data_54C
# 
_chem_comp.id                                    54C 
_chem_comp.name                                  "(betaR)-beta-hydroxy-1-{2-[(2R)-oxiran-2-yl]propan-2-yl}-L-tryptophan" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H20 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               TRP 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-07-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        304.341 
_chem_comp.one_letter_code                       W 
_chem_comp.three_letter_code                     54C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5CS2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
54C CA  CA  C 0 1 N N S Y N N 31.696 -33.709 -2.549  -2.909 0.239  -0.566 C1  54C 1  
54C CB  CB  C 0 1 N N R N N N 32.485 -33.385 -3.841  -2.113 0.164  0.738  C59 54C 2  
54C CG  CG  C 0 1 Y N N N N N 32.578 -34.510 -4.843  -0.686 -0.213 0.435  C60 54C 3  
54C N   N   N 0 1 N N N Y Y N 31.807 -32.534 -1.684  -2.243 1.163  -1.494 N2  54C 4  
54C C   C   C 0 1 N N N Y N Y 32.123 -35.010 -1.900  -4.302 0.734  -0.277 C32 54C 5  
54C O   O   O 0 1 N N N Y N Y 33.209 -34.946 -1.367  -4.585 1.892  -0.475 O33 54C 6  
54C CD1 CD1 C 0 1 Y N N N N N 31.853 -34.658 -5.953  0.345  0.631  0.271  C61 54C 7  
54C NE2 NE2 N 0 1 Y N N N N N 32.278 -35.682 -6.660  1.488  -0.075 0.008  N62 54C 8  
54C C1  C1  C 0 1 N N N N N N 31.624 -36.116 -7.913  2.807  0.518  -0.230 C63 54C 9  
54C C2  C2  C 0 1 N N N N N N 31.068 -37.555 -7.729  3.794  0.004  0.820  C64 54C 10 
54C C3  C3  C 0 1 N N N N N N 30.545 -35.098 -8.393  3.297  0.126  -1.625 C65 54C 11 
54C CE2 CE2 C 0 1 Y N N N N N 33.383 -36.224 -6.088  1.213  -1.424 -0.003 C66 54C 12 
54C CD2 CD2 C 0 1 Y N N N N N 33.666 -35.549 -4.908  -0.159 -1.570 0.269  C67 54C 13 
54C CE3 CE3 C 0 1 Y N N N N N 34.768 -35.830 -4.103  -0.727 -2.844 0.321  C68 54C 14 
54C CZ3 CZ3 C 0 1 Y N N N N N 35.570 -36.913 -4.490  0.054  -3.945 0.107  C69 54C 15 
54C C70 C70 C 0 1 Y N N N N N 35.281 -37.639 -5.652  1.409  -3.806 -0.162 C70 54C 16 
54C CH2 CH2 C 0 1 Y N N N N N 34.186 -37.310 -6.462  1.991  -2.558 -0.214 C71 54C 17 
54C OB  OB  O 0 1 N N N N N N 31.975 -32.174 -4.423  -2.142 1.436  1.388  O72 54C 18 
54C C4  C4  C 0 1 N N R N N N 32.698 -36.066 -9.040  2.706  2.041  -0.133 C73 54C 19 
54C C5  C5  C 0 1 N N N N N N 33.161 -34.608 -9.451  3.989  2.853  -0.321 C74 54C 20 
54C O6  O6  O 0 1 N N N N N N 32.399 -35.462 -10.268 3.368  2.684  0.957  O75 54C 21 
54C HA  H1  H 0 1 N N N Y N N 30.640 -33.819 -2.838  -2.962 -0.752 -1.017 H1  54C 22 
54C H1  H2  H 0 1 N N N N N N 33.516 -33.177 -3.517  -2.556 -0.588 1.392  H2  54C 23 
54C H   H3  H 0 1 N N N Y Y N 31.309 -32.698 -0.832  -2.182 2.090  -1.098 H3  54C 24 
54C H2  H4  H 0 1 N Y N Y Y N 32.770 -32.361 -1.479  -1.331 0.820  -1.754 H4  54C 25 
54C H9  H9  H 0 1 N N N N N N 31.027 -34.021 -6.234  0.282  1.707  0.336  H9  54C 26 
54C H10 H10 H 0 1 N N N N N N 30.314 -37.558 -6.928  3.865  -1.082 0.751  H10 54C 27 
54C H11 H11 H 0 1 N N N N N N 30.606 -37.892 -8.669  4.775  0.445  0.643  H11 54C 28 
54C H12 H12 H 0 1 N N N N N N 31.890 -38.234 -7.460  3.445  0.283  1.814  H12 54C 29 
54C H13 H13 H 0 1 N N N N N N 29.728 -35.055 -7.658  3.369  -0.959 -1.694 H13 54C 30 
54C H14 H14 H 0 1 N N N N N N 31.000 -34.102 -8.494  2.594  0.492  -2.374 H14 54C 31 
54C H15 H15 H 0 1 N N N N N N 30.146 -35.419 -9.366  4.278  0.567  -1.803 H15 54C 32 
54C H16 H16 H 0 1 N N N N N N 34.993 -35.243 -3.225  -1.780 -2.960 0.530  H16 54C 33 
54C H17 H17 H 0 1 N N N N N N 36.420 -37.190 -3.885  -0.385 -4.930 0.147  H17 54C 34 
54C H18 H18 H 0 1 N N N N N N 35.914 -38.469 -5.929  2.014  -4.685 -0.330 H18 54C 35 
54C H19 H19 H 0 1 N N N N N N 33.966 -37.880 -7.353  3.047  -2.460 -0.419 H19 54C 36 
54C H20 H20 H 0 1 N N N N N N 31.934 -31.496 -3.759  -1.762 2.155  0.863  H20 54C 37 
54C H21 H21 H 0 1 N N N N N N 33.493 -36.824 -8.989  1.773  2.477  -0.489 H21 54C 38 
54C H22 H22 H 0 1 N N N N N N 34.215 -34.398 -9.686  4.913  2.307  -0.514 H22 54C 39 
54C H23 H23 H 0 1 N N N N N N 32.706 -33.721 -8.985  3.908  3.829  -0.801 H23 54C 40 
54C OXT OXT O 0 1 N Y N Y N Y ?      ?       ?       -5.229 -0.111 0.201  O1  54C 41 
54C HXT H5  H 0 1 N Y N Y N Y ?      ?       ?       -6.109 0.253  0.372  H5  54C 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
54C O6  C5  SING N N 1  
54C O6  C4  SING N N 2  
54C C5  C4  SING N N 3  
54C C4  C1  SING N N 4  
54C C3  C1  SING N N 5  
54C C1  C2  SING N N 6  
54C C1  NE2 SING N N 7  
54C NE2 CE2 SING Y N 8  
54C NE2 CD1 SING Y N 9  
54C CH2 CE2 DOUB Y N 10 
54C CH2 C70 SING Y N 11 
54C CE2 CD2 SING Y N 12 
54C CD1 CG  DOUB Y N 13 
54C C70 CZ3 DOUB Y N 14 
54C CD2 CG  SING Y N 15 
54C CD2 CE3 DOUB Y N 16 
54C CG  CB  SING N N 17 
54C CZ3 CE3 SING Y N 18 
54C OB  CB  SING N N 19 
54C CB  CA  SING N N 20 
54C CA  C   SING N N 21 
54C CA  N   SING N N 22 
54C C   O   DOUB N N 23 
54C CA  HA  SING N N 24 
54C CB  H1  SING N N 25 
54C N   H   SING N N 26 
54C N   H2  SING N N 27 
54C CD1 H9  SING N N 28 
54C C2  H10 SING N N 29 
54C C2  H11 SING N N 30 
54C C2  H12 SING N N 31 
54C C3  H13 SING N N 32 
54C C3  H14 SING N N 33 
54C C3  H15 SING N N 34 
54C CE3 H16 SING N N 35 
54C CZ3 H17 SING N N 36 
54C C70 H18 SING N N 37 
54C CH2 H19 SING N N 38 
54C OB  H20 SING N N 39 
54C C4  H21 SING N N 40 
54C C5  H22 SING N N 41 
54C C5  H23 SING N N 42 
54C C   OXT SING N N 43 
54C OXT HXT SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
54C SMILES           ACDLabs              12.01 "C(C(=O)O)(N)C(c1cn(c2c1cccc2)C(C)(C)C3CO3)O"                                                                                                    
54C InChI            InChI                1.03  "InChI=1S/C16H20N2O4/c1-16(2,12-8-22-12)18-7-10(14(19)13(17)15(20)21)9-5-3-4-6-11(9)18/h3-7,12-14,19H,8,17H2,1-2H3,(H,20,21)/t12-,13-,14+/m0/s1" 
54C InChIKey         InChI                1.03  RPWCRDPTKUYOFA-MELADBBJSA-N                                                                                                                      
54C SMILES_CANONICAL CACTVS               3.385 "CC(C)([C@@H]1CO1)n2cc([C@@H](O)[C@H](N)C(O)=O)c3ccccc23"                                                                                        
54C SMILES           CACTVS               3.385 "CC(C)([CH]1CO1)n2cc([CH](O)[CH](N)C(O)=O)c3ccccc23"                                                                                             
54C SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)([C@@H]1CO1)n2cc(c3c2cccc3)[C@H]([C@@H](C(=O)O)N)O"                                                                                        
54C SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)(C1CO1)n2cc(c3c2cccc3)C(C(C(=O)O)N)O"                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
54C "SYSTEMATIC NAME" ACDLabs              12.01 "(betaR)-beta-hydroxy-1-{2-[(2R)-oxiran-2-yl]propan-2-yl}-L-tryptophan"                       
54C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S,3R)-2-azanyl-3-oxidanyl-3-[1-[2-[(2R)-oxiran-2-yl]propan-2-yl]indol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
54C "Create component"       2015-07-23 EBI  
54C "Initial release"        2015-10-28 RCSB 
54C "Modify one letter code" 2019-05-07 EBI  
54C "Modify linking type"    2019-10-01 PDBE 
54C "Modify backbone"        2023-11-03 PDBE 
54C "Modify PCM"             2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            54C 
_pdbx_chem_comp_pcm.modified_residue_id                TRP 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
