data_84C
# 
_chem_comp.id                                    84C 
_chem_comp.name                                  "tert-butyl-N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxidanyl-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3a,4,5,6,6a-hexahydro-1H-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H42 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "tert-butyl N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3a,4,5,6,6a-hexahydro-1H-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-09-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        494.624 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     84C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PTC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
84C N1  N1  N 0 1 N N N N N N 16.506 6.537  -25.661 -4.315 -2.642 1.996  N1  84C 1  
84C N3  N2  N 0 1 N N N N N N 21.448 5.688  -30.159 0.174  1.120  0.275  N3  84C 2  
84C C4  C1  C 0 1 N N S N N N 18.436 5.370  -26.141 -4.424 -2.630 -0.345 C4  84C 3  
84C C5  C2  C 0 1 N N N N N N 19.107 4.112  -25.572 -5.136 -1.406 -0.924 C5  84C 4  
84C C6  C3  C 0 1 N N S N N N 20.630 4.056  -25.789 -4.096 -0.407 -1.437 C6  84C 5  
84C C7  C4  C 0 1 N N N N N N 21.594 4.782  -27.935 -2.060 0.567  -0.519 C7  84C 6  
84C C8  C5  C 0 1 N N S N N N 21.779 4.474  -29.426 -1.248 1.087  0.639  C8  84C 7  
84C C10 C6  C 0 1 N N R N N N 23.591 5.101  -30.927 -0.585 3.396  0.278  C10 84C 8  
84C C13 C7  C 0 1 N N N N N N 23.427 2.764  -30.373 -1.424 2.776  2.477  C13 84C 9  
84C C15 C8  C 0 1 N N N N N N 20.209 6.208  -30.127 0.908  0.061  -0.120 C15 84C 10 
84C C1  C9  C 0 1 N N N N N N 16.926 5.336  -26.031 -3.647 -2.253 0.897  C1  84C 11 
84C C11 C10 C 0 1 N N N N N N 23.407 4.282  -32.215 -0.423 4.630  1.179  C11 84C 12 
84C C12 C11 C 0 1 N N N N N N 22.883 2.941  -31.775 -0.978 4.248  2.567  C12 84C 13 
84C C14 C12 C 0 1 N N S N N N 23.232 4.163  -29.764 -1.680 2.528  0.973  C14 84C 14 
84C C16 C13 C 0 1 N N S N N N 19.982 7.558  -30.802 2.330  0.258  -0.579 C16 84C 15 
84C C2  C14 C 0 1 N N N N N N 17.580 7.524  -25.569 -5.582 -3.295 1.647  C2  84C 16 
84C C3  C15 C 0 1 N N N N N N 18.815 6.660  -25.439 -5.458 -3.663 0.152  C3  84C 17 
84C C9  C16 C 0 1 N N N N N N 22.635 6.281  -30.793 0.665  2.502  0.406  C9  84C 18 
84C N2  N3  N 0 1 N N N N N N 20.922 3.889  -27.212 -3.307 0.099  -0.312 N2  84C 19 
84C N4  N4  N 0 1 N N N N N N 19.295 7.324  -32.066 3.145  -0.880 -0.146 N4  84C 20 
84C O1  O1  O 0 1 N N N N N N 16.214 4.372  -26.319 -2.576 -1.683 0.900  O1  84C 21 
84C C17 C17 C 0 1 N N N N N N 19.937 7.483  -33.242 4.474  -0.732 0.022  C17 84C 22 
84C C18 C18 C 0 1 N N N N N N 19.557 7.019  -35.657 6.647  -1.546 0.581  C18 84C 23 
84C C19 C19 C 0 1 N N N N N N 20.606 5.935  -35.715 6.870  -0.457 1.632  C19 84C 24 
84C C20 C20 C 0 1 N N N N N N 18.324 6.630  -36.443 7.244  -1.096 -0.754 C20 84C 25 
84C C21 C21 C 0 1 N N N N N N 20.116 8.338  -36.140 7.327  -2.839 1.034  C21 84C 26 
84C C22 C22 C 0 1 N N N N N N 19.202 8.502  -29.864 2.364  0.359  -2.105 C22 84C 27 
84C C23 C23 C 0 1 N N N N N N 19.961 8.768  -28.571 1.613  1.616  -2.550 C23 84C 28 
84C C24 C24 C 0 1 N N N N N N 18.846 9.800  -30.577 3.817  0.438  -2.579 C24 84C 29 
84C C25 C25 C 0 1 N N N N N N 21.260 2.921  -24.994 -4.806 0.759  -2.127 C25 84C 30 
84C O2  O2  O 0 1 N N N N N N 22.019 5.834  -27.458 -1.592 0.568  -1.638 O2  84C 31 
84C O3  O3  O 0 1 N N N N N N 19.298 5.617  -29.537 0.424  -1.051 -0.106 O3  84C 32 
84C O4  O4  O 0 1 N N N N N N 21.091 7.842  -33.350 4.996  0.345  -0.184 O4  84C 33 
84C O5  O5  O 0 1 N N N N N N 19.102 7.177  -34.252 5.223  -1.778 0.420  O5  84C 34 
84C O6  O6  O 0 1 N N N N N N 21.176 3.157  -23.599 -5.756 1.337  -1.230 O6  84C 35 
84C H1  H1  H 0 1 N N N N N N 15.548 6.747  -25.464 -3.998 -2.511 2.904  H1  84C 36 
84C H6  H2  H 0 1 N N N N N N 18.708 5.457  -27.203 -3.763 -3.073 -1.089 H6  84C 37 
84C H7  H3  H 0 1 N N N N N N 18.911 4.076  -24.490 -5.780 -1.715 -1.746 H7  84C 38 
84C H8  H4  H 0 1 N N N N N N 18.657 3.232  -26.056 -5.739 -0.935 -0.147 H8  84C 39 
84C H9  H5  H 0 1 N N N N N N 21.062 5.006  -25.440 -3.437 -0.904 -2.149 H9  84C 40 
84C H11 H6  H 0 1 N N N N N N 21.130 3.637  -29.724 -1.392 0.446  1.509  H11 84C 41 
84C H14 H7  H 0 1 N N N N N N 24.634 5.439  -30.836 -0.830 3.641  -0.756 H14 84C 42 
84C H19 H8  H 0 1 N N N N N N 22.856 2.005  -29.818 -0.635 2.118  2.841  H19 84C 43 
84C H20 H9  H 0 1 N N N N N N 24.490 2.483  -30.391 -2.339 2.620  3.048  H20 84C 44 
84C H15 H10 H 0 1 N N N N N N 24.369 4.166  -32.736 0.630  4.897  1.261  H15 84C 45 
84C H16 H11 H 0 1 N N N N N N 22.685 4.775  -32.883 -0.989 5.468  0.771  H16 84C 46 
84C H17 H12 H 0 1 N N N N N N 21.783 2.936  -31.769 -1.831 4.880  2.815  H17 84C 47 
84C H18 H13 H 0 1 N N N N N N 23.250 2.144  -32.438 -0.200 4.356  3.323  H18 84C 48 
84C H21 H14 H 0 1 N N N N N N 23.893 4.322  -28.899 -2.695 2.774  0.661  H21 84C 49 
84C H22 H15 H 0 1 N N N N N N 20.964 8.012  -31.003 2.728  1.175  -0.145 H22 84C 50 
84C H2  H16 H 0 1 N N N N N N 17.625 8.147  -26.475 -5.720 -4.195 2.247  H2  84C 51 
84C H3  H17 H 0 1 N N N N N N 17.452 8.168  -24.687 -6.415 -2.608 1.799  H3  84C 52 
84C H4  H18 H 0 1 N N N N N N 19.053 6.474  -24.381 -6.410 -3.542 -0.364 H4  84C 53 
84C H5  H19 H 0 1 N N N N N N 19.677 7.134  -25.931 -5.080 -4.679 0.037  H5  84C 54 
84C H13 H20 H 0 1 N N N N N N 23.068 7.068  -30.159 1.130  2.641  1.382  H13 84C 55 
84C H12 H21 H 0 1 N N N N N N 22.386 6.700  -31.779 1.376  2.731  -0.388 H12 84C 56 
84C H10 H22 H 0 1 N N N N N N 20.599 3.059  -27.667 -3.682 0.097  0.583  H10 84C 57 
84C H23 H23 H 0 1 N N N N N N 18.336 7.042  -32.062 2.728  -1.740 0.019  H23 84C 58 
84C H24 H24 H 0 1 N N N N N N 21.488 6.246  -35.136 6.445  -0.777 2.583  H24 84C 59 
84C H25 H25 H 0 1 N N N N N N 20.197 5.006  -35.290 7.939  -0.282 1.753  H25 84C 60 
84C H26 H26 H 0 1 N N N N N N 20.897 5.762  -36.762 6.386  0.465  1.309  H26 84C 61 
84C H29 H27 H 0 1 N N N N N N 17.940 5.669  -36.071 6.760  -0.174 -1.077 H29 84C 62 
84C H27 H28 H 0 1 N N N N N N 17.553 7.405  -36.322 8.313  -0.921 -0.633 H27 84C 63 
84C H28 H29 H 0 1 N N N N N N 18.583 6.534  -37.508 7.085  -1.871 -1.503 H28 84C 64 
84C H31 H30 H 0 1 N N N N N N 21.010 8.595  -35.552 7.168  -3.615 0.285  H31 84C 65 
84C H32 H31 H 0 1 N N N N N N 20.388 8.254  -37.203 8.396  -2.665 1.155  H32 84C 66 
84C H30 H32 H 0 1 N N N N N N 19.357 9.125  -36.017 6.901  -3.159 1.985  H30 84C 67 
84C H33 H33 H 0 1 N N N N N N 18.260 7.998  -29.600 1.888  -0.521 -2.538 H33 84C 68 
84C H34 H34 H 0 1 N N N N N N 19.373 9.443  -27.932 2.066  2.492  -2.086 H34 84C 69 
84C H35 H35 H 0 1 N N N N N N 20.130 7.818  -28.043 1.671  1.708  -3.635 H35 84C 70 
84C H36 H36 H 0 1 N N N N N N 20.929 9.235  -28.804 0.569  1.542  -2.246 H36 84C 71 
84C H38 H37 H 0 1 N N N N N N 18.291 10.456 -29.890 4.352  -0.457 -2.261 H38 84C 72 
84C H39 H38 H 0 1 N N N N N N 19.768 10.305 -30.902 3.841  0.510  -3.666 H39 84C 73 
84C H37 H39 H 0 1 N N N N N N 18.222 9.577  -31.455 4.293  1.318  -2.145 H37 84C 74 
84C H40 H40 H 0 1 N N N N N N 20.735 1.984  -25.231 -4.073 1.512  -2.415 H40 84C 75 
84C H41 H41 H 0 1 N Y N N N N 22.319 2.830  -25.278 -5.322 0.396  -3.017 H41 84C 76 
84C H42 H42 H 0 1 N N N N N N 21.576 2.434  -23.130 -6.245 2.084  -1.601 H42 84C 77 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
84C C20 C18 SING N N 1  
84C C21 C18 SING N N 2  
84C C19 C18 SING N N 3  
84C C18 O5  SING N N 4  
84C O5  C17 SING N N 5  
84C O4  C17 DOUB N N 6  
84C C17 N4  SING N N 7  
84C C11 C12 SING N N 8  
84C C11 C10 SING N N 9  
84C N4  C16 SING N N 10 
84C C12 C13 SING N N 11 
84C C10 C9  SING N N 12 
84C C10 C14 SING N N 13 
84C C16 C15 SING N N 14 
84C C16 C22 SING N N 15 
84C C9  N3  SING N N 16 
84C C24 C22 SING N N 17 
84C C13 C14 SING N N 18 
84C N3  C15 SING N N 19 
84C N3  C8  SING N N 20 
84C C15 O3  DOUB N N 21 
84C C22 C23 SING N N 22 
84C C14 C8  SING N N 23 
84C C8  C7  SING N N 24 
84C C7  O2  DOUB N N 25 
84C C7  N2  SING N N 26 
84C N2  C6  SING N N 27 
84C O1  C1  DOUB N N 28 
84C C4  C1  SING N N 29 
84C C4  C5  SING N N 30 
84C C4  C3  SING N N 31 
84C C1  N1  SING N N 32 
84C C6  C5  SING N N 33 
84C C6  C25 SING N N 34 
84C N1  C2  SING N N 35 
84C C2  C3  SING N N 36 
84C C25 O6  SING N N 37 
84C N1  H1  SING N N 38 
84C C4  H6  SING N N 39 
84C C5  H7  SING N N 40 
84C C5  H8  SING N N 41 
84C C6  H9  SING N N 42 
84C C8  H11 SING N N 43 
84C C10 H14 SING N N 44 
84C C13 H19 SING N N 45 
84C C13 H20 SING N N 46 
84C C11 H15 SING N N 47 
84C C11 H16 SING N N 48 
84C C12 H17 SING N N 49 
84C C12 H18 SING N N 50 
84C C14 H21 SING N N 51 
84C C16 H22 SING N N 52 
84C C2  H2  SING N N 53 
84C C2  H3  SING N N 54 
84C C3  H4  SING N N 55 
84C C3  H5  SING N N 56 
84C C9  H13 SING N N 57 
84C C9  H12 SING N N 58 
84C N2  H10 SING N N 59 
84C N4  H23 SING N N 60 
84C C19 H24 SING N N 61 
84C C19 H25 SING N N 62 
84C C19 H26 SING N N 63 
84C C20 H29 SING N N 64 
84C C20 H27 SING N N 65 
84C C20 H28 SING N N 66 
84C C21 H31 SING N N 67 
84C C21 H32 SING N N 68 
84C C21 H30 SING N N 69 
84C C22 H33 SING N N 70 
84C C23 H34 SING N N 71 
84C C23 H35 SING N N 72 
84C C23 H36 SING N N 73 
84C C24 H38 SING N N 74 
84C C24 H39 SING N N 75 
84C C24 H37 SING N N 76 
84C C25 H40 SING N N 77 
84C C25 H41 SING N N 78 
84C O6  H42 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
84C InChI            InChI                1.06  "InChI=1S/C25H42N4O6/c1-14(2)19(28-24(34)35-25(3,4)5)23(33)29-12-16-7-6-8-18(16)20(29)22(32)27-17(13-30)11-15-9-10-26-21(15)31/h14-20,30H,6-13H2,1-5H3,(H,26,31)(H,27,32)(H,28,34)/t15-,16-,17-,18-,19-,20-/m0/s1" 
84C InChIKey         InChI                1.06  MFQBHMWPFDDNFU-RABCQHRBSA-N                                                                                                                                                                                        
84C SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](NC(=O)OC(C)(C)C)C(=O)N1C[C@@H]2CCC[C@@H]2[C@H]1C(=O)N[C@H](CO)C[C@@H]3CCNC3=O"                                                                                                                         
84C SMILES           CACTVS               3.385 "CC(C)[CH](NC(=O)OC(C)(C)C)C(=O)N1C[CH]2CCC[CH]2[CH]1C(=O)N[CH](CO)C[CH]3CCNC3=O"                                                                                                                                  
84C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)N1C[C@@H]2CCC[C@@H]2[C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO)NC(=O)OC(C)(C)C"                                                                                                                       
84C SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)N1CC2CCCC2C1C(=O)NC(CC3CCNC3=O)CO)NC(=O)OC(C)(C)C"                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           84C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl ~{N}-[(2~{S})-1-[(3~{S},3~{a}~{S},6~{a}~{R})-3-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      84C 
_pdbx_chem_comp_synonyms.name         "tert-butyl N-[(2S)-1-[(3S,3aS,6aR)-3-[[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3,3a,4,5,6,6a-hexahydro-1H-cyclopenta[c]pyrrol-2-yl]-3-methyl-1-oxidanylidene-butan-2-yl]carbamate" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         precursor 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
84C "Create component"     2021-09-30 PDBE 
84C "Modify formula"       2021-09-30 PDBE 
84C "Modify aromatic_flag" 2021-10-04 PDBE 
84C "Modify descriptor"    2022-08-22 RCSB 
84C "Initial release"      2023-05-03 RCSB 
84C "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            84C 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C25 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
