data_1GC
# 
_chem_comp.id                                    1GC 
_chem_comp.name                                  "2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H18 N5 O12 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-11-22 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        505.208 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     1GC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PML 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
1GC N1     N1     N 0 1 N N N 32.844 24.290 17.673 7.943  2.026  -0.443 N1     1GC 1  
1GC C2     C2     C 0 1 N N N 32.871 24.953 16.469 7.556  1.051  -1.314 C2     1GC 2  
1GC N2     N2     N 0 1 N N N 33.421 24.306 15.438 8.373  0.739  -2.371 N2     1GC 3  
1GC N3     N3     N 0 1 N N N 32.392 26.172 16.294 6.423  0.400  -1.169 N3     1GC 4  
1GC C4     C4     C 0 1 Y N N 31.894 26.685 17.439 5.595  0.670  -0.154 C4     1GC 5  
1GC C5     C5     C 0 1 Y N N 31.813 26.098 18.688 5.936  1.661  0.774  C5     1GC 6  
1GC C6     C6     C 0 1 N N N 32.302 24.789 18.853 7.158  2.353  0.607  C6     1GC 7  
1GC O6     O6     O 0 1 N N N 32.276 24.090 19.858 7.497  3.220  1.394  O6     1GC 8  
1GC N7     N7     N 0 1 Y N N 31.213 26.950 19.598 4.932  1.723  1.683  N7     1GC 9  
1GC C8     C8     C 0 1 Y N N 30.944 28.021 18.903 4.018  0.850  1.375  C8     1GC 10 
1GC N9     N9     N 0 1 Y N N 31.335 27.923 17.588 4.384  0.175  0.247  N9     1GC 11 
1GC PA     PA     P 0 1 N N N 28.837 31.444 20.606 -2.164 -1.357 0.409  PA     1GC 12 
1GC PB     PB     P 0 1 N N N 26.135 31.773 18.973 -4.795 0.012  0.151  PB     1GC 13 
1GC PG     PG     P 0 1 N N N 24.651 32.975 20.857 -7.120 1.710  -0.556 PG     1GC 14 
1GC "C1'"  "C1'"  C 0 1 N N R 31.183 28.925 16.542 3.619  -0.885 -0.415 "C1'"  1GC 15 
1GC O1A    O1A    O 0 1 N N N 29.383 30.697 21.792 -2.882 -2.780 0.180  O1A    1GC 16 
1GC O1B    O1B    O 0 1 N N N 25.736 30.784 17.953 -4.774 0.326  1.597  O1B    1GC 17 
1GC O1G    O1G    O 0 1 N N N 25.912 33.662 21.237 -7.255 2.724  0.687  O1G    1GC 18 
1GC "C2'"  "C2'"  C 0 1 N N N 29.789 28.958 15.922 4.044  -2.270 0.121  "C2'"  1GC 19 
1GC O2A    O2A    O 0 1 N N N 28.909 32.929 20.611 -2.143 -1.043 1.855  O2A    1GC 20 
1GC O2B    O2B    O 0 1 N N N 26.859 32.995 18.517 -5.513 -1.411 -0.079 O2B    1GC 21 
1GC O2G    O2G    O 0 1 N N N 24.046 31.988 21.790 -7.481 2.483  -1.921 O2G    1GC 22 
1GC "C3'"  "C3'"  C 0 1 N N S 29.081 30.023 16.733 2.726  -3.075 0.167  "C3'"  1GC 23 
1GC "O3'"  "O3'"  O 0 1 N N N 28.023 30.628 15.976 2.805  -4.214 -0.693 "O3'"  1GC 24 
1GC C3A    C3A    C 0 1 N N N 27.084 30.928 20.315 -3.087 -0.061 -0.481 C3A    1GC 25 
1GC O3B    O3B    O 0 1 N N N 24.833 32.303 19.510 -5.610 1.157  -0.635 O3B    1GC 26 
1GC O3G    O3G    O 0 1 N N N 23.641 34.048 20.686 -8.052 0.575  -0.370 O3G    1GC 27 
1GC "C4'"  "C4'"  C 0 1 N N R 30.210 31.013 17.016 1.661  -2.082 -0.347 "C4'"  1GC 28 
1GC "O4'"  "O4'"  O 0 1 N N N 31.404 30.197 17.128 2.217  -0.775 -0.083 "O4'"  1GC 29 
1GC "C5'"  "C5'"  C 0 1 N N N 30.044 31.832 18.278 0.349  -2.266 0.418  "C5'"  1GC 30 
1GC "O5'"  "O5'"  O 0 1 N N N 29.772 30.976 19.395 -0.655 -1.421 -0.148 "O5'"  1GC 31 
1GC HN1    HN1    H 0 1 N N N 33.247 23.375 17.703 8.787  2.484  -0.576 HN1    1GC 32 
1GC HN2    HN2    H 0 1 N N N 33.468 24.744 14.540 9.213  1.210  -2.491 HN2    1GC 33 
1GC HN2A   HN2A   H 0 0 N N N 33.785 23.383 15.564 8.112  0.048  -2.999 HN2A   1GC 34 
1GC H8     H8     H 0 1 N N N 30.464 28.895 19.318 3.106  0.685  1.929  H8     1GC 35 
1GC "H1'"  "H1'"  H 0 1 N N N 31.899 28.672 15.747 3.758  -0.834 -1.495 "H1'"  1GC 36 
1GC HO1A   HO1A   H 0 0 N N N 29.723 31.316 22.427 -2.932 -3.050 -0.747 HO1A   1GC 37 
1GC HO1G   HO1G   H 0 0 N N N 25.763 34.599 21.276 -6.672 3.493  0.632  HO1G   1GC 38 
1GC "H2'"  "H2'"  H 0 1 N N N 29.825 29.217 14.854 4.756  -2.740 -0.558 "H2'"  1GC 39 
1GC "H2'A" "H2'A" H 0 0 N N N 29.285 27.984 16.002 4.471  -2.178 1.120  "H2'A" 1GC 40 
1GC HO2B   HO2B   H 0 0 N N N 26.970 32.965 17.574 -5.562 -1.681 -1.006 HO2B   1GC 41 
1GC HO2G   HO2G   H 0 0 N N N 23.178 32.281 22.043 -8.378 2.843  -1.944 HO2G   1GC 42 
1GC "H3'"  "H3'"  H 0 1 N N N 28.595 29.643 17.644 2.502  -3.382 1.189  "H3'"  1GC 43 
1GC "HO3'" "HO3'" H 0 0 N N N 27.594 31.291 16.504 3.500  -4.842 -0.452 "HO3'" 1GC 44 
1GC H3A    H3A    H 0 1 N N N 27.109 29.859 20.058 -2.601 0.903  -0.325 H3A    1GC 45 
1GC H3AA   H3AA   H 0 0 N N N 26.540 31.117 21.252 -3.102 -0.292 -1.546 H3AA   1GC 46 
1GC "H4'"  "H4'"  H 0 1 N N N 30.238 31.759 16.208 1.500  -2.217 -1.416 "H4'"  1GC 47 
1GC "H5'"  "H5'"  H 0 1 N N N 30.971 32.393 18.470 0.030  -3.306 0.349  "H5'"  1GC 48 
1GC "H5'A" "H5'A" H 0 0 N N N 29.206 32.532 18.147 0.498  -2.001 1.465  "H5'A" 1GC 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
1GC C2    N1     SING N N 1  
1GC N1    C6     SING N N 2  
1GC N1    HN1    SING N N 3  
1GC N2    C2     SING N N 4  
1GC N3    C2     DOUB N N 5  
1GC N2    HN2    SING N N 6  
1GC N2    HN2A   SING N N 7  
1GC N3    C4     SING N N 8  
1GC C4    N9     SING Y N 9  
1GC C4    C5     DOUB Y N 10 
1GC C5    C6     SING N N 11 
1GC C5    N7     SING Y N 12 
1GC C6    O6     DOUB N N 13 
1GC C8    N7     DOUB Y N 14 
1GC N9    C8     SING Y N 15 
1GC C8    H8     SING N N 16 
1GC "C1'" N9     SING N N 17 
1GC "O5'" PA     SING N N 18 
1GC C3A   PA     SING N N 19 
1GC PA    O2A    DOUB N N 20 
1GC PA    O1A    SING N N 21 
1GC O1B   PB     DOUB N N 22 
1GC O2B   PB     SING N N 23 
1GC PB    O3B    SING N N 24 
1GC PB    C3A    SING N N 25 
1GC O3B   PG     SING N N 26 
1GC O3G   PG     DOUB N N 27 
1GC PG    O1G    SING N N 28 
1GC PG    O2G    SING N N 29 
1GC "C2'" "C1'"  SING N N 30 
1GC "C1'" "O4'"  SING N N 31 
1GC "C1'" "H1'"  SING N N 32 
1GC O1A   HO1A   SING N N 33 
1GC O1G   HO1G   SING N N 34 
1GC "C2'" "C3'"  SING N N 35 
1GC "C2'" "H2'"  SING N N 36 
1GC "C2'" "H2'A" SING N N 37 
1GC O2B   HO2B   SING N N 38 
1GC O2G   HO2G   SING N N 39 
1GC "O3'" "C3'"  SING N N 40 
1GC "C3'" "C4'"  SING N N 41 
1GC "C3'" "H3'"  SING N N 42 
1GC "O3'" "HO3'" SING N N 43 
1GC C3A   H3A    SING N N 44 
1GC C3A   H3AA   SING N N 45 
1GC "C4'" "O4'"  SING N N 46 
1GC "C4'" "C5'"  SING N N 47 
1GC "C4'" "H4'"  SING N N 48 
1GC "C5'" "O5'"  SING N N 49 
1GC "C5'" "H5'"  SING N N 50 
1GC "C5'" "H5'A" SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
1GC SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O"                                                                                                                                            
1GC SMILES_CANONICAL CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                     
1GC SMILES           CACTVS               3.370 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)O3"                                                                                                                         
1GC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@@](=O)(C[P@](=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N"                                                                                                                    
1GC SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)N=C(NC2=O)N"                                                                                                                                        
1GC InChI            InChI                1.03  "InChI=1S/C11H18N5O12P3/c12-11-14-9-8(10(18)15-11)13-3-16(9)7-1-5(17)6(27-7)2-26-29(19,20)4-30(21,22)28-31(23,24)25/h3,5-7,17H,1-2,4H2,(H,19,20)(H,21,22)(H2,23,24,25)(H3,12,14,15,18)/t5-,6+,7+/m0/s1" 
1GC InChIKey         InChI                1.03  JTBKCZGNQPBEJY-RRKCRQDMSA-N                                                                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
1GC "SYSTEMATIC NAME" ACDLabs              12.01 "2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine"                                         
1GC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methoxy-[[hydroxy(phosphonooxy)phosphoryl]methyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
1GC "Create component"     2010-11-22 RCSB 
1GC "Modify aromatic_flag" 2011-06-04 RCSB 
1GC "Modify descriptor"    2011-06-04 RCSB 
# 
