data_8RC
# 
_chem_comp.id                                    8RC 
_chem_comp.name                                  
;6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3R)-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazin
e-2-carboxamide
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H42 N8 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Naquotinib 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-08-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        562.706 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8RC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5Y9T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8RC C12 C1  C 0 1 Y N N N N N 0.103  49.541 -16.910 0.418  2.850  -0.446 C12 8RC 1  
8RC C14 C2  C 0 1 Y N N N N N 1.737  51.055 -16.181 0.003  0.598  0.290  C14 8RC 2  
8RC C11 C3  C 0 1 Y N N N N N 0.302  49.971 -18.210 -0.924 3.144  -0.303 C11 8RC 3  
8RC C15 C4  C 0 1 Y N N N N N 1.947  51.501 -17.469 -1.339 0.890  0.428  C15 8RC 4  
8RC C13 C5  C 0 1 Y N N N N N 0.815  50.070 -15.851 0.885  1.575  -0.153 C13 8RC 5  
8RC C10 C6  C 0 1 Y N N N N N 1.225  50.954 -18.505 -1.806 2.165  0.134  C10 8RC 6  
8RC C1  C7  C 0 1 Y N N N N N 1.215  51.789 -22.181 -5.481 1.783  0.154  C1  8RC 7  
8RC C5  C8  C 0 1 Y N N N N N 0.039  50.411 -23.502 -6.002 -0.429 -0.159 C5  8RC 8  
8RC C2  C9  C 0 1 Y N N N N N 0.958  51.016 -21.051 -4.113 1.465  0.131  C2  8RC 9  
8RC C4  C10 C 0 1 Y N N N N N -0.217 49.610 -22.397 -4.642 -0.748 -0.177 C4  8RC 10 
8RC C29 C11 C 0 1 N N N N N N 1.986  53.026 -22.047 -5.913 3.181  0.337  C29 8RC 11 
8RC C38 C12 C 0 1 N N N N N N -5.136 48.217 -20.612 0.203  -3.508 1.017  C38 8RC 12 
8RC C18 C13 C 0 1 N N N N N N -0.791 48.561 -12.865 3.978  -0.453 -0.255 C18 8RC 13 
8RC C20 C14 C 0 1 N N N N N N 1.183  49.990 -12.199 4.553  1.937  0.174  C20 8RC 14 
8RC C37 C15 C 0 1 N N N N N N -1.998 46.550 -21.686 -2.647 -3.567 -1.400 C37 8RC 15 
8RC C17 C16 C 0 1 N N N N N N -0.728 49.179 -14.250 2.518  -0.120 0.060  C17 8RC 16 
8RC C21 C17 C 0 1 N N N N N N 1.057  50.633 -13.557 3.076  2.201  0.475  C21 8RC 17 
8RC C36 C18 C 0 1 N N N N N N -3.486 46.531 -21.390 -1.229 -4.008 -0.980 C36 8RC 18 
8RC C23 C19 C 0 1 N N N N N N -1.122 49.058 -9.449  6.571  0.556  -1.210 C23 8RC 19 
8RC C27 C20 C 0 1 N N N N N N 0.617  47.442 -10.425 7.207  0.926  1.096  C27 8RC 20 
8RC C24 C21 C 0 1 N N N N N N -0.643 48.711 -8.050  8.016  0.181  -1.548 C24 8RC 21 
8RC C26 C22 C 0 1 N N N N N N 1.272  47.323 -9.076  8.651  0.551  0.758  C26 8RC 22 
8RC C34 C23 C 0 1 N N N N N N -2.808 48.778 -21.143 -2.123 -2.602 0.737  C34 8RC 23 
8RC C19 C24 C 0 1 N N N N N N -0.171 49.458 -11.786 4.892  0.488  0.534  C19 8RC 24 
8RC C33 C25 C 0 1 N N R N N N -1.556 47.964 -21.420 -2.862 -2.266 -0.582 C33 8RC 25 
8RC C32 C26 C 0 1 N N N N N N 0.496  49.269 -25.646 -7.351 -1.689 -1.814 C32 8RC 26 
8RC C41 C27 C 0 1 N N N N N N -6.785 49.211 -19.086 2.436  -4.446 1.169  C41 8RC 27 
8RC C28 C28 C 0 1 N N N N N N 0.676  46.964 -6.769  10.330 0.618  -0.986 C28 8RC 28 
8RC C9  C29 C 0 1 N N N N N N -0.496 50.071 -24.850 -7.030 -1.517 -0.328 C9  8RC 29 
8RC C40 C30 C 0 1 N N N N N N -5.498 48.402 -19.164 1.304  -4.324 0.482  C40 8RC 30 
8RC N6  N1  N 0 1 Y N N N N N 0.774  51.526 -23.414 -6.387 0.818  0.004  N6  8RC 31 
8RC N3  N2  N 0 1 Y N N N N N 0.237  49.891 -21.159 -3.732 0.204  -0.034 N3  8RC 32 
8RC N16 N3  N 0 1 N N N N N N 0.624  49.620 -14.508 2.243  1.276  -0.304 N16 8RC 33 
8RC N35 N4  N 0 1 N N N N N N -3.824 47.821 -20.826 -0.945 -3.384 0.320  N35 8RC 34 
8RC N22 N5  N 0 1 N N N N N N -0.019 48.800 -10.445 6.294  0.213  0.192  N22 8RC 35 
8RC N25 N6  N 0 1 N N N N N N 0.155  47.423 -8.084  8.929  0.894  -0.644 N25 8RC 36 
8RC N31 N7  N 0 1 N N N N N N 2.171  53.779 -23.150 -7.219 3.465  0.517  N31 8RC 37 
8RC N7  N8  N 0 1 N N N N N N 1.484  51.436 -19.803 -3.167 2.463  0.280  N7  8RC 38 
8RC O30 O1  O 0 1 N N N N N N 2.392  53.393 -20.966 -5.092 4.077  0.325  O30 8RC 39 
8RC O39 O2  O 0 1 N N N N N N -5.946 48.396 -21.515 0.327  -2.945 2.088  O39 8RC 40 
8RC O8  O3  O 0 1 N N N N N N -0.977 48.455 -22.612 -4.252 -2.035 -0.345 O8  8RC 41 
8RC H1  H1  H 0 1 N N N N N N -0.629 48.771 -16.718 1.103  3.610  -0.791 H1  8RC 42 
8RC H2  H2  H 0 1 N N N N N N 2.321  51.495 -15.386 0.366  -0.393 0.519  H2  8RC 43 
8RC H3  H3  H 0 1 N N N N N N -0.276 49.529 -19.009 -1.287 4.135  -0.531 H3  8RC 44 
8RC H4  H4  H 0 1 N N N N N N 2.674  52.275 -17.664 -2.025 0.130  0.772  H4  8RC 45 
8RC H5  H5  H 0 1 N N N N N N -1.845 48.380 -12.608 4.186  -1.485 0.030  H5  8RC 46 
8RC H6  H6  H 0 1 N N N N N N -0.248 47.604 -12.882 4.159  -0.326 -1.322 H6  8RC 47 
8RC H7  H7  H 0 1 N N N N N N 1.907  49.163 -12.247 4.742  2.102  -0.887 H7  8RC 48 
8RC H8  H8  H 0 1 N N N N N N 1.527  50.736 -11.467 5.172  2.614  0.763  H8  8RC 49 
8RC H9  H9  H 0 1 N N N N N N -1.811 46.279 -22.736 -2.685 -3.360 -2.470 H9  8RC 50 
8RC H10 H10 H 0 1 N N N N N N -1.465 45.850 -21.026 -3.383 -4.322 -1.125 H10 8RC 51 
8RC H11 H11 H 0 1 N N N N N N -1.412 50.039 -14.302 1.864  -0.780 -0.511 H11 8RC 52 
8RC H12 H12 H 0 1 N N N N N N -1.022 48.431 -15.001 2.334  -0.261 1.125  H12 8RC 53 
8RC H13 H13 H 0 1 N N N N N N 2.031  51.041 -13.866 2.890  2.049  1.539  H13 8RC 54 
8RC H14 H14 H 0 1 N N N N N N 0.316  51.445 -13.516 2.828  3.227  0.206  H14 8RC 55 
8RC H15 H15 H 0 1 N N N N N N -4.053 46.364 -22.318 -1.190 -5.093 -0.888 H15 8RC 56 
8RC H16 H16 H 0 1 N N N N N N -3.717 45.732 -20.670 -0.502 -3.671 -1.720 H16 8RC 57 
8RC H17 H17 H 0 1 N N N N N N -1.406 50.120 -9.485  6.429  1.626  -1.357 H17 8RC 58 
8RC H18 H18 H 0 1 N N N N N N -1.994 48.437 -9.701  5.891  0.006  -1.860 H18 8RC 59 
8RC H19 H19 H 0 1 N N N N N N -0.145 46.659 -10.552 6.990  0.646  2.127  H19 8RC 60 
8RC H20 H20 H 0 1 N N N N N N 1.367  47.357 -11.225 7.072  2.001  0.976  H20 8RC 61 
8RC H21 H21 H 0 1 N N N N N N -0.007 49.524 -7.670  8.150  -0.894 -1.427 H21 8RC 62 
8RC H22 H22 H 0 1 N N N N N N -1.512 48.585 -7.388  8.232  0.460  -2.579 H22 8RC 63 
8RC H23 H23 H 0 1 N N N N N N 1.786  46.355 -8.981  9.332  1.101  1.409  H23 8RC 64 
8RC H24 H24 H 0 1 N N N N N N 1.995  48.138 -8.926  8.793  -0.520 0.905  H24 8RC 65 
8RC H25 H25 H 0 1 N N N N N N -2.644 49.459 -20.295 -1.812 -1.687 1.241  H25 8RC 66 
8RC H26 H26 H 0 1 N N N N N N -3.092 49.360 -22.032 -2.761 -3.197 1.391  H26 8RC 67 
8RC H27 H27 H 0 1 N N N N N N -0.840 50.322 -11.658 4.740  0.334  1.602  H27 8RC 68 
8RC H28 H28 H 0 1 N N N N N N -0.863 48.008 -20.566 -2.405 -1.411 -1.079 H28 8RC 69 
8RC H29 H29 H 0 1 N N N N N N 0.071  49.035 -26.633 -7.743 -0.753 -2.212 H29 8RC 70 
8RC H30 H30 H 0 1 N N N N N N 1.420  49.852 -25.773 -6.443 -1.961 -2.352 H30 8RC 71 
8RC H31 H31 H 0 1 N N N N N N 0.723  48.334 -25.114 -8.095 -2.476 -1.936 H31 8RC 72 
8RC H32 H32 H 0 1 N N N N N N -7.270 49.544 -19.992 3.244  -5.044 0.777  H32 8RC 73 
8RC H33 H33 H 0 1 N N N N N N -7.214 49.452 -18.125 2.547  -3.946 2.120  H33 8RC 74 
8RC H35 H35 H 0 1 N N N N N N -0.123 47.025 -6.016  10.539 -0.442 -0.837 H35 8RC 75 
8RC H36 H36 H 0 1 N N N N N N 1.020  45.923 -6.854  10.508 0.881  -2.029 H36 8RC 76 
8RC H37 H37 H 0 1 N N N N N N 1.517  47.604 -6.464  10.984 1.210  -0.345 H37 8RC 77 
8RC H38 H38 H 0 1 N N N N N N -0.721 51.002 -25.391 -6.639 -2.453 0.070  H38 8RC 78 
8RC H39 H39 H 0 1 N N N N N N -1.419 49.484 -24.732 -7.938 -1.245 0.210  H39 8RC 79 
8RC H40 H40 H 0 1 N N N N N N -4.939 48.024 -18.321 1.193  -4.823 -0.469 H40 8RC 80 
8RC H44 H44 H 0 1 N N N N N N 2.649  54.655 -23.083 -7.874 2.749  0.527  H44 8RC 81 
8RC H45 H45 H 0 1 N N N N N N 1.830  53.462 -24.035 -7.503 4.384  0.638  H45 8RC 82 
8RC H46 H46 H 0 1 N N N N N N 2.139  52.190 -19.852 -3.445 3.369  0.485  H46 8RC 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8RC C32 C9  SING N N 1  
8RC C9  C5  SING N N 2  
8RC C5  N6  DOUB Y N 3  
8RC C5  C4  SING Y N 4  
8RC N6  C1  SING Y N 5  
8RC N31 C29 SING N N 6  
8RC O8  C4  SING N N 7  
8RC O8  C33 SING N N 8  
8RC C4  N3  DOUB Y N 9  
8RC C1  C29 SING N N 10 
8RC C1  C2  DOUB Y N 11 
8RC C29 O30 DOUB N N 12 
8RC C37 C33 SING N N 13 
8RC C37 C36 SING N N 14 
8RC O39 C38 DOUB N N 15 
8RC C33 C34 SING N N 16 
8RC C36 N35 SING N N 17 
8RC N3  C2  SING Y N 18 
8RC C34 N35 SING N N 19 
8RC C2  N7  SING N N 20 
8RC N35 C38 SING N N 21 
8RC C38 C40 SING N N 22 
8RC N7  C10 SING N N 23 
8RC C40 C41 DOUB N N 24 
8RC C10 C11 DOUB Y N 25 
8RC C10 C15 SING Y N 26 
8RC C11 C12 SING Y N 27 
8RC C15 C14 DOUB Y N 28 
8RC C12 C13 DOUB Y N 29 
8RC C14 C13 SING Y N 30 
8RC C13 N16 SING N N 31 
8RC N16 C17 SING N N 32 
8RC N16 C21 SING N N 33 
8RC C17 C18 SING N N 34 
8RC C21 C20 SING N N 35 
8RC C18 C19 SING N N 36 
8RC C20 C19 SING N N 37 
8RC C19 N22 SING N N 38 
8RC N22 C27 SING N N 39 
8RC N22 C23 SING N N 40 
8RC C27 C26 SING N N 41 
8RC C23 C24 SING N N 42 
8RC C26 N25 SING N N 43 
8RC N25 C24 SING N N 44 
8RC N25 C28 SING N N 45 
8RC C12 H1  SING N N 46 
8RC C14 H2  SING N N 47 
8RC C11 H3  SING N N 48 
8RC C15 H4  SING N N 49 
8RC C18 H5  SING N N 50 
8RC C18 H6  SING N N 51 
8RC C20 H7  SING N N 52 
8RC C20 H8  SING N N 53 
8RC C37 H9  SING N N 54 
8RC C37 H10 SING N N 55 
8RC C17 H11 SING N N 56 
8RC C17 H12 SING N N 57 
8RC C21 H13 SING N N 58 
8RC C21 H14 SING N N 59 
8RC C36 H15 SING N N 60 
8RC C36 H16 SING N N 61 
8RC C23 H17 SING N N 62 
8RC C23 H18 SING N N 63 
8RC C27 H19 SING N N 64 
8RC C27 H20 SING N N 65 
8RC C24 H21 SING N N 66 
8RC C24 H22 SING N N 67 
8RC C26 H23 SING N N 68 
8RC C26 H24 SING N N 69 
8RC C34 H25 SING N N 70 
8RC C34 H26 SING N N 71 
8RC C19 H27 SING N N 72 
8RC C33 H28 SING N N 73 
8RC C32 H29 SING N N 74 
8RC C32 H30 SING N N 75 
8RC C32 H31 SING N N 76 
8RC C41 H32 SING N N 77 
8RC C41 H33 SING N N 78 
8RC C28 H35 SING N N 79 
8RC C28 H36 SING N N 80 
8RC C28 H37 SING N N 81 
8RC C9  H38 SING N N 82 
8RC C9  H39 SING N N 83 
8RC C40 H40 SING N N 84 
8RC N31 H44 SING N N 85 
8RC N31 H45 SING N N 86 
8RC N7  H46 SING N N 87 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8RC InChI            InChI                1.03  "InChI=1S/C30H42N8O3/c1-4-25-30(41-24-12-15-38(20-24)26(39)5-2)34-29(27(33-25)28(31)40)32-21-6-8-22(9-7-21)36-13-10-23(11-14-36)37-18-16-35(3)17-19-37/h5-9,23-24H,2,4,10-20H2,1,3H3,(H2,31,40)(H,32,34)/t24-/m1/s1" 
8RC InChIKey         InChI                1.03  QKDCLUARMDUUKN-XMMPIXPASA-N                                                                                                                                                                                          
8RC SMILES_CANONICAL CACTVS               3.385 "CCc1nc(C(N)=O)c(Nc2ccc(cc2)N3CCC(CC3)N4CCN(C)CC4)nc1O[C@@H]5CCN(C5)C(=O)C=C"                                                                                                                                        
8RC SMILES           CACTVS               3.385 "CCc1nc(C(N)=O)c(Nc2ccc(cc2)N3CCC(CC3)N4CCN(C)CC4)nc1O[CH]5CCN(C5)C(=O)C=C"                                                                                                                                          
8RC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCc1c(nc(c(n1)C(=O)N)Nc2ccc(cc2)N3CCC(CC3)N4CCN(CC4)C)O[C@@H]5CCN(C5)C(=O)C=C"                                                                                                                                      
8RC SMILES           "OpenEye OEToolkits" 2.0.6 "CCc1c(nc(c(n1)C(=O)N)Nc2ccc(cc2)N3CCC(CC3)N4CCN(CC4)C)OC5CCN(C5)C(=O)C=C"                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           8RC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "6-ethyl-3-[[4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]amino]-5-[(3~{R})-1-prop-2-enoylpyrrolidin-3-yl]oxy-pyrazine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8RC "Create component" 2017-08-31 PDBJ 
8RC "Initial release"  2018-07-11 RCSB 
8RC "Modify synonyms"  2020-06-05 PDBE 
8RC "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      8RC 
_pdbx_chem_comp_synonyms.name         Naquotinib 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8RC 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C41 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
