data_B2C
# 
_chem_comp.id                                    B2C 
_chem_comp.name                                  "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(3-bromo-4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C15 H16 Br N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               Thr,Tyr,Gly 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-04-02 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        398.209 
_chem_comp.one_letter_code                       TYG 
_chem_comp.three_letter_code                     B2C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6OGA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
B2C CB1  CB1 C  0 1 N N R N N N 7.470 8.810  4.141  3.695  2.436  0.869  CB1 B2C 1  
B2C CB2  CB2 C  0 1 N N N N N N 4.393 12.662 2.024  -0.377 -1.318 0.676  CB2 B2C 2  
B2C CG1  CG1 C  0 1 N N N N N N 8.645 7.950  4.599  4.435  3.699  0.424  CG1 B2C 3  
B2C OG1  OG1 O  0 1 N N N N N N 7.840 10.164 4.404  2.422  2.795  1.409  OG1 B2C 4  
B2C CG2  CG2 C  0 1 Y N N N N N 4.743 13.787 2.814  -1.474 -0.433 0.280  CG2 B2C 5  
B2C CD1  CD1 C  0 1 Y N N N N N 5.474 13.605 4.078  -2.799 -0.891 0.322  CD1 B2C 6  
B2C CD2  CD2 C  0 1 Y N N N N N 4.398 15.166 2.436  -1.205 0.879  -0.137 CD2 B2C 7  
B2C CE1  CE1 C  0 1 Y N N N N N 5.813 14.709 4.847  -3.826 -0.054 -0.051 CE1 B2C 8  
B2C CE2  CE2 C  0 1 Y N N N N N 4.753 16.286 3.226  -2.240 1.706  -0.508 CE2 B2C 9  
B2C CZ   CZ  C  0 1 Y N N N N N 5.489 16.109 4.502  -3.552 1.244  -0.470 CZ  B2C 10 
B2C OH   OH  O  0 1 N N N N N N 5.816 17.084 5.251  -4.568 2.065  -0.838 OH  B2C 11 
B2C BR   BR  BR 0 0 N N N N N N 6.729 14.404 6.458  -5.613 -0.670 0.004  BR  B2C 12 
B2C C1   C1  C  0 1 N N N Y N N 6.151 9.584  2.129  2.662  0.326  0.076  C1  B2C 13 
B2C C2   C2  C  0 1 N N N Y N N 4.564 10.526 0.768  2.145  -1.705 0.760  C2  B2C 14 
B2C C3   C3  C  0 1 N N N Y N Y 4.291 7.221  0.356  5.060  -1.785 -0.765 C3  B2C 15 
B2C CA1  CA1 C  0 1 N N R Y N N 7.115 8.573  2.636  3.496  1.512  -0.334 CA1 B2C 16 
B2C CA2  CA2 C  0 1 N N N Y N N 4.971 11.404 1.887  0.929  -0.910 0.516  CA2 B2C 17 
B2C CA3  CA3 C  0 1 N N N Y N N 5.352 8.188  0.127  4.597  -1.218 0.553  CA3 B2C 18 
B2C N1   N1  N  0 1 N N N Y Y N 8.280 8.746  1.808  2.811  2.245  -1.407 N1  B2C 19 
B2C N2   N2  N  0 1 N N N Y N N 5.921 10.764 2.675  1.366  0.316  0.098  N2  B2C 20 
B2C N3   N3  N  0 1 N N N Y N N 5.358 9.360  0.970  3.174  -0.879 0.465  N3  B2C 21 
B2C O2   O2  O  0 1 N N N Y N N 3.769 10.669 -0.167 2.210  -2.859 1.145  O2  B2C 22 
B2C O3   O3  O  0 1 N N N Y N Y 3.859 6.556  -0.608 4.282  -1.894 -1.682 O3  B2C 23 
B2C H1   H1  H  0 1 N N N N N N 6.589 8.543  4.743  4.281  1.921  1.630  H1  B2C 24 
B2C H12  H2  H  0 1 N N N N N N 3.513 12.810 1.415  -0.591 -2.291 1.093  H2  B2C 25 
B2C H3   H3  H  0 1 N N N N N N 8.856 8.151  5.660  4.576  4.358  1.282  H3  B2C 26 
B2C H4   H4  H  0 1 N N N N N N 8.393 6.887  4.471  5.406  3.426  0.012  H4  B2C 27 
B2C H5   H5  H  0 1 N N N N N N 9.533 8.192  3.996  3.849  4.215  -0.337 H5  B2C 28 
B2C H6   H6  H  0 1 N N N N N N 8.047 10.263 5.326  1.846  3.258  0.786  H6  B2C 29 
B2C H8   H8  H  0 1 N N N N N N 5.746 12.613 4.407  -3.013 -1.899 0.646  H8  B2C 30 
B2C H9   H9  H  0 1 N N N N N N 3.852 15.331 1.519  -0.188 1.239  -0.167 H9  B2C 31 
B2C H10  H10 H  0 1 N N N N N N 4.485 17.279 2.896  -2.034 2.716  -0.830 H10 B2C 32 
B2C HA1  H12 H  0 1 N N N Y N N 6.699 7.561  2.519  4.466  1.167  -0.692 H12 B2C 33 
B2C HA31 H13 H  0 1 N N N Y N N 6.311 7.670  0.271  4.747  -1.958 1.339  H13 B2C 34 
B2C HA32 H14 H  0 1 N N N Y N N 5.272 8.529  -0.916 5.170  -0.321 0.784  H14 B2C 35 
B2C H    H15 H  0 1 N N N Y Y N 8.987 8.095  2.086  1.908  2.575  -1.100 H15 B2C 36 
B2C H2   H16 H  0 1 N Y N Y Y N 8.036 8.585  0.852  3.379  3.008  -1.744 H16 B2C 37 
B2C OXT  O1  O  0 1 N Y N Y N Y 3.994 7.145  1.671  6.337  -2.167 -0.919 O1  B2C 38 
B2C HXT  H11 H  0 1 N Y N Y N Y 3.352 6.460  1.812  6.588  -2.525 -1.782 H11 B2C 39 
B2C H7   H7  H  0 1 N N N N N N 6.278 16.757 6.014  -4.788 2.021  -1.778 H7  B2C 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
B2C O3  C3   DOUB N N 1  
B2C O2  C2   DOUB N N 2  
B2C CA3 C3   SING N N 3  
B2C CA3 N3   SING N N 4  
B2C C2  N3   SING N N 5  
B2C C2  CA2  SING N N 6  
B2C N3  C1   SING N N 7  
B2C N1  CA1  SING N N 8  
B2C CA2 CB2  DOUB N Z 9  
B2C CA2 N2   SING N N 10 
B2C CB2 CG2  SING N N 11 
B2C C1  CA1  SING N N 12 
B2C C1  N2   DOUB N N 13 
B2C CD2 CG2  SING Y N 14 
B2C CD2 CE2  DOUB Y N 15 
B2C CA1 CB1  SING N N 16 
B2C CG2 CD1  DOUB Y N 17 
B2C CE2 CZ   SING Y N 18 
B2C CD1 CE1  SING Y N 19 
B2C CB1 OG1  SING N N 20 
B2C CB1 CG1  SING N N 21 
B2C CZ  CE1  DOUB Y N 22 
B2C CZ  OH   SING N N 23 
B2C CE1 BR   SING N N 24 
B2C CB1 H1   SING N N 25 
B2C CB2 H12  SING N N 26 
B2C CG1 H3   SING N N 27 
B2C CG1 H4   SING N N 28 
B2C CG1 H5   SING N N 29 
B2C OG1 H6   SING N N 30 
B2C CD1 H8   SING N N 31 
B2C CD2 H9   SING N N 32 
B2C CE2 H10  SING N N 33 
B2C CA1 HA1  SING N N 34 
B2C CA3 HA31 SING N N 35 
B2C CA3 HA32 SING N N 36 
B2C N1  H    SING N N 37 
B2C N1  H2   SING N N 38 
B2C C3  OXT  SING N N 39 
B2C OXT HXT  SING N N 40 
B2C OH  H7   SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
B2C SMILES           ACDLabs              12.01 "C(O)(C)C(C2=NC(=[C@H]c1cc(Br)c(cc1)O)C(N2CC(O)=O)=O)N"                                                                                                 
B2C InChI            InChI                1.03  "InChI=1S/C15H16BrN3O5/c1-7(20)13(17)14-18-10(15(24)19(14)6-12(22)23)5-8-2-3-11(21)9(16)4-8/h2-5,7,13,20-21H,6,17H2,1H3,(H,22,23)/b10-5-/t7-,13+/m1/s1" 
B2C InChIKey         InChI                1.03  AVGRXPRYNFNBBQ-QHUHAOFSSA-N                                                                                                                             
B2C SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H](N)C1=NC(=C\c2ccc(O)c(Br)c2)/C(=O)N1CC(O)=O"                                                                                            
B2C SMILES           CACTVS               3.385 "C[CH](O)[CH](N)C1=NC(=Cc2ccc(O)c(Br)c2)C(=O)N1CC(O)=O"                                                                                                 
B2C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C1=N/C(=C\c2ccc(c(c2)Br)O)/C(=O)N1CC(=O)O)N)O"                                                                                           
B2C SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1=NC(=Cc2ccc(c(c2)Br)O)C(=O)N1CC(=O)O)N)O"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
B2C "SYSTEMATIC NAME" ACDLabs              12.01 "{(4Z)-2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-[(3-bromo-4-hydroxyphenyl)methylidene]-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid"                 
B2C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(4~{Z})-2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-4-[(3-bromanyl-4-oxidanyl-phenyl)methylidene]-5-oxidanylidene-imidazol-1-yl]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
B2C "Create component" 2019-04-02 RCSB 
B2C "Initial release"  2020-04-08 RCSB 
B2C "Modify backbone"  2023-11-03 PDBE 
B2C "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            B2C 
_pdbx_chem_comp_pcm.modified_residue_id                "THR, TYR, GLY" 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Chromophore/chromophore-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
