data_BKC
#

_chem_comp.id                                   BKC
_chem_comp.name                                 "Bongkrekic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H38 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Bongkrek acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-04-17
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       486.597
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BKC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6GCI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BKC  O3   O1   O  0  1  N  N  N  -19.415  24.912  -10.368   4.643  -0.129   1.764  O3   BKC   1  
BKC  C3   C1   C  0  1  N  N  N  -17.300  29.434   -5.968  -4.263   1.692   0.135  C3   BKC   2  
BKC  C2   C2   C  0  1  N  N  S  -18.792  29.180   -6.178  -4.281   0.206  -0.227  C2   BKC   3  
BKC  C1   C3   C  0  1  N  N  N  -19.015  28.096   -7.235  -3.275  -0.057  -1.349  C1   BKC   4  
BKC  O1   O2   O  0  1  N  N  N  -23.032  25.997   -4.247  11.266  -1.739  -0.981  O1   BKC   5  
BKC  O2   O3   O  0  1  N  N  N  -21.700  26.963   -5.736  10.186  -0.332   0.360  O2   BKC   6  
BKC  C4   C4   C  0  1  N  N  N  -16.646  28.399   -5.109  -2.919   2.053   0.712  C4   BKC   7  
BKC  C5   C5   C  0  1  N  N  N  -15.363  28.113   -5.073  -2.221   3.029   0.187  C5   BKC   8  
BKC  C6   C6   C  0  1  N  N  N  -14.729  27.067   -4.207  -0.876   3.390   0.763  C6   BKC   9  
BKC  C7   C7   C  0  1  N  N  N  -14.210  25.865   -5.020   0.182   3.343  -0.341  C7   BKC  10  
BKC  C8   C8   C  0  1  N  N  N  -15.237  24.783   -5.239   1.526   3.703   0.236  C8   BKC  11  
BKC  C9   C9   C  0  1  N  N  N  -15.975  24.579   -6.326   2.556   2.876   0.088  C9   BKC  12  
BKC  C10  C10  C  0  1  N  N  N  -16.925  23.503   -6.467   3.869   3.229   0.651  C10  BKC  13  
BKC  C11  C11  C  0  1  N  N  N  -17.672  23.224   -7.532   4.921   2.451   0.420  C11  BKC  14  
BKC  C12  C12  C  0  1  N  N  N  -17.810  23.906   -8.868   4.744   1.135  -0.293  C12  BKC  15  
BKC  C13  C13  C  0  1  N  N  R  -19.264  24.370   -9.050   5.369   0.015   0.542  C13  BKC  16  
BKC  C14  C14  C  0  1  N  N  N  -20.267  23.256   -8.814   5.314  -1.277  -0.231  C14  BKC  17  
BKC  C15  C15  C  0  1  N  N  N  -21.189  23.407   -7.864   6.440  -1.836  -0.678  C15  BKC  18  
BKC  C16  C16  C  0  1  N  N  N  -21.391  24.563   -7.064   7.736  -1.281  -0.288  C16  BKC  19  
BKC  C17  C17  C  0  1  N  N  N  -22.278  24.695   -6.072   8.874  -1.779  -0.825  C17  BKC  20  
BKC  C18  C18  C  0  1  N  N  N  -23.186  23.580   -5.628   8.806  -2.905  -1.823  C18  BKC  21  
BKC  C19  C19  C  0  1  N  N  N  -22.325  25.977   -5.279  10.131  -1.242  -0.447  C19  BKC  22  
BKC  C20  C20  C  0  1  N  N  N  -20.160  22.045   -9.697   3.987  -1.939  -0.498  C20  BKC  23  
BKC  C21  C21  C  0  1  N  N  N  -20.527  25.804  -10.503   5.258   0.511   2.884  C21  BKC  24  
BKC  C22  C22  C  0  1  N  N  N  -19.481  30.465   -6.528  -5.662  -0.182  -0.688  C22  BKC  25  
BKC  C23  C23  C  0  1  N  N  N  -19.961  30.806   -7.707  -6.344  -1.124  -0.033  C23  BKC  26  
BKC  C24  C24  C  0  1  N  N  N  -20.639  32.022   -8.093  -7.685  -1.501  -0.481  C24  BKC  27  
BKC  C25  C25  C  0  1  N  N  N  -21.041  32.139   -9.383  -8.432  -2.349   0.261  C25  BKC  28  
BKC  C26  C26  C  0  1  N  N  N  -20.901  31.242  -10.611  -8.043  -2.662   1.588  C26  BKC  29  
BKC  O4   O4   O  0  1  N  N  N  -21.424  31.627  -11.682  -7.106  -2.079   2.100  O4   BKC  30  
BKC  O5   O5   O  0  1  N  N  N  -20.229  30.178  -10.504  -8.711  -3.606   2.283  O5   BKC  31  
BKC  C27  C27  C  0  1  N  N  N  -20.890  33.098   -7.069  -8.233  -0.944  -1.770  C27  BKC  32  
BKC  C28  C28  C  0  1  N  N  N  -21.791  32.826   -5.885  -8.856   0.404  -1.510  C28  BKC  33  
BKC  O6   O6   O  0  1  N  N  N  -22.965  32.472   -6.107  -8.855   0.864  -0.393  O6   BKC  34  
BKC  O7   O7   O  0  1  N  N  N  -21.297  32.991   -4.753  -9.412   1.092  -2.519  O7   BKC  35  
BKC  H1   H1   H  0  1  N  N  N  -16.804  29.439   -6.950  -4.446   2.287  -0.760  H1   BKC  36  
BKC  H2   H2   H  0  1  N  N  N  -17.176  30.416   -5.489  -5.041   1.896   0.872  H2   BKC  37  
BKC  H3   H3   H  0  1  N  N  N  -19.209  28.814   -5.228  -4.011  -0.385   0.649  H3   BKC  38  
BKC  H4   H4   H  0  1  N  N  N  -18.492  27.176   -6.934  -2.276   0.224  -1.015  H4   BKC  39  
BKC  H5   H5   H  0  1  N  N  N  -20.092  27.891   -7.329  -3.288  -1.116  -1.607  H5   BKC  40  
BKC  H6   H6   H  0  1  N  N  N  -18.622  28.441   -8.203  -3.545   0.533  -2.225  H6   BKC  41  
BKC  H7   H7   H  0  1  N  N  N  -23.019  26.869   -3.870  12.071  -1.309  -0.663  H7   BKC  42  
BKC  H8   H8   H  0  1  N  N  N  -17.290  27.831   -4.454  -2.530   1.507   1.559  H8   BKC  43  
BKC  H9   H9   H  0  1  N  N  N  -14.711  28.679   -5.722  -2.609   3.575  -0.660  H9   BKC  44  
BKC  H10  H10  H  0  1  N  N  N  -13.884  27.520   -3.668  -0.919   4.395   1.183  H10  BKC  45  
BKC  H11  H11  H  0  1  N  N  N  -15.476  26.708   -3.483  -0.615   2.679   1.548  H11  BKC  46  
BKC  H12  H12  H  0  1  N  N  N  -13.356  25.427   -4.483   0.224   2.338  -0.761  H12  BKC  47  
BKC  H13  H13  H  0  1  N  N  N  -13.877  26.230   -6.003  -0.080   4.053  -1.125  H13  BKC  48  
BKC  H14  H14  H  0  1  N  N  N  -15.391  24.096   -4.420   1.653   4.634   0.769  H14  BKC  49  
BKC  H15  H15  H  0  1  N  N  N  -15.856  25.261   -7.155   2.429   1.946  -0.445  H15  BKC  50  
BKC  H16  H16  H  0  1  N  N  N  -17.043  22.852   -5.614   3.977   4.119   1.253  H16  BKC  51  
BKC  H17  H17  H  0  1  N  N  N  -18.293  22.348   -7.418   5.904   2.763   0.742  H17  BKC  52  
BKC  H18  H18  H  0  1  N  N  N  -17.545  23.201   -9.670   3.681   0.937  -0.429  H18  BKC  53  
BKC  H19  H19  H  0  1  N  N  N  -17.138  24.776   -8.908   5.233   1.180  -1.266  H19  BKC  54  
BKC  H20  H20  H  0  1  N  N  N  -19.457  25.162   -8.312   6.407   0.263   0.762  H20  BKC  55  
BKC  H21  H21  H  0  1  N  N  N  -21.846  22.569   -7.685   6.395  -2.697  -1.328  H21  BKC  56  
BKC  H22  H22  H  0  1  N  N  N  -20.768  25.419   -7.278   7.785  -0.474   0.427  H22  BKC  57  
BKC  H23  H23  H  0  1  N  N  N  -23.821  23.931   -4.801   8.728  -2.494  -2.830  H23  BKC  58  
BKC  H24  H24  H  0  1  N  N  N  -23.821  23.267   -6.470   9.708  -3.513  -1.748  H24  BKC  59  
BKC  H25  H25  H  0  1  N  N  N  -22.580  22.727   -5.289   7.933  -3.524  -1.615  H25  BKC  60  
BKC  H26  H26  H  0  1  N  N  N  -20.940  21.320   -9.422   3.580  -1.571  -1.440  H26  BKC  61  
BKC  H27  H27  H  0  1  N  N  N  -20.292  22.344  -10.747   4.125  -3.019  -0.560  H27  BKC  62  
BKC  H28  H28  H  0  1  N  N  N  -19.170  21.584   -9.568   3.295  -1.707   0.312  H28  BKC  63  
BKC  H29  H29  H  0  1  N  N  N  -20.576  26.176  -11.537   4.700   0.273   3.790  H29  BKC  64  
BKC  H30  H30  H  0  1  N  N  N  -21.457  25.269  -10.262   6.284   0.157   2.986  H30  BKC  65  
BKC  H31  H31  H  0  1  N  N  N  -20.402  26.652   -9.814   5.260   1.590   2.731  H31  BKC  66  
BKC  H32  H32  H  0  1  N  N  N  -19.596  31.185   -5.732  -6.099   0.301  -1.549  H32  BKC  67  
BKC  H33  H33  H  0  1  N  N  N  -19.830  30.076   -8.492  -5.907  -1.607   0.828  H33  BKC  68  
BKC  H34  H34  H  0  1  N  N  N  -21.571  33.059   -9.584  -9.326  -2.789  -0.157  H34  BKC  69  
BKC  H35  H35  H  0  1  N  N  N  -20.193  29.740  -11.346  -8.373  -3.750   3.177  H35  BKC  70  
BKC  H36  H36  H  0  1  N  N  N  -19.909  33.382   -6.661  -7.424  -0.837  -2.493  H36  BKC  71  
BKC  H37  H37  H  0  1  N  N  N  -21.325  33.953   -7.608  -8.988  -1.622  -2.167  H37  BKC  72  
BKC  H38  H38  H  0  1  N  N  N  -21.952  32.806   -4.091  -9.799   1.952  -2.304  H38  BKC  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BKC  O4   C26  DOUB  N  N   1  
BKC  C26  O5   SING  N  N   2  
BKC  C26  C25  SING  N  N   3  
BKC  C21  O3   SING  N  N   4  
BKC  O3   C13  SING  N  N   5  
BKC  C20  C14  SING  N  N   6  
BKC  C25  C24  DOUB  N  Z   7  
BKC  C13  C12  SING  N  N   8  
BKC  C13  C14  SING  N  N   9  
BKC  C12  C11  SING  N  N  10  
BKC  C14  C15  DOUB  N  Z  11  
BKC  C24  C23  SING  N  N  12  
BKC  C24  C27  SING  N  N  13  
BKC  C15  C16  SING  N  N  14  
BKC  C23  C22  DOUB  N  E  15  
BKC  C11  C10  DOUB  N  Z  16  
BKC  C1   C2   SING  N  N  17  
BKC  C27  C28  SING  N  N  18  
BKC  C16  C17  DOUB  N  E  19  
BKC  C22  C2   SING  N  N  20  
BKC  C10  C9   SING  N  N  21  
BKC  C9   C8   DOUB  N  E  22  
BKC  C2   C3   SING  N  N  23  
BKC  O6   C28  DOUB  N  N  24  
BKC  C17  C18  SING  N  N  25  
BKC  C17  C19  SING  N  N  26  
BKC  C3   C4   SING  N  N  27  
BKC  C28  O7   SING  N  N  28  
BKC  O2   C19  DOUB  N  N  29  
BKC  C19  O1   SING  N  N  30  
BKC  C8   C7   SING  N  N  31  
BKC  C4   C5   DOUB  N  E  32  
BKC  C5   C6   SING  N  N  33  
BKC  C7   C6   SING  N  N  34  
BKC  C3   H1   SING  N  N  35  
BKC  C3   H2   SING  N  N  36  
BKC  C2   H3   SING  N  N  37  
BKC  C1   H4   SING  N  N  38  
BKC  C1   H5   SING  N  N  39  
BKC  C1   H6   SING  N  N  40  
BKC  O1   H7   SING  N  N  41  
BKC  C4   H8   SING  N  N  42  
BKC  C5   H9   SING  N  N  43  
BKC  C6   H10  SING  N  N  44  
BKC  C6   H11  SING  N  N  45  
BKC  C7   H12  SING  N  N  46  
BKC  C7   H13  SING  N  N  47  
BKC  C8   H14  SING  N  N  48  
BKC  C9   H15  SING  N  N  49  
BKC  C10  H16  SING  N  N  50  
BKC  C11  H17  SING  N  N  51  
BKC  C12  H18  SING  N  N  52  
BKC  C12  H19  SING  N  N  53  
BKC  C13  H20  SING  N  N  54  
BKC  C15  H21  SING  N  N  55  
BKC  C16  H22  SING  N  N  56  
BKC  C18  H23  SING  N  N  57  
BKC  C18  H24  SING  N  N  58  
BKC  C18  H25  SING  N  N  59  
BKC  C20  H26  SING  N  N  60  
BKC  C20  H27  SING  N  N  61  
BKC  C20  H28  SING  N  N  62  
BKC  C21  H29  SING  N  N  63  
BKC  C21  H30  SING  N  N  64  
BKC  C21  H31  SING  N  N  65  
BKC  C22  H32  SING  N  N  66  
BKC  C23  H33  SING  N  N  67  
BKC  C25  H34  SING  N  N  68  
BKC  O5   H35  SING  N  N  69  
BKC  C27  H36  SING  N  N  70  
BKC  C27  H37  SING  N  N  71  
BKC  O7   H38  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BKC  InChI             InChI                 1.03   "InChI=1S/C28H38O7/c1-21(15-18-24(19-26(29)30)20-27(31)32)13-11-9-7-5-6-8-10-12-14-25(35-4)22(2)16-17-23(3)28(33)34/h6,8-12,15-19,21,25H,5,7,13-14,20H2,1-4H3,(H,29,30)(H,31,32)(H,33,34)/b8-6+,11-9+,12-10-,18-15+,22-16-,23-17+,24-19+/t21-,25+/m0/s1"  
BKC  InChIKey          InChI                 1.03   SHCXABJSXUACKU-WUTQZGRKSA-N  
BKC  SMILES_CANONICAL  CACTVS                3.385  "CO[C@H](C/C=C\C=C\CC/C=C/C[C@H](C)/C=C/C(CC(O)=O)=C\C(O)=O)\C(C)=C/C=C(\C)C(O)=O"  
BKC  SMILES            CACTVS                3.385  "CO[CH](CC=CC=CCCC=CC[CH](C)C=CC(CC(O)=O)=CC(O)=O)C(C)=CC=C(C)C(O)=O"  
BKC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H](C/C=C/CC/C=C/C=C\C[C@H](/C(=C\C=C(/C)\C(=O)O)/C)OC)/C=C/C(=C\C(=O)O)/CC(=O)O"  
BKC  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(CC=CCCC=CC=CCC(C(=CC=C(C)C(=O)O)C)OC)C=CC(=CC(=O)O)CC(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          BKC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{E},4~{Z},6~{R},8~{Z},10~{E},14~{E},17~{S},18~{E},20~{Z})-20-(2-hydroxy-2-oxoethyl)-6-methoxy-2,5,17-trimethyl-docosa-2,4,8,10,14,18,20-heptaenedioic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BKC  "Create component"  2018-04-17  EBI   
BKC  "Initial release"   2019-01-09  RCSB  
BKC  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BKC
_pdbx_chem_comp_synonyms.name        "Bongkrek acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
