data_XCB
# 
_chem_comp.id                                    XCB 
_chem_comp.name                                  "7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H25 Cl N2 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-06-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.015 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XCB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P9S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XCB C15  C1  C  0 1 Y N N N N N -22.468 -12.139 12.208 -0.888  -0.795 -0.633 C15  XCB 1  
XCB C14  C2  C  0 1 Y N N N N N -22.744 -12.839 13.412 -2.174  -0.378 -0.972 C14  XCB 2  
XCB C13  C3  C  0 1 Y N N N N N -26.701 -13.922 15.908 -7.758  -0.565 1.318  C13  XCB 3  
XCB C10  C4  C  0 1 N N N N N N -30.359 -15.027 16.394 -10.354 2.151  0.964  C10  XCB 4  
XCB C01  C5  C  0 1 N N N N N N -22.354 -12.318 15.889 -3.545  -2.270 -1.803 C01  XCB 5  
XCB C02  C6  C  0 1 N N S N N N -23.222 -12.093 14.646 -3.358  -1.260 -0.669 C02  XCB 6  
XCB C04  C7  C  0 1 N N N N N N -25.595 -12.211 14.410 -5.515  -0.887 0.284  C04  XCB 7  
XCB C06  C8  C  0 1 Y N N N N N -26.819 -12.918 14.942 -6.757  -0.107 0.458  C06  XCB 8  
XCB C07  C9  C  0 1 Y N N N N N -28.085 -12.612 14.429 -6.936  1.091  -0.236 C07  XCB 9  
XCB C08  C10 C  0 1 Y N N N N N -29.221 -13.256 14.955 -8.099  1.814  -0.069 C08  XCB 10 
XCB C09  C11 C  0 1 Y N N N N N -29.110 -14.313 15.891 -9.086  1.355  0.785  C09  XCB 11 
XCB C12  C12 C  0 1 Y N N N N N -27.834 -14.592 16.355 -8.915  0.169  1.476  C12  XCB 12 
XCB C17  C13 C  0 1 Y N N N N N -22.325 -10.633 10.597 0.971   -1.860 0.078  C17  XCB 13 
XCB C18  C14 C  0 1 N N N N N N -22.568 -9.322  9.986  1.833   -2.891 0.664  C18  XCB 14 
XCB C21  C15 C  0 1 Y N N N N N -21.874 -11.805 10.031 1.404   -0.660 -0.457 C21  XCB 15 
XCB C22  C16 C  0 1 Y N N N N N -21.338 -12.004 8.655  2.801   -0.179 -0.539 C22  XCB 16 
XCB C23  C17 C  0 1 Y N N N N N -20.459 -11.040 8.141  3.729   -0.855 -1.334 C23  XCB 17 
XCB C24  C18 C  0 1 Y N N N N N -19.938 -11.178 6.893  5.030   -0.402 -1.407 C24  XCB 18 
XCB C25  C19 C  0 1 Y N N N N N -20.268 -12.224 6.067  5.417   0.719  -0.695 C25  XCB 19 
XCB C26  C20 C  0 1 N N N N N N -19.691 -12.306 4.634  6.841   1.204  -0.775 C26  XCB 20 
XCB C28  C21 C  0 1 N N N N N N -20.873 -9.798  3.741  9.468   1.121  0.241  C28  XCB 21 
XCB C31  C22 C  0 1 Y N N N N N -21.109 -13.221 6.594  4.502   1.395  0.095  C31  XCB 22 
XCB C33  C23 C  0 1 Y N N N N N -21.649 -13.107 7.918  3.195   0.955  0.172  C33  XCB 23 
XCB C34  C24 C  0 1 Y N N N N N -21.964 -12.780 11.060 0.204   0.044  -0.925 C34  XCB 24 
XCB C35  C25 C  0 1 Y N N N N N -21.691 -14.169 11.094 -0.009  1.277  -1.546 C35  XCB 25 
XCB C36  C26 C  0 1 Y N N N N N -21.963 -14.854 12.278 -1.278  1.664  -1.869 C36  XCB 26 
XCB C37  C27 C  0 1 Y N N N N N -22.490 -14.201 13.401 -2.360  0.841  -1.584 C37  XCB 27 
XCB N11  N1  N  0 1 N N N N N N -30.607 -14.732 17.772 -11.349 1.716  -0.026 N11  XCB 28 
XCB N16  N2  N  0 1 Y N N N N N -22.662 -10.831 11.890 -0.402  -1.933 -0.035 N16  XCB 29 
XCB O03  O1  O  0 1 N N N N N N -24.492 -12.617 15.041 -4.551  -0.442 -0.547 O03  XCB 30 
XCB O05  O2  O  0 1 N N N N N N -25.502 -11.407 13.516 -5.362  -1.929 0.889  O05  XCB 31 
XCB O19  O3  O  0 1 N N N N N N -22.451 -8.268  10.678 1.291   -4.026 1.150  O19  XCB 32 
XCB O20  O4  O  0 1 N N N N N N -23.016 -9.308  8.772  3.036   -2.722 0.712  O20  XCB 33 
XCB O29  O5  O  0 1 N N N N N N -20.180 -11.550 2.088  7.350   0.842  1.787  O29  XCB 34 
XCB O30  O6  O  0 1 N N N N N N -22.181 -12.083 3.487  7.888   -0.989 0.248  O30  XCB 35 
XCB S27  S1  S  0 1 N N N N N N -20.810 -11.491 3.384  7.826   0.404  0.522  S27  XCB 36 
XCB CL1  CL1 CL 0 0 N N N N N N -21.577 -14.596 5.700  4.997   2.801  0.985  CL1  XCB 37 
XCB H131 H1  H  0 0 N N N N N N -25.730 -14.177 16.307 -7.627  -1.493 1.855  H131 XCB 38 
XCB H102 H2  H  0 0 N N N N N N -31.223 -14.701 15.797 -10.745 1.990  1.968  H102 XCB 39 
XCB H101 H3  H  0 0 N N N N N N -30.222 -16.112 16.279 -10.140 3.211  0.822  H101 XCB 40 
XCB H013 H4  H  0 0 N N N N N N -22.766 -11.746 16.733 -2.649  -2.883 -1.895 H013 XCB 41 
XCB H011 H5  H  0 0 N N N N N N -22.345 -13.389 16.141 -4.402  -2.907 -1.584 H011 XCB 42 
XCB H012 H6  H  0 0 N N N N N N -21.327 -11.981 15.685 -3.719  -1.737 -2.738 H012 XCB 43 
XCB H021 H7  H  0 0 N N N N N N -23.287 -11.016 14.430 -3.184  -1.792 0.266  H021 XCB 44 
XCB H071 H8  H  0 0 N N N N N N -28.190 -11.887 13.635 -6.166  1.451  -0.902 H071 XCB 45 
XCB H081 H9  H  0 0 N N N N N N -30.202 -12.936 14.637 -8.239  2.741  -0.605 H081 XCB 46 
XCB H121 H10 H  0 0 N N N N N N -27.714 -15.366 17.099 -9.692  -0.186 2.138  H121 XCB 47 
XCB H231 H11 H  0 0 N N N N N N -20.194 -10.182 8.741  3.428   -1.730 -1.890 H231 XCB 48 
XCB H241 H12 H  0 0 N N N N N N -19.238 -10.437 6.538  5.748   -0.925 -2.021 H241 XCB 49 
XCB H261 H13 H  0 0 N N N N N N -19.565 -13.364 4.362  7.256   0.955  -1.752 H261 XCB 50 
XCB H262 H14 H  0 0 N N N N N N -18.712 -11.804 4.616  6.866   2.285  -0.635 H262 XCB 51 
XCB H281 H15 H  0 0 N N N N N N -21.344 -9.647  4.724  10.171  0.716  0.969  H281 XCB 52 
XCB H282 H16 H  0 0 N N N N N N -19.852 -9.389  3.757  9.806   0.875  -0.765 H282 XCB 53 
XCB H283 H17 H  0 0 N N N N N N -21.463 -9.282  2.969  9.415   2.204  0.352  H283 XCB 54 
XCB H331 H18 H  0 0 N N N N N N -22.288 -13.878 8.322  2.482   1.482  0.789  H331 XCB 55 
XCB H351 H19 H  0 0 N N N N N N -21.286 -14.680 10.233 0.827   1.922  -1.770 H351 XCB 56 
XCB H361 H20 H  0 0 N N N N N N -21.763 -15.914 12.331 -1.442  2.618  -2.349 H361 XCB 57 
XCB H371 H21 H  0 0 N N N N N N -22.705 -14.779 14.287 -3.358  1.161  -1.845 H371 XCB 58 
XCB H112 H22 H  0 0 N N N N N N -31.430 -15.213 18.073 -12.208 2.235  0.073  H112 XCB 59 
XCB H111 H24 H  0 0 N N N N N N -29.827 -15.030 18.322 -10.984 1.795  -0.964 H111 XCB 60 
XCB H161 H25 H  0 0 N N N N N N -23.001 -10.127 12.515 -0.945  -2.678 0.266  H161 XCB 61 
XCB H2   H26 H  0 1 N N N N N N -22.736 -7.520  10.167 1.938   -4.645 1.516  H2   XCB 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XCB O29 S27  DOUB N N 1  
XCB S27 O30  DOUB N N 2  
XCB S27 C28  SING N N 3  
XCB S27 C26  SING N N 4  
XCB C26 C25  SING N N 5  
XCB CL1 C31  SING N N 6  
XCB C25 C31  DOUB Y N 7  
XCB C25 C24  SING Y N 8  
XCB C31 C33  SING Y N 9  
XCB C24 C23  DOUB Y N 10 
XCB C33 C22  DOUB Y N 11 
XCB C23 C22  SING Y N 12 
XCB C22 C21  SING N N 13 
XCB O20 C18  DOUB N N 14 
XCB C18 C17  SING N N 15 
XCB C18 O19  SING N N 16 
XCB C21 C17  DOUB Y N 17 
XCB C21 C34  SING Y N 18 
XCB C17 N16  SING Y N 19 
XCB C34 C35  DOUB Y N 20 
XCB C34 C15  SING Y N 21 
XCB C35 C36  SING Y N 22 
XCB N16 C15  SING Y N 23 
XCB C15 C14  DOUB Y N 24 
XCB C36 C37  DOUB Y N 25 
XCB C37 C14  SING Y N 26 
XCB C14 C02  SING N N 27 
XCB O05 C04  DOUB N N 28 
XCB C04 C06  SING N N 29 
XCB C04 O03  SING N N 30 
XCB C07 C06  DOUB Y N 31 
XCB C07 C08  SING Y N 32 
XCB C02 O03  SING N N 33 
XCB C02 C01  SING N N 34 
XCB C06 C13  SING Y N 35 
XCB C08 C09  DOUB Y N 36 
XCB C09 C12  SING Y N 37 
XCB C09 C10  SING N N 38 
XCB C13 C12  DOUB Y N 39 
XCB C10 N11  SING N N 40 
XCB C13 H131 SING N N 41 
XCB C10 H102 SING N N 42 
XCB C10 H101 SING N N 43 
XCB C01 H013 SING N N 44 
XCB C01 H011 SING N N 45 
XCB C01 H012 SING N N 46 
XCB C02 H021 SING N N 47 
XCB C07 H071 SING N N 48 
XCB C08 H081 SING N N 49 
XCB C12 H121 SING N N 50 
XCB C23 H231 SING N N 51 
XCB C24 H241 SING N N 52 
XCB C26 H261 SING N N 53 
XCB C26 H262 SING N N 54 
XCB C28 H281 SING N N 55 
XCB C28 H282 SING N N 56 
XCB C28 H283 SING N N 57 
XCB C33 H331 SING N N 58 
XCB C35 H351 SING N N 59 
XCB C36 H361 SING N N 60 
XCB C37 H371 SING N N 61 
XCB N11 H112 SING N N 62 
XCB N11 H111 SING N N 63 
XCB N16 H161 SING N N 64 
XCB O19 H2   SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XCB InChI            InChI                1.06  "InChI=1S/C27H25ClN2O6S/c1-15(36-27(33)17-8-6-16(13-29)7-9-17)20-4-3-5-21-23(25(26(31)32)30-24(20)21)18-10-11-19(22(28)12-18)14-37(2,34)35/h3-12,15,30H,13-14,29H2,1-2H3,(H,31,32)/t15-/m0/s1" 
XCB InChIKey         InChI                1.06  XWLZXMNTBNSDQV-HNNXBMFYSA-N                                                                                                                                                                    
XCB SMILES_CANONICAL CACTVS               3.385 "C[C@H](OC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4"                                                                                                                
XCB SMILES           CACTVS               3.385 "C[CH](OC(=O)c1ccc(CN)cc1)c2cccc3c2[nH]c(C(O)=O)c3c4ccc(C[S](C)(=O)=O)c(Cl)c4"                                                                                                                 
XCB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)OC(=O)c4ccc(cc4)CN"                                                                                                                 
XCB SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)Cl)CS(=O)(=O)C)C(=O)O)OC(=O)c4ccc(cc4)CN"                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           XCB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[4-(aminomethyl)phenyl]carbonyloxyethyl]-3-[3-chloranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XCB "Create component" 2023-06-06 PDBE 
XCB "Initial release"  2024-06-26 RCSB 
# 
