data_XUB
# 
_chem_comp.id                                    XUB 
_chem_comp.name                                  "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl](4'-chloro[1,1'-biphenyl]-4-yl)methanone" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H22 Cl N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-08 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        471.938 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XUB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G5D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XUB C02  C1  C  0 1 N N N N N N -12.716 12.653 50.374 3.868  -2.933 0.131  C02  XUB 1  
XUB C04  C2  C  0 1 N N R N N N -11.823 11.021 49.216 1.982  -1.626 0.550  C04  XUB 2  
XUB C05  C3  C  0 1 N N R N N N -13.040 11.275 49.920 2.434  -2.848 -0.346 C05  XUB 3  
XUB C06  C4  C  0 1 N N N N N N -14.083 11.047 48.882 1.344  -3.816 0.063  C06  XUB 4  
XUB C11  C5  C  0 1 N N N N N N -10.695 13.281 51.805 5.564  -1.054 -0.038 C11  XUB 5  
XUB C15  C6  C  0 1 Y N N N N N -8.049  11.246 53.576 7.349  2.159  0.686  C15  XUB 6  
XUB C16  C7  C  0 1 Y N N N N N -8.347  13.869 52.501 4.910  1.314  -0.382 C16  XUB 7  
XUB C17  C8  C  0 1 Y N N N N N -7.122  13.468 53.141 5.192  2.680  -0.296 C17  XUB 8  
XUB C18  C9  C  0 1 Y N N N N N -6.978  12.187 53.655 6.422  3.099  0.243  C18  XUB 9  
XUB C22  C10 C  0 1 N N N N N N -14.176 9.288  47.071 -1.143 -3.400 -0.217 C22  XUB 10 
XUB C23  C11 C  0 1 Y N N N N N -13.508 8.130  46.303 -2.272 -2.450 -0.164 C23  XUB 11 
XUB C25  C12 C  0 1 Y N N N N N -13.375 6.878  46.959 -2.090 -1.125 -0.568 C25  XUB 12 
XUB C26  C13 C  0 1 Y N N N N N -12.803 5.830  46.272 -3.144 -0.240 -0.520 C26  XUB 13 
XUB C27  C14 C  0 1 Y N N N N N -12.387 6.034  44.927 -4.393 -0.666 -0.066 C27  XUB 14 
XUB C28  C15 C  0 1 Y N N N N N -12.545 7.280  44.267 -4.576 -1.989 0.337  C28  XUB 15 
XUB N01  N1  N  0 1 N N N N N N -11.409 12.368 50.925 4.301  -1.500 0.105  N01  XUB 16 
XUB C03  C16 C  0 1 N N N N N N -10.913 11.079 50.423 3.081  -0.653 0.265  C03  XUB 17 
XUB N07  N2  N  0 1 N N N N N N -13.511 9.970  48.123 0.115  -2.964 -0.007 N07  XUB 18 
XUB C08  C17 C  0 1 N N N N N N -12.124 9.685  48.576 0.533  -1.545 0.197  C08  XUB 19 
XUB C12  C18 C  0 1 Y N N N N N -9.370  12.930 52.409 5.852  0.392  0.055  C12  XUB 20 
XUB O13  O1  O  0 1 N N N N N N -11.252 14.313 52.130 6.468  -1.842 -0.244 O13  XUB 21 
XUB C14  C19 C  0 1 Y N N N N N -9.238  11.618 52.959 7.071  0.827  0.595  C14  XUB 22 
XUB N19  N3  N  0 1 Y N N N N N -5.725  12.078 54.243 6.411  4.471  0.197  N19  XUB 23 
XUB N20  N4  N  0 1 Y N N N N N -5.095  13.287 54.044 5.181  4.845  -0.364 N20  XUB 24 
XUB N21  N5  N  0 1 Y N N N N N -5.948  14.148 53.379 4.497  3.791  -0.640 N21  XUB 25 
XUB O24  O2  O  0 1 N N N N N N -15.320 9.583  46.760 -1.348 -4.576 -0.449 O24  XUB 26 
XUB C29  C20 C  0 1 Y N N N N N -13.110 8.323  44.956 -3.525 -2.877 0.284  C29  XUB 27 
XUB C30  C21 C  0 1 Y N N N N N -11.849 4.957  44.236 -5.526 0.288  -0.013 C30  XUB 28 
XUB C31  C22 C  0 1 Y N N N N N -12.245 3.666  44.593 -6.775 -0.134 0.439  C31  XUB 29 
XUB C32  C23 C  0 1 Y N N N N N -11.718 2.570  43.918 -7.827 0.758  0.486  C32  XUB 30 
XUB C33  C24 C  0 1 Y N N N N N -10.801 2.800  42.830 -7.643 2.070  0.086  C33  XUB 31 
XUB C34  C25 C  0 1 Y N N N N N -10.421 4.088  42.461 -6.405 2.495  -0.365 C34  XUB 32 
XUB C35  C26 C  0 1 Y N N N N N -10.956 5.181  43.156 -5.345 1.612  -0.410 C35  XUB 33 
XUB CL36 CL1 CL 0 0 N N N N N N -10.183 1.462  41.960 -8.971 3.187  0.148  CL36 XUB 34 
XUB H37  H1  H  0 1 N N N N N N -13.420 13.020 51.135 3.917  -3.334 1.143  H37  XUB 35 
XUB H38  H2  H  0 1 N N N N N N -12.672 13.369 49.540 4.468  -3.535 -0.552 H38  XUB 36 
XUB H10  H3  H  0 1 N N N N N N -11.576 11.792 48.472 2.069  -1.933 1.593  H10  XUB 37 
XUB H09  H4  H  0 1 N N N N N N -13.174 10.595 50.774 2.385  -2.612 -1.409 H09  XUB 38 
XUB H41  H5  H  0 1 N N N N N N -15.041 10.753 49.335 1.281  -4.647 -0.639 H41  XUB 39 
XUB H42  H6  H  0 1 N N N N N N -14.231 11.942 48.259 1.508  -4.177 1.079  H42  XUB 40 
XUB H46  H7  H  0 1 N N N N N N -7.937  10.255 53.991 8.293  2.485  1.098  H46  XUB 41 
XUB H47  H8  H  0 1 N N N N N N -8.468  14.866 52.105 3.970  0.978  -0.794 H47  XUB 42 
XUB H49  H9  H  0 1 N N N N N N -13.715 6.750  47.976 -1.123 -0.795 -0.919 H49  XUB 43 
XUB H50  H10 H  0 1 N N N N N N -12.672 4.869  46.747 -3.003 0.784  -0.832 H50  XUB 44 
XUB H51  H11 H  0 1 N N N N N N -12.227 7.405  43.243 -5.543 -2.317 0.688  H51  XUB 45 
XUB H40  H12 H  0 1 N N N N N N -9.848  11.110 50.151 2.874  -0.106 -0.655 H40  XUB 46 
XUB H39  H13 H  0 1 N N N N N N -11.088 10.253 51.128 3.204  0.037  1.100  H39  XUB 47 
XUB H44  H14 H  0 1 N N N N N N -11.449 9.466  47.735 -0.033 -1.096 1.013  H44  XUB 48 
XUB H43  H15 H  0 1 N N N N N N -12.086 8.859  49.302 0.396  -0.973 -0.721 H43  XUB 49 
XUB H45  H16 H  0 1 N N N N N N -10.058 10.918 52.896 7.794  0.104  0.940  H45  XUB 50 
XUB H48  H17 H  0 1 N N N N N N -5.353  11.280 54.717 7.116  5.066  0.496  H48  XUB 51 
XUB H52  H18 H  0 1 N N N N N N -13.250 9.281  44.477 -3.668 -3.902 0.592  H52  XUB 52 
XUB H53  H19 H  0 1 N N N N N N -12.958 3.519  45.391 -6.920 -1.158 0.751  H53  XUB 53 
XUB H54  H20 H  0 1 N N N N N N -11.991 1.565  44.204 -8.795 0.431  0.836  H54  XUB 54 
XUB H55  H21 H  0 1 N N N N N N -9.724  4.242  41.651 -6.267 3.520  -0.676 H55  XUB 55 
XUB H56  H22 H  0 1 N N N N N N -10.690 6.188  42.871 -4.378 1.946  -0.757 H56  XUB 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XUB N01 C02  SING N N 1  
XUB N01 C03  SING N N 2  
XUB C03 C04  SING N N 3  
XUB C02 C05  SING N N 4  
XUB C04 C05  SING N N 5  
XUB C05 C06  SING N N 6  
XUB C06 N07  SING N N 7  
XUB C04 C08  SING N N 8  
XUB N07 C08  SING N N 9  
XUB N01 C11  SING N N 10 
XUB C11 C12  SING N N 11 
XUB C11 O13  DOUB N N 12 
XUB C12 C14  DOUB Y N 13 
XUB C14 C15  SING Y N 14 
XUB C12 C16  SING Y N 15 
XUB C16 C17  DOUB Y N 16 
XUB C15 C18  DOUB Y N 17 
XUB C17 C18  SING Y N 18 
XUB C18 N19  SING Y N 19 
XUB N19 N20  SING Y N 20 
XUB C17 N21  SING Y N 21 
XUB N20 N21  DOUB Y N 22 
XUB N07 C22  SING N N 23 
XUB C22 C23  SING N N 24 
XUB C22 O24  DOUB N N 25 
XUB C23 C25  DOUB Y N 26 
XUB C25 C26  SING Y N 27 
XUB C26 C27  DOUB Y N 28 
XUB C27 C28  SING Y N 29 
XUB C23 C29  SING Y N 30 
XUB C28 C29  DOUB Y N 31 
XUB C27 C30  SING N N 32 
XUB C30 C31  DOUB Y N 33 
XUB C31 C32  SING Y N 34 
XUB C32 C33  DOUB Y N 35 
XUB C33 C34  SING Y N 36 
XUB C30 C35  SING Y N 37 
XUB C34 C35  DOUB Y N 38 
XUB C33 CL36 SING N N 39 
XUB C02 H37  SING N N 40 
XUB C02 H38  SING N N 41 
XUB C04 H10  SING N N 42 
XUB C05 H09  SING N N 43 
XUB C06 H41  SING N N 44 
XUB C06 H42  SING N N 45 
XUB C15 H46  SING N N 46 
XUB C16 H47  SING N N 47 
XUB C25 H49  SING N N 48 
XUB C26 H50  SING N N 49 
XUB C28 H51  SING N N 50 
XUB C03 H40  SING N N 51 
XUB C03 H39  SING N N 52 
XUB C08 H44  SING N N 53 
XUB C08 H43  SING N N 54 
XUB C14 H45  SING N N 55 
XUB N19 H48  SING N N 56 
XUB C29 H52  SING N N 57 
XUB C31 H53  SING N N 58 
XUB C32 H54  SING N N 59 
XUB C34 H55  SING N N 60 
XUB C35 H56  SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XUB SMILES           ACDLabs              12.01 "Clc1ccc(cc1)c1ccc(cc1)C(=O)N1CC2CN(CC2C1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                          
XUB InChI            InChI                1.06  "InChI=1S/C26H22ClN5O2/c27-22-8-5-17(6-9-22)16-1-3-18(4-2-16)25(33)31-12-20-14-32(15-21(20)13-31)26(34)19-7-10-23-24(11-19)29-30-28-23/h1-11,20-21H,12-15H2,(H,28,29,30)" 
XUB InChIKey         InChI                1.06  JLMNCPWXRMABPO-UHFFFAOYSA-N                                                                                                                                               
XUB SMILES_CANONICAL CACTVS               3.385 "Clc1ccc(cc1)c2ccc(cc2)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                 
XUB SMILES           CACTVS               3.385 "Clc1ccc(cc1)c2ccc(cc2)C(=O)N3C[CH]4CN(C[CH]4C3)C(=O)c5ccc6[nH]nnc6c5"                                                                                                    
XUB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2ccc(cc2)Cl)C(=O)N3C[C@@H]4CN(C[C@H]4C3)C(=O)c5ccc6c(c5)nn[nH]6"                                                                                               
XUB SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1c2ccc(cc2)Cl)C(=O)N3CC4CN(CC4C3)C(=O)c5ccc6c(c5)nn[nH]6"                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XUB "SYSTEMATIC NAME" ACDLabs              12.01 "[(3aR,6aS)-5-(1H-benzotriazole-5-carbonyl)hexahydropyrrolo[3,4-c]pyrrol-2(1H)-yl](4'-chloro[1,1'-biphenyl]-4-yl)methanone"                              
XUB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{a}~{R},6~{a}~{R})-5-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,6,6~{a}-hexahydropyrrolo[3,4-c]pyrrol-2-yl]-[4-(4-chlorophenyl)phenyl]methanone" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XUB "Create component" 2023-06-08 RCSB 
XUB "Initial release"  2024-12-18 RCSB 
# 
