data_05C
#

_chem_comp.id                                   05C
_chem_comp.name                                 "7-(8-methylnaphthalen-1-yl)-4-[(2~{R})-2-methylpiperazin-1-yl]-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C29 H38 N6 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-06-01
_chem_comp.pdbx_modified_date                   2021-12-24
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       486.652
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    05C
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7EW9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
05C  C10  C1   C  0  1  Y  N  N  -4.276  -14.661  13.124   3.727  -0.720  -0.816  C10  05C   1  
05C  C13  C2   C  0  1  N  N  N  -2.310  -14.276   9.767   1.294   2.030  -0.772  C13  05C   2  
05C  C15  C3   C  0  1  Y  N  N  -1.660  -12.468  11.391   0.114  -0.162  -0.397  C15  05C   3  
05C  C20  C4   C  0  1  N  N  N   1.406   -9.018  10.373  -3.113  -2.335   0.426  C20  05C   4  
05C  C21  C5   C  0  1  N  N  S   1.791   -7.586  10.935  -4.466  -2.971   0.754  C21  05C   5  
05C  C22  C6   C  0  1  N  N  N   2.544   -7.703  12.049  -4.303  -4.496   0.919  C22  05C   6  
05C  C24  C7   C  0  1  N  N  N   0.601   -6.701  12.852  -5.813  -4.064  -0.900  C24  05C   7  
05C  C26  C8   C  0  1  N  N  N   0.603   -5.851  10.879  -6.577  -1.981   0.088  C26  05C   8  
05C  C28  C9   C  0  1  Y  N  N  -0.505  -12.406   9.323  -1.150   1.855  -0.243  C28  05C   9  
05C  C01  C10  C  0  1  N  N  N  -1.449  -15.855  13.841   3.296   0.345   1.841  C01  05C  10  
05C  C02  C11  C  0  1  Y  N  N  -2.660  -15.996  14.658   4.559  -0.388   1.468  C02  05C  11  
05C  C03  C12  C  0  1  Y  N  N  -2.501  -16.730  15.820   5.544  -0.569   2.392  C03  05C  12  
05C  C04  C13  C  0  1  Y  N  N  -3.561  -16.945  16.681   6.718  -1.244   2.065  C04  05C  13  
05C  C05  C14  C  0  1  Y  N  N  -4.818  -16.414  16.382   6.914  -1.742   0.813  C05  05C  14  
05C  C06  C15  C  0  1  Y  N  N  -5.000  -15.675  15.199   5.920  -1.575  -0.166  C06  05C  15  
05C  C07  C16  C  0  1  Y  N  N  -6.333  -15.146  14.934   6.088  -2.076  -1.468  C07  05C  16  
05C  C08  C17  C  0  1  Y  N  N  -6.616  -14.384  13.768   5.108  -1.900  -2.397  C08  05C  17  
05C  C09  C18  C  0  1  Y  N  N  -5.592  -14.139  12.887   3.932  -1.227  -2.081  C09  05C  18  
05C  C12  C19  C  0  1  N  N  N  -3.602  -14.410  10.703   2.381   1.138  -1.374  C12  05C  19  
05C  C14  C20  C  0  1  Y  N  N  -1.470  -13.014  10.204   0.071   1.210  -0.466  C14  05C  20  
05C  C16  C21  C  0  1  N  N  N  -2.644  -12.987  12.408   1.387  -0.930  -0.631  C16  05C  21  
05C  C18  C22  C  0  1  Y  N  N  -0.081  -10.837  10.969  -2.142  -0.195   0.090  C18  05C  22  
05C  C23  C23  C  0  1  N  N  N   1.657   -7.342  13.268  -5.594  -5.058   0.267  C23  05C  23  
05C  C30  C24  C  0  1  N  N  N   0.567  -12.107   6.975  -2.316   3.655  -1.211  C30  05C  24  
05C  C31  C25  C  0  1  N  N  N   0.391  -12.614   5.523  -2.327   5.182  -1.314  C31  05C  25  
05C  C33  C26  C  0  1  N  N  N   0.302  -14.936   6.351  -1.433   5.340   0.929  C33  05C  26  
05C  C34  C27  C  0  1  N  N  R   0.189  -14.396   7.813  -1.421   3.813   1.033  C34  05C  27  
05C  C35  C28  C  0  1  N  N  N   1.533  -14.584   8.532  -2.751   3.332   1.617  C35  05C  28  
05C  C36  C29  C  0  1  Y  N  N  -3.964  -15.445  14.328   4.726  -0.888   0.168  C36  05C  29  
05C  N11  N1   N  0  1  N  N  N  -3.260  -14.269  12.091   2.548  -0.043  -0.512  N11  05C  30  
05C  N17  N2   N  0  1  Y  N  N  -0.968  -11.372  11.790  -1.002  -0.830  -0.118  N17  05C  31  
05C  N25  N3   N  0  1  N  N  N   0.580   -6.805  11.316  -5.408  -2.750  -0.358  N25  05C  32  
05C  N27  N4   N  0  1  Y  N  N   0.145  -11.337   9.760  -2.225   1.123   0.030  N27  05C  33  
05C  N29  N5   N  0  1  N  N  N  -0.234  -12.955   7.955  -1.237   3.236  -0.306  N29  05C  34  
05C  N32  N6   N  0  1  N  N  N   0.664  -13.999   5.310  -2.512   5.760   0.024  N32  05C  35  
05C  O19  O1   O  0  1  N  N  N   0.638   -9.669  11.402  -3.255  -0.914   0.372  O19  05C  36  
05C  H1   H1   H  0  1  N  N  N  -2.627  -14.161   8.720   1.665   2.484   0.147  H1   05C  37  
05C  H2   H2   H  0  1  N  N  N  -1.691  -15.180   9.865   1.035   2.815  -1.483  H2   05C  38  
05C  H3   H3   H  0  1  N  N  N   0.805   -8.918   9.457  -2.390  -2.599   1.197  H3   05C  39  
05C  H4   H4   H  0  1  N  N  N   2.315   -9.597  10.154  -2.765  -2.702  -0.540  H4   05C  40  
05C  H5   H5   H  0  1  N  N  N   2.333   -7.047  10.144  -4.866  -2.537   1.671  H5   05C  41  
05C  H6   H6   H  0  1  N  N  N   2.909   -8.736  12.146  -3.418  -4.849   0.388  H6   05C  42  
05C  H7   H7   H  0  1  N  N  N   3.401   -7.015  11.994  -4.254  -4.767   1.974  H7   05C  43  
05C  H8   H8   H  0  1  N  N  N   0.656   -5.646  13.157  -5.186  -4.333  -1.751  H8   05C  44  
05C  H9   H9   H  0  1  N  N  N  -0.307   -7.158  13.273  -6.862  -4.048  -1.194  H9   05C  45  
05C  H10  H10  H  0  1  N  N  N  -0.298   -5.291  11.172  -6.252  -1.013   0.468  H10  05C  46  
05C  H11  H11  H  0  1  N  N  N   1.498   -5.312  11.223  -7.256  -1.832  -0.752  H11  05C  47  
05C  H12  H12  H  0  1  N  N  N   0.633   -5.950   9.784  -7.092  -2.528   0.878  H12  05C  48  
05C  H13  H13  H  0  1  N  N  N  -0.902  -14.951  14.148   3.373   1.385   1.525  H13  05C  49  
05C  H14  H14  H  0  1  N  N  N  -0.807  -16.737  13.982   2.445  -0.124   1.347  H14  05C  50  
05C  H15  H15  H  0  1  N  N  N  -1.730  -15.772  12.781   3.158   0.303   2.921  H15  05C  51  
05C  H16  H16  H  0  1  N  N  N  -1.532  -17.142  16.059   5.412  -0.183   3.392  H16  05C  52  
05C  H17  H17  H  0  1  N  N  N  -3.418  -17.522  17.583   7.484  -1.373   2.815  H17  05C  53  
05C  H18  H18  H  0  1  N  N  N  -5.647  -16.570  17.056   7.829  -2.263   0.573  H18  05C  54  
05C  H19  H19  H  0  1  N  N  N  -7.126  -15.338  15.642   6.994  -2.601  -1.732  H19  05C  55  
05C  H20  H20  H  0  1  N  N  N  -7.611  -14.008  13.580   5.247  -2.289  -3.395  H20  05C  56  
05C  H21  H21  H  0  1  N  N  N  -5.779  -13.546  12.004   3.170  -1.101  -2.836  H21  05C  57  
05C  H22  H22  H  0  1  N  N  N  -4.324  -13.626  10.431   2.084   0.823  -2.374  H22  05C  58  
05C  H23  H23  H  0  1  N  N  N  -4.057  -15.399  10.545   3.320   1.690  -1.425  H23  05C  59  
05C  H24  H24  H  0  1  N  N  N  -2.115  -13.093  13.367   1.466  -1.730   0.105  H24  05C  60  
05C  H25  H25  H  0  1  N  N  N  -3.447  -12.242  12.513   1.368  -1.363  -1.632  H25  05C  61  
05C  H26  H26  H  0  1  N  N  N   1.349   -8.263  13.785  -5.434  -6.070  -0.106  H26  05C  62  
05C  H27  H27  H  0  1  N  N  N   2.225   -6.705  13.961  -6.429  -5.029   0.967  H27  05C  63  
05C  H28  H28  H  0  1  N  N  N   1.632  -12.156   7.246  -3.273   3.310  -0.820  H28  05C  64  
05C  H29  H29  H  0  1  N  N  N   0.221  -11.065   7.036  -2.150   3.225  -2.199  H29  05C  65  
05C  H30  H30  H  0  1  N  N  N   1.068  -12.034   4.879  -1.380   5.526  -1.731  H30  05C  66  
05C  H31  H31  H  0  1  N  N  N  -0.651  -12.426   5.224  -3.145   5.497  -1.962  H31  05C  67  
05C  H32  H32  H  0  1  N  N  N  -0.676  -15.362   6.083  -1.599   5.770   1.917  H32  05C  68  
05C  H33  H33  H  0  1  N  N  N   1.061  -15.732   6.354  -0.475   5.686   0.539  H33  05C  69  
05C  H34  H34  H  0  1  N  N  N  -0.554  -15.018   8.333  -0.604   3.499   1.681  H34  05C  70  
05C  H35  H35  H  0  1  N  N  N   1.455  -14.204   9.561  -3.568   3.646   0.968  H35  05C  71  
05C  H36  H36  H  0  1  N  N  N   1.790  -15.653   8.554  -2.743   2.244   1.690  H36  05C  72  
05C  H37  H37  H  0  1  N  N  N   2.317  -14.029   7.995  -2.889   3.761   2.609  H37  05C  73  
05C  H39  H39  H  0  1  N  N  N   0.176  -14.273   4.482  -2.575   6.766  -0.021  H39  05C  74  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
05C  N32  C31  SING  N  N   1  
05C  N32  C33  SING  N  N   2  
05C  C31  C30  SING  N  N   3  
05C  C33  C34  SING  N  N   4  
05C  C30  N29  SING  N  N   5  
05C  C34  N29  SING  N  N   6  
05C  C34  C35  SING  N  N   7  
05C  N29  C28  SING  N  N   8  
05C  C28  N27  DOUB  Y  N   9  
05C  C28  C14  SING  Y  N  10  
05C  N27  C18  SING  Y  N  11  
05C  C13  C14  SING  N  N  12  
05C  C13  C12  SING  N  N  13  
05C  C14  C15  DOUB  Y  N  14  
05C  C20  C21  SING  N  N  15  
05C  C20  O19  SING  N  N  16  
05C  C12  N11  SING  N  N  17  
05C  C26  N25  SING  N  N  18  
05C  C21  N25  SING  N  N  19  
05C  C21  C22  SING  N  N  20  
05C  C18  O19  SING  N  N  21  
05C  C18  N17  DOUB  Y  N  22  
05C  N25  C24  SING  N  N  23  
05C  C15  N17  SING  Y  N  24  
05C  C15  C16  SING  N  N  25  
05C  C22  C23  SING  N  N  26  
05C  N11  C16  SING  N  N  27  
05C  N11  C10  SING  N  N  28  
05C  C24  C23  SING  N  N  29  
05C  C09  C10  DOUB  Y  N  30  
05C  C09  C08  SING  Y  N  31  
05C  C10  C36  SING  Y  N  32  
05C  C08  C07  DOUB  Y  N  33  
05C  C01  C02  SING  N  N  34  
05C  C36  C02  DOUB  Y  N  35  
05C  C36  C06  SING  Y  N  36  
05C  C02  C03  SING  Y  N  37  
05C  C07  C06  SING  Y  N  38  
05C  C06  C05  DOUB  Y  N  39  
05C  C03  C04  DOUB  Y  N  40  
05C  C05  C04  SING  Y  N  41  
05C  C13  H1   SING  N  N  42  
05C  C13  H2   SING  N  N  43  
05C  C20  H3   SING  N  N  44  
05C  C20  H4   SING  N  N  45  
05C  C21  H5   SING  N  N  46  
05C  C22  H6   SING  N  N  47  
05C  C22  H7   SING  N  N  48  
05C  C24  H8   SING  N  N  49  
05C  C24  H9   SING  N  N  50  
05C  C26  H10  SING  N  N  51  
05C  C26  H11  SING  N  N  52  
05C  C26  H12  SING  N  N  53  
05C  C01  H13  SING  N  N  54  
05C  C01  H14  SING  N  N  55  
05C  C01  H15  SING  N  N  56  
05C  C03  H16  SING  N  N  57  
05C  C04  H17  SING  N  N  58  
05C  C05  H18  SING  N  N  59  
05C  C07  H19  SING  N  N  60  
05C  C08  H20  SING  N  N  61  
05C  C09  H21  SING  N  N  62  
05C  C12  H22  SING  N  N  63  
05C  C12  H23  SING  N  N  64  
05C  C16  H24  SING  N  N  65  
05C  C16  H25  SING  N  N  66  
05C  C23  H26  SING  N  N  67  
05C  C23  H27  SING  N  N  68  
05C  C30  H28  SING  N  N  69  
05C  C30  H29  SING  N  N  70  
05C  C31  H30  SING  N  N  71  
05C  C31  H31  SING  N  N  72  
05C  C33  H32  SING  N  N  73  
05C  C33  H33  SING  N  N  74  
05C  C34  H34  SING  N  N  75  
05C  C35  H35  SING  N  N  76  
05C  C35  H36  SING  N  N  77  
05C  C35  H37  SING  N  N  78  
05C  N32  H39  SING  N  N  79  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
05C  InChI             InChI                 1.03   "InChI=1S/C29H38N6O/c1-20-7-4-8-22-9-5-11-26(27(20)22)34-15-12-24-25(18-34)31-29(36-19-23-10-6-14-33(23)3)32-28(24)35-16-13-30-17-21(35)2/h4-5,7-9,11,21,23,30H,6,10,12-19H2,1-3H3/t21-,23+/m1/s1"  
05C  InChIKey          InChI                 1.03   UAZYYGRPOMNMMP-GGAORHGYSA-N  
05C  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H]1CNCCN1c2nc(OC[C@@H]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(C)c56"  
05C  SMILES            CACTVS                3.385  "C[CH]1CNCCN1c2nc(OC[CH]3CCCN3C)nc4CN(CCc24)c5cccc6cccc(C)c56"  
05C  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5CCNC[C@H]5C)OC[C@@H]6CCCN6C)C3"  
05C  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1cccc2c1c(ccc2)N3CCc4c(nc(nc4N5CCNCC5C)OCC6CCCN6C)C3"  
#
_pdbx_chem_comp_identifier.comp_id          05C
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "7-(8-methylnaphthalen-1-yl)-4-[(2~{R})-2-methylpiperazin-1-yl]-2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
05C  "Create component"  2021-06-01  PDBJ  
05C  "Initial release"   2021-12-29  RCSB  
##
