data_6FC
# 
_chem_comp.id                                    6FC 
_chem_comp.name                                  "2'-trifluoromethylthio-2'-deoxycytidine" 
_chem_comp.type                                  "RNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C10 H15 F3 N3 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-11-20 
_chem_comp.pdbx_modified_date                    2014-11-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        409.276 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6FC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4NLF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6FC P      P      P 0 1 N N N 15.185 6.923  7.825  4.963  -0.320 0.229  P      6FC 1  
6FC OP1    OP1    O 0 1 N N N 15.237 7.546  6.456  5.424  -1.592 -0.833 OP1    6FC 2  
6FC "O5'"  "O5'"  O 0 1 N N N 16.166 7.657  8.849  3.400  -0.287 -0.490 "O5'"  6FC 3  
6FC "C5'"  "C5'"  C 0 1 N N N 16.185 9.070  9.016  2.424  0.424  0.274  "C5'"  6FC 4  
6FC "C4'"  "C4'"  C 0 1 N N R 16.953 9.463  10.230 1.115  0.497  -0.514 "C4'"  6FC 5  
6FC "C3'"  "C3'"  C 0 1 N N R 18.391 8.994  10.313 0.083  1.368  0.236  "C3'"  6FC 6  
6FC "O3'"  "O3'"  O 0 1 N N N 19.244 9.842  9.543  0.059  2.692  -0.302 "O3'"  6FC 7  
6FC "C7'"  "C7'"  C 0 1 N N N 19.461 10.689 13.949 -2.731 3.067  0.296  "C7'"  6FC 8  
6FC "F1'"  "F1'"  F 0 1 N N N 19.774 11.902 14.373 -1.530 3.701  0.633  "F1'"  6FC 9  
6FC "F2'"  "F2'"  F 0 1 N N N 20.521 9.898  14.071 -3.306 2.515  1.446  "F2'"  6FC 10 
6FC "F3'"  "F3'"  F 0 1 N N N 18.510 10.237 14.764 -3.611 4.002  -0.262 "F3'"  6FC 11 
6FC "C2'"  "C2'"  C 0 1 N N R 18.634 9.059  11.767 -1.265 0.656  -0.017 "C2'"  6FC 12 
6FC "S2'"  "S2'"  S 0 1 N N N 18.941 10.800 12.263 -2.404 1.751  -0.908 "S2'"  6FC 13 
6FC "C1'"  "C1'"  C 0 1 N N R 17.368 8.497  12.320 -0.888 -0.561 -0.891 "C1'"  6FC 14 
6FC "O4'"  "O4'"  O 0 1 N N N 16.320 8.898  11.396 0.504  -0.809 -0.597 "O4'"  6FC 15 
6FC N1     N1     N 0 1 N N N 17.369 7.052  12.460 -1.702 -1.723 -0.525 N1     6FC 16 
6FC C6     C6     C 0 1 N N N 16.714 6.266  11.576 -2.583 -2.243 -1.424 C6     6FC 17 
6FC C5     C5     C 0 1 N N N 16.713 4.885  11.732 -3.330 -3.318 -1.074 C5     6FC 18 
6FC C4     C4     C 0 1 N N N 17.422 4.393  12.828 -3.173 -3.868 0.214  C4     6FC 19 
6FC N4     N4     N 0 1 N N N 17.439 3.016  13.022 -3.918 -4.959 0.596  N4     6FC 20 
6FC N3     N3     N 0 1 N N N 18.061 5.195  13.686 -2.303 -3.327 1.057  N3     6FC 21 
6FC C2     C2     C 0 1 N N N 18.021 6.502  13.492 -1.571 -2.273 0.696  C2     6FC 22 
6FC O2     O2     O 0 1 N N N 18.593 7.244  14.275 -0.774 -1.797 1.487  O2     6FC 23 
6FC OP2    OP2    O 0 1 N N N 15.503 5.457  7.928  5.210  1.318  -0.233 OP2    6FC 24 
6FC H1     H1     H 0 1 N N N 14.643 7.085  5.875  6.332  -1.900 -0.706 H1     6FC 25 
6FC "H5'1" "H5'1" H 0 0 N N N 16.653 9.529  8.132  2.252  -0.095 1.217  "H5'1" 6FC 26 
6FC "H5'2" "H5'2" H 0 0 N N N 15.151 9.433  9.113  2.784  1.433  0.474  "H5'2" 6FC 27 
6FC "H4'1" "H4'1" H 0 0 N N N 16.944 10.560 10.310 1.295  0.897  -1.512 "H4'1" 6FC 28 
6FC "H3'1" "H3'1" H 0 0 N N N 18.459 7.953  9.965  0.309  1.394  1.303  "H3'1" 6FC 29 
6FC H2     H2     H 0 1 N N N 20.140 9.533  9.607  0.900  3.163  -0.224 H2     6FC 30 
6FC "H2'1" "H2'1" H 0 0 N N N 19.511 8.467  12.068 -1.708 0.331  0.925  "H2'1" 6FC 31 
6FC "H1'1" "H1'1" H 0 0 N N N 17.179 8.955  13.302 -1.017 -0.324 -1.947 "H1'1" 6FC 32 
6FC H61    H61    H 0 1 N N N 16.189 6.713  10.745 -2.685 -1.804 -2.406 H61    6FC 33 
6FC H51    H51    H 0 1 N N N 16.194 4.232  11.046 -4.034 -3.746 -1.772 H51    6FC 34 
6FC H41    H41    H 0 1 N N N 17.929 2.627  13.802 -4.554 -5.352 -0.022 H41    6FC 35 
6FC H42    H42    H 0 1 N N N 16.962 2.415  12.381 -3.809 -5.335 1.483  H42    6FC 36 
6FC H3     H3     H 0 1 N N N 15.438 5.181  8.835  5.188  1.465  -1.189 H3     6FC 37 
6FC OP3    OP3    O 0 1 N Y N ?      ?      ?      6.525  -0.353 0.948  OP3    6FC 38 
6FC H4     H4     H 0 1 N N N ?      ?      ?      4.357  -0.633 1.531  H4     6FC 39 
6FC H5     H5     H 0 1 N N N ?      ?      ?      6.755  -1.202 1.350  H5     6FC 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6FC P     OP1    SING N N 1  
6FC P     "O5'"  SING N N 2  
6FC P     OP2    SING N N 3  
6FC "O5'" "C5'"  SING N N 4  
6FC "C5'" "C4'"  SING N N 5  
6FC "C4'" "C3'"  SING N N 6  
6FC "C4'" "O4'"  SING N N 7  
6FC "C3'" "O3'"  SING N N 8  
6FC "C3'" "C2'"  SING N N 9  
6FC "C7'" "F1'"  SING N N 10 
6FC "C7'" "F2'"  SING N N 11 
6FC "C7'" "F3'"  SING N N 12 
6FC "C7'" "S2'"  SING N N 13 
6FC "C2'" "S2'"  SING N N 14 
6FC "C2'" "C1'"  SING N N 15 
6FC "C1'" "O4'"  SING N N 16 
6FC "C1'" N1     SING N N 17 
6FC N1    C6     SING N N 18 
6FC N1    C2     SING N N 19 
6FC C6    C5     DOUB N N 20 
6FC C5    C4     SING N N 21 
6FC C4    N4     SING N N 22 
6FC C4    N3     DOUB N N 23 
6FC N3    C2     SING N N 24 
6FC C2    O2     DOUB N N 25 
6FC OP1   H1     SING N N 26 
6FC "C5'" "H5'1" SING N N 27 
6FC "C5'" "H5'2" SING N N 28 
6FC "C4'" "H4'1" SING N N 29 
6FC "C3'" "H3'1" SING N N 30 
6FC "O3'" H2     SING N N 31 
6FC "C2'" "H2'1" SING N N 32 
6FC "C1'" "H1'1" SING N N 33 
6FC C6    H61    SING N N 34 
6FC C5    H51    SING N N 35 
6FC N4    H41    SING N N 36 
6FC N4    H42    SING N N 37 
6FC OP2   H3     SING N N 38 
6FC P     OP3    SING N N 39 
6FC P     H4     SING N N 40 
6FC OP3   H5     SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6FC SMILES           ACDLabs              12.01 "FC(F)(F)SC2C(O)C(OC2N1C(=O)N=C(N)C=C1)COP(O)(O)O"                                                                                                             
6FC InChI            InChI                1.03  "InChI=1S/C10H15F3N3O7PS/c11-10(12,13)25-7-6(17)4(3-22-24(19,20)21)23-8(7)16-2-1-5(14)15-9(16)18/h1-2,4,6-8,17,19-21,24H,3H2,(H2,14,15,18)/t4-,6-,7-,8-/m1/s1" 
6FC InChIKey         InChI                1.03  RXIZMKBDEBXDBO-XVFCMESISA-N                                                                                                                                    
6FC SMILES_CANONICAL CACTVS               3.385 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[PH](O)(O)O)[C@@H](O)[C@H]2SC(F)(F)F"                                                                                        
6FC SMILES           CACTVS               3.385 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[PH](O)(O)O)[CH](O)[CH]2SC(F)(F)F"                                                                                              
6FC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(O)(O)O)O)SC(F)(F)F"                                                                                         
6FC SMILES           "OpenEye OEToolkits" 1.7.6 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(O)(O)O)O)SC(F)(F)F"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6FC "SYSTEMATIC NAME" ACDLabs              12.01 "2'-thio-2'-S-(trifluoromethyl)-5'-O-(trihydroxy-lambda~5~-phosphanyl)cytidine"                                                               
6FC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-azanyl-1-[(2R,3R,4R,5R)-4-oxidanyl-3-(trifluoromethylsulfanyl)-5-[[tris(oxidanyl)-$l^{5}-phosphanyl]oxymethyl]oxolan-2-yl]pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6FC "Create component" 2013-11-20 RCSB 
6FC "Initial release"  2014-11-19 RCSB 
# 
