4.095 H40 G7C 78 
G7C H41 H41 H 0 1 N N N 0.618  -24.267 -61.562 3.027   1.442  -4.274 H41 G7C 79 
G7C C18 C21 C 0 1 N N N ?      ?       ?       -11.945 -3.203 -1.028 C18 G7C 80 
G7C C21 C22 C 0 1 N N N ?      ?       ?       10.352  -3.384 -0.412 C21 G7C 81 
G7C C25 C25 C 0 1 N N N ?      ?       ?       11.811  -3.176 -0.822 C25 G7C 82 
G7C O13 O20 O 0 1 N N N ?      ?       ?       -9.791  -4.197 -1.487 O13 G7C 83 
G7C O16 O21 O 0 1 N N N ?      ?       ?       -12.624 -4.459 -1.081 O16 G7C 84 
G7C O19 O22 O 0 1 N N N ?      ?       ?       9.700   -1.375 -1.587 O19 G7C 85 
G7C O26 O26 O 0 1 N N N ?      ?       ?       10.302  -4.036 0.859  O26 G7C 86 
G7C O29 O29 O 0 1 N N N ?      ?       ?       12.435  -4.445 -1.024 O29 G7C 87 
G7C H20 H20 H 0 1 N N N ?      ?       ?       -12.470 -2.534 -0.345 H20 G7C 88 
G7C H21 H21 H 0 1 N N N ?      ?       ?       -11.923 -2.760 -2.024 H21 G7C 89 
G7C H23 H23 H 0 1 N N N ?      ?       ?       9.849   -4.001 -1.156 H23 G7C 90 
G7C H24 H24 H 0 1 N N N ?      ?       ?       11.850  -2.600 -1.747 H24 G7C 91 
G7C H42 H42 H 0 1 N N N ?      ?       ?       12.336  -2.634 -0.035 H42 G7C 92 
G7C H43 H43 H 0 1 N N N ?      ?       ?       -9.732  -3.792 -2.363 H43 G7C 93 
G7C H44 H44 H 0 1 N N N ?      ?       ?       -13.539 -4.399 -1.388 H44 G7C 94 
G7C H45 H45 H 0 1 N N N ?      ?       ?       9.271   -1.868 -2.299 H45 G7C 95 
G7C H46 H46 H 0 1 N N N ?      ?       ?       10.731  -3.542 1.571  H46 G7C 96 
G7C H47 H47 H 0 1 N N N ?      ?       ?       13.364  -4.390 -1.286 H47 G7C 97 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G7C C20 C14 SING N N 1  
G7C O14 C13 SING N N 2  
G7C C14 C13 SING N N 3  
G7C C14 O17 SING N N 4  
G7C C13 C12 SING N N 5  
G7C C12 O7  SING N N 6  
G7C O9  C6  SING N N 7  
G7C C11 C8  SING N N 8  
G7C C11 O6  SING N N 9  
G7C C8  O11 SING N N 10 
G7C C8  C7  SING N N 11 
G7C O22 P1  DOUB N N 12 
G7C C6  C2  SING N N 13 
G7C O7  P1  SING N N 14 
G7C O10 C9  SING N N 15 
G7C C2  O1  SING N N 16 
G7C C2  C3  SING N N 17 
G7C C17 C16 SING N N 18 
G7C O3  C3  SING N N 19 
G7C O6  P1  SING N N 20 
G7C O1  C1  SING N N 21 
G7C P1  O21 SING N N 22 
G7C C1  O4  SING N N 23 
G7C C1  C5  SING N N 24 
G7C C9  C7  SING N N 25 
G7C C9  C10 SING N N 26 
G7C C7  O4  SING N N 27 
G7C C3  C4  SING N N 28 
G7C C4  C5  SING N N 29 
G7C C4  O2  SING N N 30 
G7C C16 O12 SING N N 31 
G7C C16 C15 SING N N 32 
G7C C5  N1  SING N N 33 
G7C N1  C22 SING N N 34 
G7C C10 O5  SING N N 35 
G7C C15 O8  SING N N 36 
G7C O5  P2  SING N N 37 
G7C C23 C22 SING N N 38 
G7C O8  P2  SING N N 39 
G7C C22 O24 DOUB N N 40 
G7C O23 P2  DOUB N N 41 
G7C P2  O20 SING N N 42 
G7C C2  H1  SING N N 43 
G7C C4  H2  SING N N 44 
G7C C5  H3  SING N N 45 
G7C C6  H4  SING N N 46 
G7C C6  H5  SING N N 47 
G7C C7  H6  SING N N 48 
G7C C8  H7  SING N N 49 
G7C C9  H8  SING N N 50 
G7C C10 H9  SING N N 51 
G7C C10 H10 SING N N 52 
G7C C11 H11 SING N N 53 
G7C C11 H12 SING N N 54 
G7C C12 H13 SING N N 55 
G7C C12 H14 SING N N 56 
G7C O14 H15 SING N N 57 
G7C C15 H16 SING N N 58 
G7C C15 H17 SING N N 59 
G7C C16 H18 SING N N 60 
G7C C17 H19 SING N N 61 
G7C C20 H22 SING N N 62 
G7C O21 H25 SING N N 63 
G7C C1  H26 SING N N 64 
G7C C3  H27 SING N N 65 
G7C N1  H28 SING N N 66 
G7C O2  H29 SING N N 67 
G7C O3  H30 SING N N 68 
G7C C13 H31 SING N N 69 
G7C C14 H32 SING N N 70 
G7C O9  H33 SING N N 71 
G7C O10 H34 SING N N 72 
G7C O11 H35 SING N N 73 
G7C O12 H36 SING N N 74 
G7C O17 H37 SING N N 75 
G7C O20 H38 SING N N 76 
G7C C23 H39 SING N N 77 
G7C C23 H40 SING N N 78 
G7C C23 H41 SING N N 79 
G7C C18 C20 SING N N 80 
G7C C21 C17 SING N N 81 
G7C C25 C21 SING N N 82 
G7C O13 C20 SING N N 83 
G7C O16 C18 SING N N 84 
G7C O19 C17 SING N N 85 
G7C O26 C21 SING N N 86 
G7C C25 O29 SING N N 87 
G7C C18 H20 SING N N 88 
G7C C18 H21 SING N N 89 
G7C C21 H23 SING N N 90 
G7C C25 H24 SING N N 91 
G7C C25 H42 SING N N 92 
G7C O13 H43 SING N N 93 
G7C O16 H44 SING N N 94 
G7C O19 H45 SING N N 95 
G7C O26 H46 SING N N 96 
G7C O29 H47 SING N N 97 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G7C InChI            InChI                1.06  "InChI=1S/C23H47NO24P2/c1-9(28)24-17-21(38)20(37)16(4-27)47-23(17)48-22(14(33)7-45-49(39,40)43-5-12(31)18(35)10(29)2-25)15(34)8-46-50(41,42)44-6-13(32)19(36)11(30)3-26/h10-23,25-27,29-38H,2-8H2,1H3,(H,24,28)(H,39,40)(H,41,42)/t10?,11?,12-,13+,14+,15-,16-,17-,18+,19?,20-,21-,22+,23+/m1/s1" 
G7C InChIKey         InChI                1.06  UQOCSXCRLULBKU-APIFBWIWSA-N                                                                                                                                                                                                                                                                       
G7C SMILES_CANONICAL CACTVS               3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1O[C@@H]([C@@H](O)CO[P](O)(=O)OC[C@@H](O)[C@@H](O)C(O)CO)[C@H](O)CO[P](O)(=O)OC[C@H](O)C(O)C(O)CO"                                                                                                                                                
G7C SMILES           CACTVS               3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1O[CH]([CH](O)CO[P](O)(=O)OC[CH](O)[CH](O)C(O)CO)[CH](O)CO[P](O)(=O)OC[CH](O)C(O)C(O)CO"                                                                                                                                                                  
G7C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1OC([C@@H](COP(=O)(O)OC[C@@H]([C@H]([C@H](CO)O)O)O)O)[C@H](COP(=O)(O)OC[C@H]([C@H]([C@H](CO)O)O)O)O)CO)O)O"                                                                                                                                               
G7C SMILES           "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1C(C(C(OC1OC(C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)C(COP(=O)(O)OCC(C(C(CO)O)O)O)O)CO)O)O"                                                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           G7C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S},4~{R})-3-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-2,4-bis(oxidanyl)-5-[oxidanyl-[(2~{S},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentoxy]phosphoryl]oxy-pentyl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G7C "Create component"  2022-01-27 PDBE 
G7C "Modify descriptor" 2022-08-22 RCSB 
G7C "Initial release"   2022-08-31 RCSB 
# 
