data_A7C
# 
_chem_comp.id                                    A7C 
_chem_comp.name                                  "3-[1-(4-bromophenyl)-1H-1,2,3-triazol-4-yl]-1-[5-O-(trihydroxy-lambda~5~-phosphanyl)-beta-D-ribofuranosyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine" 
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C18 H20 Br N8 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-01 
_chem_comp.pdbx_modified_date                    2017-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        571.279 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A7C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6BGB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A7C "C1'" C1  C  0 1 N N R 5.921  6.260  29.777 3.663  -1.270 -0.702 "C1'" A7C 1  
A7C C2    C2  C  0 1 Y N N 1.679  7.567  30.790 2.851  -5.465 0.559  C2    A7C 2  
A7C "C2'" C3  C  0 1 N N R 5.726  5.526  28.452 3.553  -0.964 -2.213 "C2'" A7C 3  
A7C C21   C4  C  0 1 Y N N 5.295  11.070 29.082 -1.100 -1.968 0.666  C21   A7C 4  
A7C C22   C5  C  0 1 Y N N 6.425  11.426 28.364 -1.876 -1.012 0.084  C22   A7C 5  
A7C C26   C6  C  0 1 Y N N 7.050  13.553 27.585 -4.238 -0.337 0.345  C26   A7C 6  
A7C C27   C7  C  0 1 Y N N 6.540  14.575 26.782 -4.154 0.667  -0.610 C27   A7C 7  
A7C C28   C8  C  0 1 Y N N 7.337  15.449 26.055 -5.265 1.433  -0.905 C28   A7C 8  
A7C C29   C9  C  0 1 Y N N 8.715  15.328 26.099 -6.461 1.200  -0.249 C29   A7C 9  
A7C "C3'" C10 C  0 1 N N S 6.912  6.065  27.666 4.238  0.412  -2.368 "C3'" A7C 10 
A7C C30   C11 C  0 1 Y N N 9.271  14.319 26.881 -6.547 0.200  0.704  C30   A7C 11 
A7C C31   C12 C  0 1 Y N N 8.444  13.453 27.600 -5.439 -0.569 1.002  C31   A7C 12 
A7C C4    C13 C  0 1 Y N N 3.904  7.764  30.106 2.368  -3.258 0.123  C4    A7C 13 
A7C "C4'" C14 C  0 1 N N R 7.998  6.053  28.728 4.681  0.774  -0.933 "C4'" A7C 14 
A7C C5    C15 C  0 1 Y N N 3.690  9.195  29.914 1.036  -3.492 0.516  C5    A7C 15 
A7C "C5'" C16 C  0 1 N N N 9.214  6.893  28.459 4.514  2.275  -0.687 "C5'" A7C 16 
A7C C6    C17 C  0 1 Y N N 2.354  9.746  30.207 0.678  -4.783 0.938  C6    A7C 17 
A7C C7    C18 C  0 1 Y N N 5.016  9.658  29.464 0.332  -2.219 0.371  C7    A7C 18 
A7C N1    N1  N  0 1 Y N N 1.413  8.872  30.630 1.613  -5.728 0.942  N1    A7C 19 
A7C N23   N2  N  0 1 Y N N 6.216  12.737 28.242 -3.113 -1.120 0.641  N23   A7C 20 
A7C N24   N3  N  0 1 Y N N 5.012  13.210 28.778 -3.042 -2.169 1.570  N24   A7C 21 
A7C N25   N4  N  0 1 Y N N 4.415  12.060 29.331 -1.844 -2.641 1.556  N25   A7C 22 
A7C N3    N5  N  0 1 Y N N 2.874  7.001  30.531 3.233  -4.271 0.162  N3    A7C 23 
A7C N6    N6  N  0 1 N N N 2.076  11.060 30.061 -0.615 -5.065 1.333  N6    A7C 24 
A7C N8    N7  N  0 1 Y N N 5.908  8.662  29.360 1.200  -1.339 -0.069 N8    A7C 25 
A7C N9    N8  N  0 1 Y N N 5.183  7.525  29.783 2.451  -1.944 -0.229 N9    A7C 26 
A7C "O2'" O1  O  0 1 N N N 5.873  4.136  28.702 4.242  -1.956 -2.976 "O2'" A7C 27 
A7C "O3'" O2  O  0 1 N N N 7.235  5.327  26.497 5.372  0.312  -3.231 "O3'" A7C 28 
A7C "O4'" O3  O  0 1 N N N 7.305  6.532  29.909 3.797  0.022  -0.073 "O4'" A7C 29 
A7C "O5'" O4  O  0 1 N N N 8.872  8.126  27.850 5.037  2.608  0.601  "O5'" A7C 30 
A7C OP1   O5  O  0 1 N N N 9.307  10.475 27.072 3.505  4.862  1.804  OP1   A7C 31 
A7C OP2   O6  O  0 1 N N N 11.087 8.601  26.790 6.180  5.359  0.591  OP2   A7C 32 
A7C P     P1  P  0 1 N N N 9.986  9.234  27.602 4.907  4.276  0.999  P     A7C 33 
A7C BR3   BR1 BR 0 0 N N N 9.790  16.528 25.102 -7.980 2.251  -0.654 BR3   A7C 34 
A7C H1    H1  H  0 1 N N N 5.572  5.618  30.599 4.541  -1.884 -0.501 H1    A7C 35 
A7C H2    H2  H  0 1 N N N 0.885  6.929  31.149 3.579  -6.262 0.578  H2    A7C 36 
A7C H3    H3  H  0 1 N N N 4.768  5.787  27.978 2.507  -0.909 -2.516 H3    A7C 37 
A7C H4    H4  H  0 1 N N N 7.241  10.816 28.006 -1.569 -0.306 -0.673 H4    A7C 38 
A7C H5    H5  H  0 1 N N N 5.468  14.692 26.723 -3.221 0.849  -1.123 H5    A7C 39 
A7C H6    H6  H  0 1 N N N 6.882  16.223 25.455 -5.200 2.214  -1.648 H6    A7C 40 
A7C H7    H7  H  0 1 N N N 6.702  7.111  27.397 3.532  1.150  -2.747 H7    A7C 41 
A7C H8    H8  H  0 1 N N N 10.344 14.206 26.932 -7.481 0.021  1.215  H8    A7C 42 
A7C H9    H9  H  0 1 N N N 8.901  12.674 28.192 -5.508 -1.352 1.742  H9    A7C 43 
A7C H10   H10 H  0 1 N N N 8.317  5.013  28.889 5.716  0.475  -0.768 H10   A7C 44 
A7C H11   H11 H  0 1 N N N 9.889  6.340  27.790 5.055  2.831  -1.453 H11   A7C 45 
A7C H12   H12 H  0 1 N N N 9.726  7.095  29.411 3.456  2.534  -0.728 H12   A7C 46 
A7C H13   H13 H  0 1 N N N 1.122  11.229 30.308 -1.340 -4.472 1.082  H13   A7C 47 
A7C H14   H14 H  0 1 N N N 2.674  11.595 30.657 -0.798 -5.858 1.862  H14   A7C 48 
A7C H15   H15 H  0 1 N N N 5.123  3.821  29.193 4.205  -1.812 -3.932 H15   A7C 49 
A7C H16   H16 H  0 1 N N N 7.982  5.726  26.066 5.158  0.028  -4.131 H16   A7C 50 
A7C H17   H17 H  0 1 N N N 8.640  10.758 27.686 2.845  4.180  1.992  H17   A7C 51 
A7C H18   H18 H  0 1 N N N 11.417 7.835  27.245 6.925  4.938  0.141  H18   A7C 52 
A7C OP3   OP3 O  0 1 N Y N 10.616 9.493  29.062 5.653  3.971  2.519  OP3   A7C 53 
A7C H19   H19 H  0 1 N N N ?      ?      ?      4.270  4.536  -0.300 H19   A7C 54 
A7C H20   H20 H  0 1 N N N 9.962  9.894  29.623 5.757  4.759  3.070  H20   A7C 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A7C BR3   C29   SING N N 1  
A7C C28   C29   DOUB Y N 2  
A7C C28   C27   SING Y N 3  
A7C C29   C30   SING Y N 4  
A7C "O3'" "C3'" SING N N 5  
A7C C27   C26   DOUB Y N 6  
A7C OP2   P     SING N N 7  
A7C C30   C31   DOUB Y N 8  
A7C OP1   P     SING N N 9  
A7C C26   C31   SING Y N 10 
A7C C26   N23   SING N N 11 
A7C P     "O5'" SING N N 12 
A7C "C3'" "C2'" SING N N 13 
A7C "C3'" "C4'" SING N N 14 
A7C "O5'" "C5'" SING N N 15 
A7C N23   C22   SING Y N 16 
A7C N23   N24   SING Y N 17 
A7C C22   C21   DOUB Y N 18 
A7C "C2'" "O2'" SING N N 19 
A7C "C2'" "C1'" SING N N 20 
A7C "C5'" "C4'" SING N N 21 
A7C "C4'" "O4'" SING N N 22 
A7C N24   N25   DOUB Y N 23 
A7C C21   N25   SING Y N 24 
A7C C21   C7    SING N N 25 
A7C N8    C7    DOUB Y N 26 
A7C N8    N9    SING Y N 27 
A7C C7    C5    SING Y N 28 
A7C "C1'" N9    SING N N 29 
A7C "C1'" "O4'" SING N N 30 
A7C N9    C4    SING Y N 31 
A7C C5    C4    DOUB Y N 32 
A7C C5    C6    SING Y N 33 
A7C N6    C6    SING N N 34 
A7C C4    N3    SING Y N 35 
A7C C6    N1    DOUB Y N 36 
A7C N3    C2    DOUB Y N 37 
A7C N1    C2    SING Y N 38 
A7C "C1'" H1    SING N N 39 
A7C C2    H2    SING N N 40 
A7C "C2'" H3    SING N N 41 
A7C C22   H4    SING N N 42 
A7C C27   H5    SING N N 43 
A7C C28   H6    SING N N 44 
A7C "C3'" H7    SING N N 45 
A7C C30   H8    SING N N 46 
A7C C31   H9    SING N N 47 
A7C "C4'" H10   SING N N 48 
A7C "C5'" H11   SING N N 49 
A7C "C5'" H12   SING N N 50 
A7C N6    H13   SING N N 51 
A7C N6    H14   SING N N 52 
A7C "O2'" H15   SING N N 53 
A7C "O3'" H16   SING N N 54 
A7C OP1   H17   SING N N 55 
A7C OP2   H18   SING N N 56 
A7C P     OP3   SING N N 57 
A7C P     H19   SING N N 58 
A7C OP3   H20   SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A7C SMILES           ACDLabs              12.01 "C5(n4c1ncnc(c1c(c2nnn(c2)c3ccc(cc3)Br)n4)N)OC(C(C5O)O)COP(O)(O)O"                                                                                                                                            
A7C InChI            InChI                1.03  "InChI=1S/C18H20BrN8O7P/c19-8-1-3-9(4-2-8)26-5-10(23-25-26)13-12-16(20)21-7-22-17(12)27(24-13)18-15(29)14(28)11(34-18)6-33-35(30,31)32/h1-5,7,11,14-15,18,28-32,35H,6H2,(H2,20,21,22)/t11-,14-,15-,18-/m1/s1" 
A7C InChIKey         InChI                1.03  KXENPULOVKGSQX-XKLVTHTNSA-N                                                                                                                                                                                   
A7C SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n(nc(c3cn(nn3)c4ccc(Br)cc4)c12)[C@@H]5O[C@H](CO[PH](O)(O)O)[C@@H](O)[C@H]5O"                                                                                                                         
A7C SMILES           CACTVS               3.385 "Nc1ncnc2n(nc(c3cn(nn3)c4ccc(Br)cc4)c12)[CH]5O[CH](CO[PH](O)(O)O)[CH](O)[CH]5O"                                                                                                                               
A7C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1n2cc(nn2)c3c4c(ncnc4n(n3)[C@H]5[C@@H]([C@@H]([C@H](O5)COP(O)(O)O)O)O)N)Br"                                                                                                                          
A7C SMILES           "OpenEye OEToolkits" 2.0.6 "c1cc(ccc1n2cc(nn2)c3c4c(ncnc4n(n3)C5C(C(C(O5)COP(O)(O)O)O)O)N)Br"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A7C "SYSTEMATIC NAME" ACDLabs              12.01 "3-[1-(4-bromophenyl)-1H-1,2,3-triazol-4-yl]-1-[5-O-(trihydroxy-lambda~5~-phosphanyl)-beta-D-ribofuranosyl]-1H-pyrazolo[3,4-d]pyrimidin-4-amine"                               
A7C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{R},4~{S},5~{R})-2-[4-azanyl-3-[1-(4-bromophenyl)-1,2,3-triazol-4-yl]pyrazolo[3,4-d]pyrimidin-1-yl]-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A7C "Create component" 2017-11-01 RCSB 
A7C "Initial release"  2017-12-06 RCSB 
# 
