data_XYB
#

_chem_comp.id                                   XYB
_chem_comp.name                                 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose
_chem_comp.type                                 SACCHARIDE
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H18 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        xylobiose
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-05-29
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       282.245
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XYB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3VSU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XYB  "O4'"  "O4'"  O  0  1  N  N  N  20.914  -6.211  63.766  -0.022   0.443  -0.693  "O4'"  XYB   1  
XYB  C1     C1     C  0  1  N  N  S  22.275  -6.654  63.898  -1.220   0.263   0.064  C1     XYB   2  
XYB  C2     C2     C  0  1  N  N  R  22.755  -7.354  62.629  -2.418   0.762  -0.749  C2     XYB   3  
XYB  C3     C3     C  0  1  N  N  S  24.098  -6.853  62.098  -3.704   0.511   0.044  C3     XYB   4  
XYB  C4     C4     C  0  1  N  N  R  24.241  -5.337  62.135  -3.805  -0.982   0.372  C4     XYB   5  
XYB  C5     C5     C  0  1  N  N  N  23.065  -4.733  62.878  -2.554  -1.413   1.142  C5     XYB   6  
XYB  O2     O2     O  0  1  N  N  N  22.805  -8.776  62.846  -2.276   2.162  -0.999  O2     XYB   7  
XYB  O3     O3     O  0  1  N  N  N  24.237  -7.267  60.730  -4.832   0.905  -0.739  O3     XYB   8  
XYB  O4     O4     O  0  1  N  N  N  25.434  -4.990  62.855  -4.964  -1.217   1.174  O4     XYB   9  
XYB  O5     O5     O  0  1  N  N  N  23.008  -5.442  64.120  -1.392  -1.124   0.361  O5     XYB  10  
XYB  "C4'"  "C4'"  C  0  1  N  N  R  19.907  -7.158  64.147   1.171   0.112   0.020  "C4'"  XYB  11  
XYB  "C5'"  "C5'"  C  0  1  N  N  N  19.087  -7.509  62.913   1.698   1.355   0.742  "C5'"  XYB  12  
XYB  "O5'"  "O5'"  O  0  1  N  N  N  18.416  -6.334  62.426   2.922   1.036   1.406  "O5'"  XYB  13  
XYB  "C1'"  "C1'"  C  0  1  N  N  R  17.415  -5.868  63.347   3.968   0.609   0.531  "C1'"  XYB  14  
XYB  "O1'"  "O1'"  O  0  1  N  Y  N  16.107  -6.073  62.787   5.147   0.343   1.292  "O1'"  XYB  15  
XYB  "C2'"  "C2'"  C  0  1  N  N  R  17.546  -6.585  64.685   3.532  -0.664  -0.200  "C2'"  XYB  16  
XYB  "O2'"  "O2'"  O  0  1  N  N  N  16.698  -5.976  65.670   4.553  -1.060  -1.119  "O2'"  XYB  17  
XYB  "C3'"  "C3'"  C  0  1  N  N  R  18.986  -6.496  65.161   2.234  -0.386  -0.964  "C3'"  XYB  18  
XYB  "O3'"  "O3'"  O  0  1  N  N  N  19.088  -7.159  66.428   1.781  -1.589  -1.590  "O3'"  XYB  19  
XYB  H1     H1     H  0  1  N  N  N  22.381  -7.336  64.755  -1.151   0.829   0.993  H1     XYB  20  
XYB  H2     H2     H  0  1  N  N  N  22.006  -7.154  61.848  -2.463   0.226  -1.697  H2     XYB  21  
XYB  H3     H3     H  0  1  N  N  N  24.901  -7.296  62.705  -3.680   1.087   0.969  H3     XYB  22  
XYB  H4     H4     H  0  1  N  N  N  24.274  -4.943  61.108  -3.880  -1.554  -0.553  H4     XYB  23  
XYB  H5     H5     H  0  1  N  N  N  23.228  -3.659  63.053  -2.503  -0.870   2.085  H5     XYB  24  
XYB  H6     H6     H  0  1  N  N  N  22.134  -4.874  62.309  -2.601  -2.484   1.341  H6     XYB  25  
XYB  H7     H7     H  0  1  N  N  N  21.966  -9.076  63.176  -1.479   2.394  -1.494  H7     XYB  26  
XYB  H8     H8     H  0  1  N  N  N  24.152  -8.212  60.674  -5.683   0.767  -0.300  H8     XYB  27  
XYB  H9     H9     H  0  1  N  N  N  25.526  -4.045  62.880  -5.091  -2.144   1.420  H9     XYB  28  
XYB  H10    H10    H  0  1  N  N  N  20.352  -8.067  64.577   0.955  -0.670   0.748  H10    XYB  29  
XYB  H11    H11    H  0  1  N  N  N  18.341  -8.274  63.175   1.875   2.149   0.016  H11    XYB  30  
XYB  H12    H12    H  0  1  N  N  N  19.754  -7.900  62.130   0.963   1.689   1.474  H12    XYB  31  
XYB  H13    H13    H  0  1  N  N  N  17.564  -4.793  63.524   4.174   1.394  -0.198  H13    XYB  32  
XYB  H14    H14    H  0  1  N  N  N  15.448  -5.764  63.398   5.480   1.107   1.782  H14    XYB  33  
XYB  H15    H15    H  0  1  N  N  N  17.276  -7.643  64.552   3.365  -1.460   0.525  H15    XYB  34  
XYB  H16    H16    H  0  1  N  N  N  16.792  -6.435  66.497   5.405  -1.247  -0.703  H16    XYB  35  
XYB  H17    H17    H  0  1  N  N  N  19.266  -5.437  65.262   2.414   0.376  -1.723  H17    XYB  36  
XYB  H18    H18    H  0  1  N  N  N  18.510  -6.738  67.053   2.407  -1.960  -2.227  H18    XYB  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XYB  O3     C3     SING  N  N   1  
XYB  C3     C4     SING  N  N   2  
XYB  C3     C2     SING  N  N   3  
XYB  C4     O4     SING  N  N   4  
XYB  C4     C5     SING  N  N   5  
XYB  "O5'"  "C5'"  SING  N  N   6  
XYB  "O5'"  "C1'"  SING  N  N   7  
XYB  C2     O2     SING  N  N   8  
XYB  C2     C1     SING  N  N   9  
XYB  "O1'"  "C1'"  SING  N  N  10  
XYB  C5     O5     SING  N  N  11  
XYB  "C5'"  "C4'"  SING  N  N  12  
XYB  "C1'"  "C2'"  SING  N  N  13  
XYB  "O4'"  C1     SING  N  N  14  
XYB  "O4'"  "C4'"  SING  N  N  15  
XYB  C1     O5     SING  N  N  16  
XYB  "C4'"  "C3'"  SING  N  N  17  
XYB  "C2'"  "C3'"  SING  N  N  18  
XYB  "C2'"  "O2'"  SING  N  N  19  
XYB  "C3'"  "O3'"  SING  N  N  20  
XYB  C1     H1     SING  N  N  21  
XYB  C2     H2     SING  N  N  22  
XYB  C3     H3     SING  N  N  23  
XYB  C4     H4     SING  N  N  24  
XYB  C5     H5     SING  N  N  25  
XYB  C5     H6     SING  N  N  26  
XYB  O2     H7     SING  N  N  27  
XYB  O3     H8     SING  N  N  28  
XYB  O4     H9     SING  N  N  29  
XYB  "C4'"  H10    SING  N  N  30  
XYB  "C5'"  H11    SING  N  N  31  
XYB  "C5'"  H12    SING  N  N  32  
XYB  "C1'"  H13    SING  N  N  33  
XYB  "O1'"  H14    SING  N  N  34  
XYB  "C2'"  H15    SING  N  N  35  
XYB  "O2'"  H16    SING  N  N  36  
XYB  "C3'"  H17    SING  N  N  37  
XYB  "O3'"  H18    SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XYB  SMILES            ACDLabs               12.01  "O(C1COC(O)C(O)C1O)C2OCC(O)C(O)C2O"  
XYB  InChI             InChI                 1.03   "InChI=1S/C10H18O9/c11-3-1-18-10(8(15)5(3)12)19-4-2-17-9(16)7(14)6(4)13/h3-16H,1-2H2/t3-,4-,5+,6+,7-,8-,9-,10+/m1/s1"  
XYB  InChIKey          InChI                 1.03   LGQKSQQRKHFMLI-SJYYZXOBSA-N  
XYB  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H]1CO[C@@H](O[C@@H]2CO[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O"  
XYB  SMILES            CACTVS                3.370  "O[CH]1CO[CH](O[CH]2CO[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O"  
XYB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@@H]2CO[C@H]([C@@H]([C@H]2O)O)O)O)O)O"  
XYB  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(C(C(O1)OC2COC(C(C2O)O)O)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XYB  "SYSTEMATIC NAME"  ACDLabs               12.01  4-O-beta-D-xylopyranosyl-beta-D-xylopyranose  
XYB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2S,3R,4S,5R)-2-[(3R,4R,5R,6R)-4,5,6-tris(oxidanyl)oxan-3-yl]oxyoxane-3,4,5-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XYB  "Create component"          2012-05-29  PDBJ  
XYB  "Modify leaving atom flag"  2012-06-18  PDBJ  
XYB  "Initial release"           2016-08-31  RCSB  
XYB  "Modify synonyms"           2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XYB
_pdbx_chem_comp_synonyms.name        xylobiose
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
