data_A3C
#

_chem_comp.id                                   A3C
_chem_comp.name                                 "2-(methyl{2-[(1S,4aS,8aS)-5,5,8a-trimethyl-2-methylidenedecahydronaphthalen-1-yl]ethyl}amino)ethyl trihydrogen diphosphate"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H37 N O7 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "13-aza-13,14-dihydrocopalyl diphosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-10-22
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       453.447
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    A3C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3P5P
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
A3C  C01   C01   C  0  1  N  N  N  31.884  -18.988  -10.421   2.168  -2.658  -0.747  C01   A3C   1  
A3C  O01   O01   O  0  1  N  N  N  32.101  -19.385  -11.752   2.922  -1.692  -0.011  O01   A3C   2  
A3C  C02   C02   C  0  1  N  N  N  30.751  -17.969  -10.288   1.381  -3.539   0.225  C02   A3C   3  
A3C  P02   P02   P  0  1  N  N  N  30.868  -19.678  -12.760   3.870  -0.598  -0.715  P02   A3C   4  
A3C  N03   N03   N  0  1  N  N  N  30.018  -18.188   -9.062   0.385  -2.721   0.931  N03   A3C   5  
A3C  O03   O03   O  0  1  N  N  N  29.685  -20.321  -11.862   4.457   0.401   0.403  O03   A3C   6  
A3C  P04   P04   P  0  1  N  N  N  28.196  -20.206  -12.483   5.092   1.880   0.358  P04   A3C   7  
A3C  O05   O05   O  0  1  N  N  N  27.213  -20.654  -11.467   5.957   2.134   1.692  O05   A3C   8  
A3C  O06   O06   O  0  1  N  N  N  31.280  -20.568  -13.887   3.083   0.174  -1.702  O06   A3C   9  
A3C  O07   O07   O  0  1  N  N  N  30.376  -18.392  -13.311   5.086  -1.342  -1.462  O07   A3C  10  
A3C  O08   O08   O  0  1  N  N  N  28.016  -20.982  -13.733   5.968   2.005  -0.829  O08   A3C  11  
A3C  O09   O09   O  0  1  N  N  N  27.846  -18.776  -12.735   3.910   2.970   0.269  O09   A3C  12  
A3C  C11   C11   C  0  1  N  N  N  28.763  -17.499   -9.252  -0.715  -2.341   0.034  C11   A3C  13  
A3C  C12   C12   C  0  1  N  N  N  29.016  -15.994   -9.136  -1.595  -1.296   0.722  C12   A3C  14  
A3C  C13   C13   C  0  1  N  N  N  29.815  -19.587   -8.762  -0.122  -3.419   2.120  C13   A3C  15  
A3C  C21   C21   C  0  1  N  N  S  27.711  -15.196   -9.075  -2.684  -0.830  -0.245  C21   A3C  16  
A3C  C22   C22   C  0  1  N  N  N  27.389  -15.068   -7.616  -3.702  -1.936  -0.415  C22   A3C  17  
A3C  C23   C23   C  0  1  N  N  N  26.036  -14.454   -7.522  -4.975  -1.638  -1.175  C23   A3C  18  
A3C  C24   C24   C  0  1  N  N  N  25.750  -13.209   -8.365  -5.609  -0.371  -0.578  C24   A3C  19  
A3C  C25   C25   C  0  1  N  N  S  26.230  -13.351   -9.813  -4.566   0.746  -0.581  C25   A3C  20  
A3C  C26   C26   C  0  1  N  N  N  25.906  -12.097  -10.639  -5.199   2.106  -0.360  C26   A3C  21  
A3C  C27   C27   C  0  1  N  N  N  26.601  -12.284  -11.989  -4.139   3.207  -0.277  C27   A3C  22  
A3C  C28   C28   C  0  1  N  N  N  27.040  -13.725  -12.242  -3.086   2.861   0.772  C28   A3C  23  
A3C  C29   C29   C  0  1  N  N  N  28.139  -14.148  -11.270  -2.391   1.559   0.376  C29   A3C  24  
A3C  C30   C30   C  0  1  N  N  S  27.670  -13.871   -9.840  -3.399   0.409   0.335  C30   A3C  25  
A3C  C31   C31   C  0  1  N  N  N  28.017  -15.336   -6.455  -3.483  -3.130   0.081  C31   A3C  26  
A3C  C32   C32   C  0  1  N  N  N  26.408  -10.807   -9.996  -6.093   2.146   0.876  C32   A3C  27  
A3C  C33   C33   C  0  1  N  N  N  24.396  -11.974  -10.868  -6.083   2.440  -1.584  C33   A3C  28  
A3C  C34   C34   C  0  1  N  N  N  28.797  -13.018   -9.268  -3.845   0.070   1.757  C34   A3C  29  
A3C  H01   H01   H  0  1  N  N  N  31.622  -19.878   -9.831   1.476  -2.145  -1.415  H01   A3C  30  
A3C  H01A  H01A  H  0  0  N  N  N  32.809  -18.531  -10.039   2.846  -3.279  -1.332  H01A  A3C  31  
A3C  H02   H02   H  0  1  N  N  N  31.177  -16.955  -10.278   0.875  -4.329  -0.329  H02   A3C  32  
A3C  H02A  H02A  H  0  0  N  N  N  30.066  -18.077  -11.142   2.065  -3.983   0.948  H02A  A3C  33  
A3C  HO05  HO05  H  0  0  N  N  N  26.673  -21.346  -11.831   6.370   3.007   1.733  HO05  A3C  34  
A3C  HO07  HO07  H  0  0  N  N  N  30.429  -18.412  -14.259   5.646  -1.868  -0.874  HO07  A3C  35  
A3C  HO09  HO09  H  0  0  N  N  N  27.583  -18.669  -13.642   3.296   2.945   1.016  HO09  A3C  36  
A3C  H11   H11   H  0  1  N  N  N  28.355  -17.733  -10.246  -0.306  -1.924  -0.886  H11   A3C  37  
A3C  H11A  H11A  H  0  0  N  N  N  28.043  -17.817   -8.484  -1.313  -3.222  -0.200  H11A  A3C  38  
A3C  H12   H12   H  0  1  N  N  N  29.588  -15.804   -8.216  -2.058  -1.735   1.606  H12   A3C  39  
A3C  H12A  H12A  H  0  0  N  N  N  29.588  -15.665  -10.016  -0.984  -0.444   1.018  H12A  A3C  40  
A3C  H13   H13   H  0  1  N  N  N  29.254  -19.683   -7.821   0.691  -3.559   2.833  H13   A3C  41  
A3C  H13A  H13A  H  0  0  N  N  N  29.247  -20.058   -9.578  -0.910  -2.825   2.581  H13A  A3C  42  
A3C  H13B  H13B  H  0  0  N  N  N  30.790  -20.085   -8.659  -0.521  -4.390   1.829  H13B  A3C  43  
A3C  H21   H21   H  0  1  N  N  N  26.933  -15.743   -9.627  -2.246  -0.577  -1.207  H21   A3C  44  
A3C  H23   H23   H  0  1  N  N  N  25.317  -15.223   -7.840  -4.748  -1.469  -2.227  H23   A3C  45  
A3C  H23A  H23A  H  0  0  N  N  N  25.893  -14.164   -6.471  -5.669  -2.471  -1.075  H23A  A3C  46  
A3C  H24   H24   H  0  1  N  N  N  24.663  -13.038   -8.375  -6.463  -0.098  -1.201  H24   A3C  47  
A3C  H24A  H24A  H  0  0  N  N  N  26.271  -12.354   -7.909  -5.963  -0.586   0.424  H24A  A3C  48  
A3C  H25   H25   H  0  1  N  N  N  25.662  -14.128  -10.345  -4.145   0.762  -1.619  H25   A3C  49  
A3C  H27   H27   H  0  1  N  N  N  25.897  -11.993  -12.783  -3.660   3.317  -1.252  H27   A3C  50  
A3C  H27A  H27A  H  0  0  N  N  N  27.494  -11.642  -12.009  -4.622   4.150  -0.012  H27A  A3C  51  
A3C  H28   H28   H  0  1  N  N  N  26.173  -14.389  -12.110  -2.339   3.663   0.805  H28   A3C  52  
A3C  H28A  H28A  H  0  0  N  N  N  27.424  -13.805  -13.270  -3.536   2.772   1.756  H28A  A3C  53  
A3C  H29   H29   H  0  1  N  N  N  28.346  -15.222  -11.390  -1.937   1.679  -0.609  H29   A3C  54  
A3C  H29A  H29A  H  0  0  N  N  N  29.056  -13.576  -11.476  -1.610   1.345   1.107  H29A  A3C  55  
A3C  H31   H31   H  0  1  N  N  N  27.537  -15.105   -5.516  -2.622  -3.304   0.709  H31   A3C  56  
A3C  H31A  H31A  H  0  0  N  N  N  29.001  -15.782   -6.464  -4.163  -3.940  -0.139  H31A  A3C  57  
A3C  H32   H32   H  0  1  N  N  N  26.145   -9.951  -10.635  -5.479   2.044   1.772  H32   A3C  58  
A3C  H32A  H32A  H  0  0  N  N  N  25.940  -10.684   -9.008  -6.627   3.096   0.908  H32A  A3C  59  
A3C  H32B  H32B  H  0  0  N  N  N  27.501  -10.856   -9.881  -6.810   1.327   0.832  H32B  A3C  60  
A3C  H33   H33   H  0  1  N  N  N  24.187  -11.071  -11.460  -6.858   1.682  -1.690  H33   A3C  61  
A3C  H33A  H33A  H  0  0  N  N  N  24.034  -12.860  -11.410  -6.546   3.417  -1.441  H33A  A3C  62  
A3C  H33B  H33B  H  0  0  N  N  N  23.883  -11.903   -9.898  -5.467   2.458  -2.483  H33B  A3C  63  
A3C  H34   H34   H  0  1  N  N  N  28.819  -12.046   -9.782  -4.357   0.928   2.192  H34   A3C  64  
A3C  H34A  H34A  H  0  0  N  N  N  28.628  -12.861   -8.193  -4.523  -0.783   1.731  H34A  A3C  65  
A3C  H34B  H34B  H  0  0  N  N  N  29.758  -13.533   -9.417  -2.973  -0.178   2.362  H34B  A3C  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A3C  O01  C01   SING  N  N   1  
A3C  C01  C02   SING  N  N   2  
A3C  C01  H01   SING  N  N   3  
A3C  C01  H01A  SING  N  N   4  
A3C  P02  O01   SING  N  N   5  
A3C  C02  N03   SING  N  N   6  
A3C  C02  H02   SING  N  N   7  
A3C  C02  H02A  SING  N  N   8  
A3C  O06  P02   DOUB  N  N   9  
A3C  O07  P02   SING  N  N  10  
A3C  P02  O03   SING  N  N  11  
A3C  C11  N03   SING  N  N  12  
A3C  N03  C13   SING  N  N  13  
A3C  P04  O03   SING  N  N  14  
A3C  O08  P04   DOUB  N  N  15  
A3C  O09  P04   SING  N  N  16  
A3C  P04  O05   SING  N  N  17  
A3C  O05  HO05  SING  N  N  18  
A3C  O07  HO07  SING  N  N  19  
A3C  O09  HO09  SING  N  N  20  
A3C  C11  C12   SING  N  N  21  
A3C  C11  H11   SING  N  N  22  
A3C  C11  H11A  SING  N  N  23  
A3C  C12  C21   SING  N  N  24  
A3C  C12  H12   SING  N  N  25  
A3C  C12  H12A  SING  N  N  26  
A3C  C13  H13   SING  N  N  27  
A3C  C13  H13A  SING  N  N  28  
A3C  C13  H13B  SING  N  N  29  
A3C  C30  C21   SING  N  N  30  
A3C  C21  C22   SING  N  N  31  
A3C  C21  H21   SING  N  N  32  
A3C  C22  C23   SING  N  N  33  
A3C  C22  C31   DOUB  N  N  34  
A3C  C24  C23   SING  N  N  35  
A3C  C23  H23   SING  N  N  36  
A3C  C23  H23A  SING  N  N  37  
A3C  C25  C24   SING  N  N  38  
A3C  C24  H24   SING  N  N  39  
A3C  C24  H24A  SING  N  N  40  
A3C  C26  C25   SING  N  N  41  
A3C  C30  C25   SING  N  N  42  
A3C  C25  H25   SING  N  N  43  
A3C  C27  C26   SING  N  N  44  
A3C  C33  C26   SING  N  N  45  
A3C  C26  C32   SING  N  N  46  
A3C  C28  C27   SING  N  N  47  
A3C  C27  H27   SING  N  N  48  
A3C  C27  H27A  SING  N  N  49  
A3C  C28  C29   SING  N  N  50  
A3C  C28  H28   SING  N  N  51  
A3C  C28  H28A  SING  N  N  52  
A3C  C29  C30   SING  N  N  53  
A3C  C29  H29   SING  N  N  54  
A3C  C29  H29A  SING  N  N  55  
A3C  C30  C34   SING  N  N  56  
A3C  C31  H31   SING  N  N  57  
A3C  C31  H31A  SING  N  N  58  
A3C  C32  H32   SING  N  N  59  
A3C  C32  H32A  SING  N  N  60  
A3C  C32  H32B  SING  N  N  61  
A3C  C33  H33   SING  N  N  62  
A3C  C33  H33A  SING  N  N  63  
A3C  C33  H33B  SING  N  N  64  
A3C  C34  H34   SING  N  N  65  
A3C  C34  H34A  SING  N  N  66  
A3C  C34  H34B  SING  N  N  67  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
A3C  SMILES            ACDLabs               12.01  "O=P(O)(O)OP(=O)(O)OCCN(C)CCC1C(=C)\CCC2C(CCCC12C)(C)C"  
A3C  SMILES_CANONICAL  CACTVS                3.370  "CN(CCO[P](O)(=O)O[P](O)(O)=O)CC[C@H]1C(=C)CC[C@H]2C(C)(C)CCC[C@]12C"  
A3C  SMILES            CACTVS                3.370  "CN(CCO[P](O)(=O)O[P](O)(O)=O)CC[CH]1C(=C)CC[CH]2C(C)(C)CCC[C]12C"  
A3C  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "C[C@]12CCCC([C@@H]1CCC(=C)[C@@H]2CC[N@@](C)CCO[P@](=O)(O)OP(=O)(O)O)(C)C"  
A3C  SMILES            "OpenEye OEToolkits"  1.7.0  "CC1(CCCC2(C1CCC(=C)C2CCN(C)CCOP(=O)(O)OP(=O)(O)O)C)C"  
A3C  InChI             InChI                 1.03   "InChI=1S/C19H37NO7P2/c1-15-7-8-17-18(2,3)10-6-11-19(17,4)16(15)9-12-20(5)13-14-26-29(24,25)27-28(21,22)23/h16-17H,1,6-14H2,2-5H3,(H,24,25)(H2,21,22,23)/t16-,17-,19+/m0/s1"  
A3C  InChIKey          InChI                 1.03   ZYKKZQANNLZNRN-JENIJYKNSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
A3C  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(methyl{2-[(1S,4aS,8aS)-5,5,8a-trimethyl-2-methylidenedecahydronaphthalen-1-yl]ethyl}amino)ethyl trihydrogen diphosphate"  
A3C  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.0  "2-[2-[(1S,4aS,8aS)-5,5,8a-trimethyl-2-methylidene-3,4,4a,6,7,8-hexahydro-1H-naphthalen-1-yl]ethyl-methyl-amino]ethyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
A3C  "Create component"   2010-10-22  RCSB  
A3C  "Modify descriptor"  2011-06-04  RCSB  
A3C  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     A3C
_pdbx_chem_comp_synonyms.name        "13-aza-13,14-dihydrocopalyl diphosphate"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
