data_0DC
# 
_chem_comp.id                                    0DC 
_chem_comp.name                                  
;2'-DEOXY-L-RIBO-FURANOSYL CYTOSINE-5'-MONOPHOSPHATE
;
_chem_comp.type                                  "L-DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C9 H14 N3 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-07-16 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        307.197 
_chem_comp.one_letter_code                       C 
_chem_comp.three_letter_code                     0DC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1FV7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0DC OP3    O3P    O 0 1 N Y N 2.867  -4.126 -5.719 4.723  1.691  -1.320 OP3    0DC 1  
0DC P      P      P 0 1 N N N 4.181  -4.721 -5.009 4.190  0.861  -0.048 P      0DC 2  
0DC OP1    O1P    O 0 1 N N N 3.744  -5.783 -4.064 5.207  -0.136 0.352  OP1    0DC 3  
0DC OP2    O2P    O 0 1 N N N 5.173  -5.045 -6.065 3.918  1.871  1.176  OP2    0DC 4  
0DC "O5'"  "O5'"  O 0 1 N N N 4.746  -3.500 -4.155 2.821  0.107  -0.435 "O5'"  0DC 5  
0DC "C5'"  "C5'"  C 0 1 N N N 4.259  -3.230 -2.838 2.154  -0.796 0.448  "C5'"  0DC 6  
0DC "C4'"  "C4'"  C 0 1 N N S 4.105  -1.741 -2.633 0.891  -1.333 -0.229 "C4'"  0DC 7  
0DC "O4'"  "O4'"  O 0 1 N N N 3.000  -1.506 -1.727 -0.067 -0.270 -0.421 "O4'"  0DC 8  
0DC "C3'"  "C3'"  C 0 1 N N R 3.779  -0.945 -3.895 0.177  -2.348 0.691  "C3'"  0DC 9  
0DC "O3'"  "O3'"  O 0 1 N N N 4.339  0.371  -3.816 0.510  -3.685 0.315  "O3'"  0DC 10 
0DC "C2'"  "C2'"  C 0 1 N N N 2.264  -0.883 -3.879 -1.326 -2.077 0.453  "C2'"  0DC 11 
0DC "C1'"  "C1'"  C 0 1 N N S 1.953  -0.813 -2.393 -1.341 -0.931 -0.583 "C1'"  0DC 12 
0DC N1     N1     N 0 1 N N N 0.677  -1.440 -2.010 -2.438 -0.001 -0.298 N1     0DC 13 
0DC C2     C2     C 0 1 N N N -0.484 -0.661 -2.001 -3.712 -0.429 -0.363 C2     0DC 14 
0DC O2     O2     O 0 1 N N N -0.407 0.536  -2.314 -3.940 -1.590 -0.660 O2     0DC 15 
0DC N3     N3     N 0 1 N N N -1.659 -1.232 -1.653 -4.727 0.394  -0.110 N3     0DC 16 
0DC C4     C4     C 0 1 N N N -1.700 -2.525 -1.323 -4.507 1.661  0.214  C4     0DC 17 
0DC N4     N4     N 0 1 N N N -2.880 -3.047 -0.989 -5.564 2.503  0.475  N4     0DC 18 
0DC C5     C5     C 0 1 N N N -0.533 -3.341 -1.323 -3.184 2.141  0.291  C5     0DC 19 
0DC C6     C6     C 0 1 N N N 0.623  -2.763 -1.669 -2.161 1.291  0.036  C6     0DC 20 
0DC HOP3   HOP3   H 0 0 N N N 2.097  -4.574 -5.388 5.547  2.172  -1.159 HOP3   0DC 21 
0DC HOP2   HOP2   H 0 0 N N N 5.421  -5.960 -5.997 3.260  2.554  0.984  HOP2   0DC 22 
0DC "H5'"  "H5'1" H 0 1 N N N 3.281  -3.717 -2.707 2.818  -1.627 0.689  "H5'"  0DC 23 
0DC "H5''" "H5'2" H 0 0 N N N 4.973  -3.625 -2.100 1.880  -0.273 1.364  "H5''" 0DC 24 
0DC "H4'"  "H4'"  H 0 1 N N N 5.082  -1.404 -2.257 1.141  -1.795 -1.184 "H4'"  0DC 25 
0DC "H3'"  "H3'"  H 0 1 N N N 4.185  -1.396 -4.813 0.439  -2.168 1.733  "H3'"  0DC 26 
0DC "HO3'" H3T    H 0 0 N Y N 4.128  0.853  -4.607 0.088  -4.364 0.860  "HO3'" 0DC 27 
0DC "H2'"  "H2'1" H 0 1 N N N 1.884  -0.003 -4.419 -1.814 -2.963 0.049  "H2'"  0DC 28 
0DC "H2''" "H2'2" H 0 0 N N N 1.813  -1.768 -4.351 -1.808 -1.762 1.378  "H2''" 0DC 29 
0DC "H1'"  "H1'"  H 0 1 N N N 1.870  0.249  -2.117 -1.435 -1.332 -1.592 "H1'"  0DC 30 
0DC H41    H41    H 0 1 N N N -3.699 -2.473 -0.991 -6.473 2.169  0.422  H41    0DC 31 
0DC H42    H42    H 0 1 N N N -2.946 -4.012 -0.736 -5.400 3.429  0.712  H42    0DC 32 
0DC H5     H5     H 0 1 N N N -0.579 -4.386 -1.054 -2.988 3.171  0.553  H5     0DC 33 
0DC H6     H6     H 0 1 N N N 1.529  -3.351 -1.679 -1.139 1.633  0.093  H6     0DC 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0DC OP3   P      SING N N 1  
0DC OP3   HOP3   SING N N 2  
0DC P     OP1    DOUB N N 3  
0DC P     OP2    SING N N 4  
0DC P     "O5'"  SING N N 5  
0DC OP2   HOP2   SING N N 6  
0DC "O5'" "C5'"  SING N N 7  
0DC "C5'" "C4'"  SING N N 8  
0DC "C5'" "H5'"  SING N N 9  
0DC "C5'" "H5''" SING N N 10 
0DC "C4'" "O4'"  SING N N 11 
0DC "C4'" "C3'"  SING N N 12 
0DC "C4'" "H4'"  SING N N 13 
0DC "O4'" "C1'"  SING N N 14 
0DC "C3'" "O3'"  SING N N 15 
0DC "C3'" "C2'"  SING N N 16 
0DC "C3'" "H3'"  SING N N 17 
0DC "O3'" "HO3'" SING N N 18 
0DC "C2'" "C1'"  SING N N 19 
0DC "C2'" "H2'"  SING N N 20 
0DC "C2'" "H2''" SING N N 21 
0DC "C1'" N1     SING N N 22 
0DC "C1'" "H1'"  SING N N 23 
0DC N1    C2     SING N N 24 
0DC N1    C6     SING N N 25 
0DC C2    O2     DOUB N N 26 
0DC C2    N3     SING N N 27 
0DC N3    C4     DOUB N N 28 
0DC C4    N4     SING N N 29 
0DC C4    C5     SING N N 30 
0DC N4    H41    SING N N 31 
0DC N4    H42    SING N N 32 
0DC C5    C6     DOUB N N 33 
0DC C5    H5     SING N N 34 
0DC C6    H6     SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0DC SMILES           ACDLabs              11.02 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CC2O"                                                                                                      
0DC SMILES_CANONICAL CACTVS               3.352 "NC1=NC(=O)N(C=C1)[C@@H]2C[C@@H](O)[C@H](CO[P](O)(O)=O)O2"                                                                                    
0DC SMILES           CACTVS               3.352 "NC1=NC(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                         
0DC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@H]([C@@H](O[C@@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O"                                                                                        
0DC SMILES           "OpenEye OEToolkits" 1.7.0 "C1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)O)O"                                                                                                      
0DC InChI            InChI                1.03  "InChI=1S/C9H14N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-2,5-6,8,13H,3-4H2,(H2,10,11,14)(H2,15,16,17)/t5-,6+,8+/m1/s1" 
0DC InChIKey         InChI                1.03  NCMVOABPESMRCP-CHKWXVPMSA-N                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0DC "SYSTEMATIC NAME" ACDLabs              11.02 "4-amino-1-(2-deoxy-5-O-phosphono-beta-L-erythro-pentofuranosyl)pyrimidin-2(1H)-one"              
0DC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2S,3R,5S)-5-(4-azanyl-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0DC "Create component"  2009-07-16 RCSB 
0DC "Modify descriptor" 2011-06-04 RCSB 
# 
