data_CXC
#

_chem_comp.id                                   CXC
_chem_comp.name                                 "[[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H17 N6 O13 P3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-24
_chem_comp.pdbx_modified_date                   2022-03-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       522.196
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    CXC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6K4B
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CXC  "O5'"  O1   O  0  1  N  N  N  48.588  47.731  -23.548   0.919   1.212   0.200  "O5'"  CXC   1  
CXC  "C5'"  C1   C  0  1  N  N  N  49.653  48.254  -22.792  -0.131   2.155   0.423  "C5'"  CXC   2  
CXC  "C4'"  C2   C  0  1  N  N  R  50.473  49.411  -23.424  -1.275   1.886  -0.556  "C4'"  CXC   3  
CXC  "O4'"  O2   O  0  1  N  N  N  51.340  50.028  -22.420  -1.882   0.616  -0.261  "O4'"  CXC   4  
CXC  "C1'"  C3   C  0  1  N  N  R  52.768  49.684  -22.774  -3.290   0.743  -0.555  "C1'"  CXC   5  
CXC  N1     N1   N  0  1  Y  N  N  57.176  47.498  -21.279  -7.661  -2.065  -0.349  N1     CXC   6  
CXC  C6     C4   C  0  1  Y  N  N  56.194  46.599  -21.423  -6.869  -2.368   0.674  C6     CXC   7  
CXC  C2     C5   C  0  1  Y  N  N  56.900  48.794  -21.520  -7.302  -1.159  -1.248  C2     CXC   8  
CXC  N3     N2   N  0  1  Y  N  N  55.655  49.147  -21.894  -6.149  -0.512  -1.179  N3     CXC   9  
CXC  C4     C6   C  0  1  Y  N  N  54.680  48.231  -22.049  -5.297  -0.754  -0.188  C4     CXC  10  
CXC  C5     C7   C  0  1  Y  N  N  54.965  46.951  -21.802  -5.635  -1.706   0.788  C5     CXC  11  
CXC  "C2'"  C8   C  0  1  N  N  R  52.709  49.852  -24.272  -3.641   2.162  -0.038  "C2'"  CXC  12  
CXC  "O2'"  O3   O  0  1  N  N  N  52.287  51.179  -24.620  -4.782   2.685  -0.720  "O2'"  CXC  13  
CXC  "C3'"  C9   C  0  1  N  N  S  51.554  48.960  -24.492  -2.366   2.963  -0.397  "C3'"  CXC  14  
CXC  "O3'"  O4   O  0  1  N  N  N  51.112  49.134  -25.858  -2.550   3.673  -1.623  "O3'"  CXC  15  
CXC  C8     C10  C  0  1  Y  N  N  52.908  47.100  -22.378  -3.681  -0.918   1.305  C8     CXC  16  
CXC  N2     N3   N  0  1  N  N  N  57.832  49.747  -21.389  -8.163  -0.879  -2.297  N2     CXC  17  
CXC  N6     N4   N  0  1  N  N  N  56.376  45.311  -21.201  -7.252  -3.315   1.608  N6     CXC  18  
CXC  N7     N5   N  0  1  Y  N  N  53.859  46.247  -22.003  -4.606  -1.757   1.669  N7     CXC  19  
CXC  N9     N6   N  0  1  Y  N  N  53.398  48.340  -22.417  -4.061  -0.274   0.164  N9     CXC  20  
CXC  O1A    O5   O  0  1  N  N  N  50.337  46.063  -24.567   1.954   0.843   2.588  O1A    CXC  21  
CXC  O1B    O6   O  0  1  N  N  N  48.104  43.224  -25.837   5.105  -1.000   1.999  O1B    CXC  22  
CXC  O1G    O7   O  0  1  N  N  N  44.647  45.753  -28.006   6.704  -2.707  -2.210  O1G    CXC  23  
CXC  O2A    O8   O  0  1  N  N  N  48.905  47.595  -26.054   2.921   2.535   0.984  O2A    CXC  24  
CXC  O2B    O9   O  0  1  N  N  N  49.474  45.137  -26.825   5.603   1.076   0.653  O2B    CXC  25  
CXC  O2G    O10  O  0  1  N  N  N  46.192  47.184  -26.594   7.438  -0.194  -1.975  O2G    CXC  26  
CXC  O3A    O11  O  0  1  N  N  N  47.967  45.601  -24.971   3.287   0.096   0.448  O3A    CXC  27  
CXC  O3B    O12  O  0  1  N  N  N  46.781  44.928  -27.215   5.376  -1.094  -0.614  O3B    CXC  28  
CXC  O3G    O13  O  0  1  N  N  N  46.827  46.553  -28.959   7.730  -1.832  -0.077  O3G    CXC  29  
CXC  PA     P1   P  0  1  N  N  N  49.057  46.770  -24.829   2.284   1.201   1.053  PA     CXC  30  
CXC  PB     P2   P  0  1  N  N  N  48.183  44.635  -26.261   4.859  -0.203   0.622  PB     CXC  31  
CXC  PG     P3   P  0  1  N  N  N  45.989  46.326  -27.776   6.832  -1.465  -1.195  PG     CXC  32  
CXC  H1     H1   H  0  1  N  N  N  49.235  48.624  -21.844  -0.496   2.057   1.445  H1     CXC  33  
CXC  H2     H2   H  0  1  N  N  N  50.350  47.428  -22.587   0.250   3.165   0.268  H2     CXC  34  
CXC  H3     H3   H  0  1  N  N  N  49.795  50.150  -23.875  -0.897   1.887  -1.578  H3     CXC  35  
CXC  H4     H4   H  0  1  N  N  N  53.416  50.475  -22.370  -3.466   0.669  -1.628  H4     CXC  36  
CXC  H5     H5   H  0  1  N  N  N  53.626  49.520  -24.780  -3.804   2.153   1.040  H5     CXC  37  
CXC  H6     H6   H  0  1  N  N  N  53.007  51.785  -24.491  -5.041   3.571  -0.431  H6     CXC  38  
CXC  H7     H7   H  0  1  N  N  N  51.833  47.914  -24.300  -2.108   3.651   0.409  H7     CXC  39  
CXC  H8     H8   H  0  1  N  N  N  50.329  48.617  -26.006  -3.264   4.324  -1.597  H8     CXC  40  
CXC  H9     H9   H  0  1  N  N  N  51.890  46.828  -22.616  -2.751  -0.754   1.829  H9     CXC  41  
CXC  H10    H10  H  0  1  N  N  N  57.431  50.638  -21.604  -9.012  -1.344  -2.364  H10    CXC  42  
CXC  H11    H11  H  0  1  N  N  N  58.172  49.753  -20.449  -7.917  -0.219  -2.964  H11    CXC  43  
CXC  H12    H12  H  0  1  N  N  N  57.323  45.151  -20.924  -8.107  -3.766   1.519  H12    CXC  44  
CXC  H13    H13  H  0  1  N  N  N  55.760  45.008  -20.474  -6.666  -3.529   2.351  H13    CXC  45  
CXC  H14    H14  H  0  1  N  N  N  50.948  46.241  -25.272   1.535  -0.020   2.709  H14    CXC  46  
CXC  H15    H15  H  0  1  N  N  N  48.940  42.799  -25.991   4.646  -1.850   2.048  H15    CXC  47  
CXC  H16    H16  H  0  1  N  N  N  44.519  45.609  -28.936   7.545  -2.986  -2.599  H16    CXC  48  
CXC  H17    H17  H  0  1  N  N  N  46.885  47.809  -26.771   6.900   0.102  -2.722  H17    CXC  49  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CXC  O3G    PG     DOUB  N  N   1  
CXC  O1G    PG     SING  N  N   2  
CXC  PG     O3B    SING  N  N   3  
CXC  PG     O2G    SING  N  N   4  
CXC  O3B    PB     SING  N  N   5  
CXC  O2B    PB     DOUB  N  N   6  
CXC  PB     O1B    SING  N  N   7  
CXC  PB     O3A    SING  N  N   8  
CXC  O2A    PA     DOUB  N  N   9  
CXC  "O3'"  "C3'"  SING  N  N  10  
CXC  O3A    PA     SING  N  N  11  
CXC  PA     O1A    SING  N  N  12  
CXC  PA     "O5'"  SING  N  N  13  
CXC  "O2'"  "C2'"  SING  N  N  14  
CXC  "C3'"  "C2'"  SING  N  N  15  
CXC  "C3'"  "C4'"  SING  N  N  16  
CXC  "C2'"  "C1'"  SING  N  N  17  
CXC  "O5'"  "C5'"  SING  N  N  18  
CXC  "C4'"  "C5'"  SING  N  N  19  
CXC  "C4'"  "O4'"  SING  N  N  20  
CXC  "C1'"  "O4'"  SING  N  N  21  
CXC  "C1'"  N9     SING  N  N  22  
CXC  N9     C8     SING  Y  N  23  
CXC  N9     C4     SING  Y  N  24  
CXC  C8     N7     DOUB  Y  N  25  
CXC  C4     N3     DOUB  Y  N  26  
CXC  C4     C5     SING  Y  N  27  
CXC  N7     C5     SING  Y  N  28  
CXC  N3     C2     SING  Y  N  29  
CXC  C5     C6     DOUB  Y  N  30  
CXC  C2     N2     SING  N  N  31  
CXC  C2     N1     DOUB  Y  N  32  
CXC  C6     N1     SING  Y  N  33  
CXC  C6     N6     SING  N  N  34  
CXC  "C5'"  H1     SING  N  N  35  
CXC  "C5'"  H2     SING  N  N  36  
CXC  "C4'"  H3     SING  N  N  37  
CXC  "C1'"  H4     SING  N  N  38  
CXC  "C2'"  H5     SING  N  N  39  
CXC  "O2'"  H6     SING  N  N  40  
CXC  "C3'"  H7     SING  N  N  41  
CXC  "O3'"  H8     SING  N  N  42  
CXC  C8     H9     SING  N  N  43  
CXC  N2     H10    SING  N  N  44  
CXC  N2     H11    SING  N  N  45  
CXC  N6     H12    SING  N  N  46  
CXC  N6     H13    SING  N  N  47  
CXC  O1A    H14    SING  N  N  48  
CXC  O1B    H15    SING  N  N  49  
CXC  O1G    H16    SING  N  N  50  
CXC  O2G    H17    SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CXC  InChI             InChI                 1.03   "InChI=1S/C10H17N6O13P3/c11-7-4-8(15-10(12)14-7)16(2-13-4)9-6(18)5(17)3(27-9)1-26-31(22,23)29-32(24,25)28-30(19,20)21/h2-3,5-6,9,17-18H,1H2,(H,22,23)(H,24,25)(H2,19,20,21)(H4,11,12,14,15)/t3-,5-,6-,9-/m1/s1"  
CXC  InChIKey          InChI                 1.03   CABDYDUZLRXGTB-UUOKFMHZSA-N  
CXC  SMILES_CANONICAL  CACTVS                3.385  "Nc1nc(N)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1"  
CXC  SMILES            CACTVS                3.385  "Nc1nc(N)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O)c2n1"  
CXC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N)N"  
CXC  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc2c(nc(nc2n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N)N"  
#
_pdbx_chem_comp_identifier.comp_id          CXC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[[(2~{R},3~{S},4~{R},5~{R})-5-[2,6-bis(azanyl)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CXC  "Create component"  2019-05-24  PDBJ  
CXC  "Initial release"   2022-03-30  RCSB  
##
