data_5OC
# 
_chem_comp.id                                    5OC 
_chem_comp.name                                  
;2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-08-15 
_chem_comp.pdbx_modified_date                    2011-11-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.197 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5OC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3TAB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5OC P      P      P 0 1 N N N -69.495 14.529 42.122 4.274  -1.050 -0.066 P      5OC 1  
5OC N1     N1     N 0 1 N N N -73.031 10.288 43.484 -2.284 0.307  -0.415 N1     5OC 2  
5OC C2     C2     C 0 1 N N N -73.661 9.191  44.081 -2.286 -0.148 0.852  C2     5OC 3  
5OC O2     O2     O 0 1 N N N -74.883 9.046  43.928 -1.328 0.082  1.572  O2     5OC 4  
5OC N3     N3     N 0 1 N N N -72.924 8.317  44.804 -3.315 -0.843 1.333  N3     5OC 5  
5OC C4     C4     C 0 1 N N N -71.610 8.509  44.946 -4.370 -1.107 0.574  C4     5OC 6  
5OC N4     N4     N 0 1 N N N -70.923 7.619  45.663 -5.427 -1.827 1.084  N4     5OC 7  
5OC C5     C5     C 0 1 N N N -70.944 9.624  44.358 -4.403 -0.645 -0.761 C5     5OC 8  
5OC O5     O5     O 0 1 N N N -69.644 9.826  44.489 -5.477 -0.905 -1.557 O5     5OC 9  
5OC C6     C6     C 0 1 N N N -71.687 10.483 43.646 -3.347 0.062  -1.237 C6     5OC 10 
5OC "C1'"  "C1'"  C 0 1 N N R -73.852 11.236 42.714 -1.140 1.074  -0.912 "C1'"  5OC 11 
5OC "C2'"  "C2'"  C 0 1 N N N -74.517 12.309 43.575 -1.025 2.404  -0.141 "C2'"  5OC 12 
5OC "C3'"  "C3'"  C 0 1 N N S -73.649 13.528 43.337 0.388  2.356  0.489  "C3'"  5OC 13 
5OC "O3'"  "O3'"  O 0 1 N N N -74.389 14.735 43.513 1.029  3.631  0.400  "O3'"  5OC 14 
5OC "C4'"  "C4'"  C 0 1 N N R -73.232 13.333 41.889 1.107  1.313  -0.404 "C4'"  5OC 15 
5OC "O4'"  "O4'"  O 0 1 N N N -73.006 11.911 41.783 0.076  0.342  -0.684 "O4'"  5OC 16 
5OC "C5'"  "C5'"  C 0 1 N N N -72.005 14.104 41.462 2.270  0.667  0.352  "C5'"  5OC 17 
5OC "O5'"  "O5'"  O 0 1 N N N -70.949 13.959 42.430 2.985  -0.203 -0.528 "O5'"  5OC 18 
5OC OP1    OP1    O 0 1 N N N -69.684 15.952 41.749 5.471  -0.043 0.312  OP1    5OC 19 
5OC OP3    OP3    O 0 1 N N N -68.603 14.180 43.256 3.927  -1.870 1.116  OP3    5OC 20 
5OC HN4    HN4    H 0 1 N N N -71.393 6.838  46.074 -5.401 -2.142 2.001  HN4    5OC 21 
5OC HN4A   HN4A   H 0 0 N N N -69.938 7.732  45.789 -6.197 -2.018 0.527  HN4A   5OC 22 
5OC H6     H6     H 0 1 N N N -71.217 11.343 43.193 -3.347 0.426  -2.254 H6     5OC 23 
5OC "H1'"  "H1'"  H 0 1 N N N -74.646 10.647 42.232 -1.261 1.272  -1.977 "H1'"  5OC 24 
5OC "H2'"  "H2'"  H 0 1 N N N -75.559 12.487 43.269 -1.110 3.249  -0.824 "H2'"  5OC 25 
5OC "H2'A" "H2'A" H 0 0 N N N -74.534 12.024 44.637 -1.789 2.462  0.634  "H2'A" 5OC 26 
5OC "H3'"  "H3'"  H 0 1 N N N -72.803 13.618 44.034 0.342  2.018  1.523  "H3'"  5OC 27 
5OC "HO3'" "HO3'" H 0 0 N N N -73.821 15.481 43.358 0.565  4.338  0.870  "HO3'" 5OC 28 
5OC "H4'"  "H4'"  H 0 1 N N N -74.012 13.722 41.218 1.460  1.775  -1.326 "H4'"  5OC 29 
5OC "H5'"  "H5'"  H 0 1 N N N -71.658 13.718 40.492 2.940  1.444  0.720  "H5'"  5OC 30 
5OC "H5'A" "H5'A" H 0 0 N N N -72.264 15.169 41.370 1.882  0.093  1.194  "H5'A" 5OC 31 
5OC HOP1   HOP1   H 0 0 N N N -69.170 16.503 42.328 5.751  0.526  -0.418 HOP1   5OC 32 
5OC OP2    OP2    O 0 1 N Y N -68.094 15.240 41.421 4.741  -2.013 -1.269 OP2    5OC 33 
5OC H13    H13    H 0 1 N N N -69.398 10.618 44.026 -6.174 -1.415 -1.122 H13    5OC 34 
5OC HOP2   HOP2   H 0 0 N Y N -67.355 15.130 42.008 5.515  -2.555 -1.060 HOP2   5OC 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5OC P     "O5'"  SING N N 1  
5OC P     OP3    DOUB N N 2  
5OC N1    C6     SING N N 3  
5OC N1    C2     SING N N 4  
5OC C2    N3     SING N N 5  
5OC O2    C2     DOUB N N 6  
5OC N3    C4     DOUB N N 7  
5OC C4    N4     SING N N 8  
5OC N4    HN4    SING N N 9  
5OC N4    HN4A   SING N N 10 
5OC C5    C4     SING N N 11 
5OC C5    O5     SING N N 12 
5OC C6    C5     DOUB N N 13 
5OC C6    H6     SING N N 14 
5OC "C1'" N1     SING N N 15 
5OC "C1'" "C2'"  SING N N 16 
5OC "C1'" "H1'"  SING N N 17 
5OC "C2'" "H2'"  SING N N 18 
5OC "C2'" "H2'A" SING N N 19 
5OC "C3'" "C2'"  SING N N 20 
5OC "C3'" "O3'"  SING N N 21 
5OC "C3'" "H3'"  SING N N 22 
5OC "O3'" "HO3'" SING N N 23 
5OC "C4'" "C3'"  SING N N 24 
5OC "C4'" "H4'"  SING N N 25 
5OC "O4'" "C1'"  SING N N 26 
5OC "O4'" "C4'"  SING N N 27 
5OC "C5'" "C4'"  SING N N 28 
5OC "C5'" "O5'"  SING N N 29 
5OC "C5'" "H5'"  SING N N 30 
5OC "C5'" "H5'A" SING N N 31 
5OC OP1   P      SING N N 32 
5OC OP1   HOP1   SING N N 33 
5OC P     OP2    SING N N 34 
5OC O5    H13    SING N N 35 
5OC OP2   HOP2   SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5OC SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C(O)=C1)CC2O"                                                                                                       
5OC InChI            InChI                1.03  "InChI=1S/C9H14N3O8P/c10-8-5(14)2-12(9(15)11-8)7-1-4(13)6(20-7)3-19-21(16,17)18/h2,4,6-7,13-14H,1,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6+,7+/m0/s1" 
5OC InChIKey         InChI                1.03  IHMAXICTBCXOER-UBKIQSJTSA-N                                                                                                                       
5OC SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                                        
5OC SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                            
5OC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)O)COP(=O)(O)O)O"                                                                                          
5OC SMILES           "OpenEye OEToolkits" 1.7.2 "C1C(C(OC1N2C=C(C(=NC2=O)N)O)COP(=O)(O)O)O"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5OC "SYSTEMATIC NAME" ACDLabs              12.01 
;2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate)
;
5OC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,5R)-5-(4-azanyl-5-oxidanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5OC "Create component" 2011-08-15 RCSB 
# 
