data_1YC
# 
_chem_comp.id                                    1YC 
_chem_comp.name                                  
"2-amino-9-[(1R,3R,6R,8R,9R,11S,14R,16R,17R,18R)-16-(6-amino-9H-purin-9-yl)-3,11,17,18-tetrahydroxy-3,11-dioxido-2,4,7,10,12,15-hexaoxa-3,11-diphosphatricyclo[12.2.1.1~6,9~]octadec-8-yl]-1,9-dihydro-6H-purin-6-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N10 O13 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-08-02 
_chem_comp.pdbx_modified_date                    2013-08-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        674.411 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1YC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4LOI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1YC OAC   OAC O 0 1 N N N 49.220 32.702 15.994 5.144  1.722  -0.548 OAC   1YC 1  
1YC CBC   CBC C 0 1 N N N 48.428 33.610 15.741 4.664  0.602  -0.513 CBC   1YC 2  
1YC NAT   NAT N 0 1 N N N 48.971 34.790 15.267 5.273  -0.391 0.171  NAT   1YC 3  
1YC CBA   CBA C 0 1 N N N 48.124 35.831 14.951 4.724  -1.638 0.208  CBA   1YC 4  
1YC NAA   NAA N 0 1 N N N 48.648 36.959 14.488 5.365  -2.628 0.911  NAA   1YC 5  
1YC NAS   NAS N 0 1 N N N 46.794 35.688 15.162 3.599  -1.921 -0.409 NAS   1YC 6  
1YC CBG   CBG C 0 1 Y N N 46.281 34.529 15.651 2.940  -0.988 -1.106 CBG   1YC 7  
1YC CBE   CBE C 0 1 Y N N 47.089 33.504 15.940 3.452  0.312  -1.182 CBE   1YC 8  
1YC NAR   NAR N 0 1 Y N N 46.325 32.523 16.436 2.593  1.040  -1.936 NAR   1YC 9  
1YC CAL   CAL C 0 1 Y N N 45.049 32.928 16.411 1.610  0.280  -2.323 CAL   1YC 10 
1YC NBQ   NBQ N 0 1 Y N N 45.034 34.179 15.961 1.780  -0.982 -1.833 NBQ   1YC 11 
1YC CBO   CBO C 0 1 N N R 43.812 34.997 15.752 0.885  -2.122 -2.045 CBO   1YC 12 
1YC OAX   OAX O 0 1 N N N 43.064 35.090 16.941 0.121  -1.925 -3.238 OAX   1YC 13 
1YC CBK   CBK C 0 1 N N R 41.655 34.784 16.661 -1.279 -2.067 -3.010 CBK   1YC 14 
1YC CAN   CAN C 0 1 N N N 41.219 33.441 17.280 -1.974 -0.713 -3.185 CAN   1YC 15 
1YC OP3   OP3 O 0 1 N N N 42.060 32.397 16.843 -2.145 -0.104 -1.907 OP3   1YC 16 
1YC "P2'" P2* P 0 1 N N N 41.718 30.827 17.106 -3.353 0.891  -1.545 "P2'" 1YC 17 
1YC "O2'" O2* O 0 1 N N N 40.789 30.433 15.919 -3.276 1.272  0.021  "O2'" 1YC 18 
1YC OP2   OP2 O 0 1 N N N 40.933 30.734 18.402 -4.758 0.168  -1.854 OP2   1YC 19 
1YC OP1   OP1 O 0 1 N N N 43.066 30.107 17.047 -3.241 2.122  -2.360 OP1   1YC 20 
1YC CBI   CBI C 0 1 N N R 41.542 34.733 15.180 -1.466 -2.546 -1.556 CBI   1YC 21 
1YC OAE   OAE O 0 1 N N N 41.270 36.043 14.697 -1.733 -3.949 -1.522 OAE   1YC 22 
1YC CBM   CBM C 0 1 N N R 42.911 34.304 14.766 -0.111 -2.231 -0.875 CBM   1YC 23 
1YC OAZ   OAZ O 0 1 N N N 43.190 34.749 13.418 0.252  -3.285 0.015  OAZ   1YC 24 
1YC PBS   PBS P 0 1 N N N 43.363 33.657 12.248 -0.051 -3.203 1.599  PBS   1YC 25 
1YC OAH   OAH O 0 1 N N N 44.843 33.170 12.396 1.333  -3.286 2.417  OAH   1YC 26 
1YC OAI   OAI O 0 1 N N N 43.047 34.248 10.884 -0.928 -4.327 1.994  OAI   1YC 27 
1YC "O5'" O5* O 0 1 N N N 42.408 32.364 12.544 -0.783 -1.808 1.920  "O5'" 1YC 28 
1YC "C5'" C5* C 0 1 N N N 41.194 32.333 11.950 -1.212 -1.409 3.219  "C5'" 1YC 29 
1YC "C4'" C4* C 0 1 N N R 40.429 31.114 12.457 -2.363 -0.409 3.077  "C4'" 1YC 30 
1YC "O4'" O4* O 0 1 N N N 41.241 29.915 12.406 -1.872 0.919  3.241  "O4'" 1YC 31 
1YC "C3'" C3* C 0 1 N N R 40.130 31.333 13.897 -2.942 -0.516 1.651  "C3'" 1YC 32 
1YC "O3'" O3* O 0 1 N N N 38.942 30.643 14.278 -4.366 -0.407 1.679  "O3'" 1YC 33 
1YC "C2'" C2* C 0 1 N N R 41.243 30.738 14.599 -2.320 0.688  0.900  "C2'" 1YC 34 
1YC "C1'" C1* C 0 1 N N R 41.491 29.504 13.720 -1.921 1.667  2.021  "C1'" 1YC 35 
1YC N9    N9  N 0 1 Y N N 42.873 29.091 13.690 -0.604 2.242  1.735  N9    1YC 36 
1YC C8    C8  C 0 1 Y N N 43.935 29.818 13.297 0.594  1.779  2.189  C8    1YC 37 
1YC N7    N7  N 0 1 Y N N 45.048 29.080 13.452 1.559  2.529  1.742  N7    1YC 38 
1YC C5    C5  C 0 1 Y N N 44.686 27.880 13.943 1.042  3.519  0.975  C5    1YC 39 
1YC C4    C4  C 0 1 Y N N 43.334 27.894 14.078 -0.351 3.343  0.957  C4    1YC 40 
1YC N3    N3  N 0 1 Y N N 42.669 26.830 14.567 -1.100 4.192  0.260  N3    1YC 41 
1YC C2    C2  C 0 1 Y N N 43.412 25.694 14.890 -0.547 5.182  -0.408 C2    1YC 42 
1YC N1    N1  N 0 1 Y N N 44.782 25.688 14.734 0.758  5.385  -0.423 N1    1YC 43 
1YC C6    C6  C 0 1 Y N N 45.395 26.778 14.257 1.586  4.594  0.251  C6    1YC 44 
1YC N6    N6  N 0 1 N N N 46.731 26.787 14.094 2.952  4.813  0.228  N6    1YC 45 
1YC H1    H1  H 0 1 N N N 49.960 34.887 15.155 6.106  -0.216 0.638  H1    1YC 46 
1YC H2    H2  H 0 1 N N N 48.056 37.738 14.283 4.987  -3.520 0.947  H2    1YC 47 
1YC H3    H3  H 0 1 N N N 49.635 37.030 14.344 6.196  -2.434 1.372  H3    1YC 48 
1YC H4    H4  H 0 1 N N N 44.188 32.345 16.703 0.781  0.602  -2.936 H4    1YC 49 
1YC H5    H5  H 0 1 N N N 44.084 35.993 15.373 1.467  -3.040 -2.125 H5    1YC 50 
1YC H6    H6  H 0 1 N N N 41.012 35.585 17.055 -1.701 -2.798 -3.696 H6    1YC 51 
1YC H7    H7  H 0 1 N N N 41.273 33.514 18.376 -1.362 -0.069 -3.816 H7    1YC 52 
1YC H8    H8  H 0 1 N N N 40.184 33.222 16.977 -2.948 -0.862 -3.652 H8    1YC 53 
1YC H9    H9  H 0 1 N N N 41.418 30.211 19.030 -4.871 -0.093 -2.779 H9    1YC 54 
1YC H10   H10 H 0 1 N N N 40.783 34.004 14.861 -2.272 -1.993 -1.073 H10   1YC 55 
1YC H11   H11 H 0 1 N N N 40.397 36.305 14.966 -2.542 -4.207 -1.984 H11   1YC 56 
1YC H12   H12 H 0 1 N N N 43.016 33.213 14.854 -0.175 -1.284 -0.346 H12   1YC 57 
1YC H13   H13 H 0 1 N N N 45.312 33.329 11.585 1.226  -3.234 3.377  H13   1YC 58 
1YC H14   H14 H 0 1 N N N 41.318 32.264 10.859 -1.554 -2.283 3.774  H14   1YC 59 
1YC H15   H15 H 0 1 N N N 40.637 33.249 12.199 -0.383 -0.939 3.749  H15   1YC 60 
1YC H16   H16 H 0 1 N N N 39.499 30.988 11.884 -3.142 -0.620 3.807  H16   1YC 61 
1YC H17   H17 H 0 1 N N N 40.055 32.409 14.114 -2.641 -1.456 1.187  H17   1YC 62 
1YC H18   H18 H 0 1 N N N 38.769 30.795 15.200 -4.804 -1.103 2.188  H18   1YC 63 
1YC H19   H19 H 0 1 N N N 42.126 31.394 14.603 -1.440 0.363  0.351  H19   1YC 64 
1YC H20   H20 H 0 1 N N N 40.831 28.680 14.030 -2.664 2.460  2.103  H20   1YC 65 
1YC H21   H21 H 0 1 N N N 43.899 30.829 12.919 0.724  0.916  2.827  H21   1YC 66 
1YC H22   H22 H 0 1 N N N 42.911 24.814 15.265 -1.184 5.854  -0.965 H22   1YC 67 
1YC H23   H23 H 0 1 N N N 47.108 25.905 14.376 3.546  4.222  0.715  H23   1YC 68 
1YC H24   H24 H 0 1 N N N 46.948 26.950 13.132 3.315  5.558  -0.276 H24   1YC 69 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1YC OAI   PBS   DOUB N N 1  
1YC "C5'" "C4'" SING N N 2  
1YC "C5'" "O5'" SING N N 3  
1YC PBS   OAH   SING N N 4  
1YC PBS   "O5'" SING N N 5  
1YC PBS   OAZ   SING N N 6  
1YC "O4'" "C4'" SING N N 7  
1YC "O4'" "C1'" SING N N 8  
1YC "C4'" "C3'" SING N N 9  
1YC C8    N7    DOUB Y N 10 
1YC C8    N9    SING Y N 11 
1YC OAZ   CBM   SING N N 12 
1YC N7    C5    SING Y N 13 
1YC N9    "C1'" SING N N 14 
1YC N9    C4    SING Y N 15 
1YC "C1'" "C2'" SING N N 16 
1YC "C3'" "O3'" SING N N 17 
1YC "C3'" "C2'" SING N N 18 
1YC C5    C4    DOUB Y N 19 
1YC C5    C6    SING Y N 20 
1YC C4    N3    SING Y N 21 
1YC N6    C6    SING N N 22 
1YC C6    N1    DOUB Y N 23 
1YC NAA   CBA   SING N N 24 
1YC N3    C2    DOUB Y N 25 
1YC "C2'" "O2'" SING N N 26 
1YC OAE   CBI   SING N N 27 
1YC N1    C2    SING Y N 28 
1YC CBM   CBI   SING N N 29 
1YC CBM   CBO   SING N N 30 
1YC CBA   NAS   DOUB N N 31 
1YC CBA   NAT   SING N N 32 
1YC NAS   CBG   SING N N 33 
1YC CBI   CBK   SING N N 34 
1YC NAT   CBC   SING N N 35 
1YC CBG   CBE   DOUB Y N 36 
1YC CBG   NBQ   SING Y N 37 
1YC CBC   CBE   SING N N 38 
1YC CBC   OAC   DOUB N N 39 
1YC CBO   NBQ   SING N N 40 
1YC CBO   OAX   SING N N 41 
1YC "O2'" "P2'" SING N N 42 
1YC CBE   NAR   SING Y N 43 
1YC NBQ   CAL   SING Y N 44 
1YC CAL   NAR   DOUB Y N 45 
1YC CBK   OAX   SING N N 46 
1YC CBK   CAN   SING N N 47 
1YC OP3   "P2'" SING N N 48 
1YC OP3   CAN   SING N N 49 
1YC OP1   "P2'" DOUB N N 50 
1YC "P2'" OP2   SING N N 51 
1YC NAT   H1    SING N N 52 
1YC NAA   H2    SING N N 53 
1YC NAA   H3    SING N N 54 
1YC CAL   H4    SING N N 55 
1YC CBO   H5    SING N N 56 
1YC CBK   H6    SING N N 57 
1YC CAN   H7    SING N N 58 
1YC CAN   H8    SING N N 59 
1YC OP2   H9    SING N N 60 
1YC CBI   H10   SING N N 61 
1YC OAE   H11   SING N N 62 
1YC CBM   H12   SING N N 63 
1YC OAH   H13   SING N N 64 
1YC "C5'" H14   SING N N 65 
1YC "C5'" H15   SING N N 66 
1YC "C4'" H16   SING N N 67 
1YC "C3'" H17   SING N N 68 
1YC "O3'" H18   SING N N 69 
1YC "C2'" H19   SING N N 70 
1YC "C1'" H20   SING N N 71 
1YC C8    H21   SING N N 72 
1YC C2    H22   SING N N 73 
1YC N6    H23   SING N N 74 
1YC N6    H24   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1YC SMILES           ACDLabs              12.01 "O=C7NC(=Nc1c7ncn1C5OC6COP(=O)(O)OC4C(O)C(OC4n2c3ncnc(N)c3nc2)COP(=O)(O)OC5C6O)N" 
1YC InChI            InChI                1.03  
;InChI=1S/C20H24N10O13P2/c21-14-8-15(24-3-23-14)29(4-25-8)18-12-10(31)6(40-18)1-38-45(36,37)43-13-11(32)7(2-39-44(34,35)42-12)41-19(13)30-5-26-9-16(30)27-20(22)28-17(9)33/h3-7,10-13,18-19,31-32H,1-2H2,(H,34,35)(H,36,37)(H2,21,23,24)(H3,22,27,28,33)/t6-,7-,10-,11-,12-,13-,18-,19-/m1/s1
;
1YC InChIKey         InChI                1.03  BQZWXNITEWDGCM-INFSMZHSSA-N 
1YC SMILES_CANONICAL CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@@H]5[C@H](O)[C@@H](CO[P](O)(=O)O[C@@H]3[C@@H]4O)O[C@H]5n6cnc7c(N)ncnc67" 
1YC SMILES           CACTVS               3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](CO[P](O)(=O)O[CH]3[CH]4O)O[CH]5n6cnc7c(N)ncnc67" 
1YC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O[C@@H]5[C@@H]([C@@H](COP(=O)(O4)O)O[C@H]5n6cnc7c6N=C(NC7=O)N)O)O)O)N" 
1YC SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(cn2)C3C4C(C(O3)COP(=O)(OC5C(C(COP(=O)(O4)O)OC5n6cnc7c6N=C(NC7=O)N)O)O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1YC "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-9-[(1R,3R,6R,8R,9R,11S,14R,16R,17R,18R)-16-(6-amino-9H-purin-9-yl)-3,11,17,18-tetrahydroxy-3,11-dioxido-2,4,7,10,12,15-hexaoxa-3,11-diphosphatricyclo[12.2.1.1~6,9~]octadec-8-yl]-1,9-dihydro-6H-purin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1YC "Create component" 2013-08-02 RCSB 
1YC "Initial release"  2013-08-14 RCSB 
# 
