data_VZB
# 
_chem_comp.id                                    VZB 
_chem_comp.name                                  "(1R,2S,5R)-3-[(cyclohexyloxy)acetyl]-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H37 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         MPI64 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        435.557 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VZB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U9H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VZB C1   C1  C 0 1 N N N N N N -7.710  -18.986 -18.140 5.139  1.266  0.322  C1   VZB 1  
VZB C11  C2  C 0 1 N N N N N N -9.371  -17.449 -19.025 3.129  -0.039 0.364  C11  VZB 2  
VZB C12  C3  C 0 1 N N N N N N -9.606  -16.211 -18.198 1.760  -0.145 -0.256 C12  VZB 3  
VZB C13  C4  C 0 1 N N N N N N -8.069  -15.047 -19.779 1.164  -2.191 1.129  C13  VZB 4  
VZB C14  C5  C 0 1 N N S N N N -9.099  -13.883 -17.888 -0.453 -1.394 -0.377 C14  VZB 5  
VZB C15  C6  C 0 1 N N N N N N -10.515 -13.384 -18.045 -1.484 -0.866 0.588  C15  VZB 6  
VZB C16  C7  C 0 1 N N S N N N -7.552  -13.619 -19.778 0.527  -3.458 0.518  C16  VZB 7  
VZB C17  C8  C 0 1 N N S N N N -12.514 -12.459 -16.996 -3.768 -0.215 1.133  C17  VZB 8  
VZB C18  C9  C 0 1 N N N N N N -6.632  -13.313 -18.602 0.725  -3.715 -0.977 C18  VZB 9  
VZB C19  C10 C 0 1 N N N N N N -13.420 -13.230 -16.031 -4.899 0.458  0.353  C19  VZB 10 
VZB C2   C11 C 0 1 N N N N N N -7.286  -19.518 -16.767 5.493  2.754  0.282  C2   VZB 11 
VZB C20  C12 C 0 1 N N S N N N -13.503 -14.696 -16.433 -4.356 1.692  -0.370 C20  VZB 12 
VZB C21  C13 C 0 1 N N N N N N -14.270 -14.890 -17.738 -3.891 2.757  0.650  C21  VZB 13 
VZB C22  C14 C 0 1 N N N N N N -15.037 -16.192 -17.530 -4.296 4.069  -0.058 C22  VZB 14 
VZB C23  C15 C 0 1 N N N N N N -6.203  -14.375 -17.584 1.831  -2.932 -1.687 C23  VZB 15 
VZB C24  C16 C 0 1 N N N N N N -14.291 -15.513 -15.449 -5.457 2.376  -1.150 C24  VZB 16 
VZB C25  C17 C 0 1 N N N N N N -5.719  -12.088 -18.724 0.499  -5.141 -1.484 C25  VZB 17 
VZB C3   C18 C 0 1 N N N N N N -5.839  -20.000 -16.741 6.903  2.958  0.841  C3   VZB 18 
VZB C34  C19 C 0 1 N N R N N N -8.113  -12.906 -18.545 -0.538 -2.932 -0.467 C34  VZB 19 
VZB C4   C20 C 0 1 N N N N N N -5.289  -19.998 -18.147 7.906  2.171  -0.006 C4   VZB 20 
VZB C5   C21 C 0 1 N N N N N N -5.375  -18.604 -18.738 7.552  0.684  0.034  C5   VZB 21 
VZB C6   C22 C 0 1 N N N N N N -6.695  -17.907 -18.453 6.142  0.480  -0.525 C6   VZB 22 
VZB C8   C23 C 0 1 N N N N N N -12.506 -10.982 -16.602 -4.335 -1.373 1.957  C8   VZB 23 
VZB N13  N1  N 0 1 N N N N N N -8.956  -15.133 -18.618 0.921  -1.129 0.125  N13  VZB 24 
VZB N16  N2  N 0 1 N N N N N N -11.151 -12.983 -16.949 -2.766 -0.727 0.195  N16  VZB 25 
VZB N23  N3  N 0 1 N N N N N N -15.119 -16.348 -16.083 -5.404 3.707  -0.949 N23  VZB 26 
VZB O1   O1  O 0 1 N N N N N N -9.062  -18.508 -18.128 3.822  1.076  -0.200 O1   VZB 27 
VZB O26  O2  O 0 1 N N N N N N -14.149 -15.405 -14.244 -6.270 1.811  -1.850 O26  VZB 28 
VZB O33  O3  O 0 1 N N N N N N -10.346 -16.203 -17.217 1.411  0.656  -1.098 O33  VZB 29 
VZB O38  O4  O 0 1 N N N N N N -11.052 -13.362 -19.153 -1.160 -0.567 1.718  O38  VZB 30 
VZB O9   O5  O 0 1 N N N N N N -13.811 -10.401 -16.763 -5.044 -2.266 1.097  O9   VZB 31 
VZB H1   H1  H 0 1 N N N N N N -7.606  -19.796 -18.877 5.176  0.911  1.352  H1   VZB 32 
VZB H11  H2  H 0 1 N N N N N N -10.276 -17.695 -19.599 3.031  0.100  1.440  H11  VZB 33 
VZB H111 H3  H 0 0 N N N N N N -8.531  -17.285 -19.717 3.689  -0.953 0.165  H111 VZB 34 
VZB H13  H4  H 0 1 N N N N N N -8.624  -15.256 -20.705 0.680  -1.940 2.073  H13  VZB 35 
VZB H131 H5  H 0 0 N N N N N N -7.236  -15.759 -19.682 2.234  -2.336 1.278  H131 VZB 36 
VZB H14  H6  H 0 1 N N N N N N -8.852  -14.011 -16.824 -0.590 -0.947 -1.362 H14  VZB 37 
VZB H16  H7  H 0 1 N N N N N N -7.438  -13.071 -20.725 0.328  -4.296 1.186  H16  VZB 38 
VZB H17  H8  H 0 1 N N N N N N -12.916 -12.554 -18.015 -3.303 0.512  1.800  H17  VZB 39 
VZB H19  H9  H 0 1 N N N N N N -14.428 -12.791 -16.053 -5.304 -0.242 -0.377 H19  VZB 40 
VZB H191 H10 H 0 0 N N N N N N -13.010 -13.157 -15.013 -5.687 0.760  1.044  H191 VZB 41 
VZB H24  H11 H 0 1 N N N N N N -7.401  -18.712 -16.027 5.456  3.109  -0.748 H24  VZB 42 
VZB H2   H12 H 0 1 N N N N N N -7.942  -20.359 -16.498 4.779  3.314  0.885  H2   VZB 43 
VZB H20  H13 H 0 1 N N N N N N -12.489 -15.109 -16.536 -3.536 1.414  -1.033 H20  VZB 44 
VZB H21  H14 H 0 1 N N N N N N -13.578 -14.976 -18.588 -4.418 2.646  1.597  H21  VZB 45 
VZB H211 H15 H 0 0 N N N N N N -14.962 -14.053 -17.912 -2.812 2.710  0.798  H211 VZB 46 
VZB H221 H16 H 0 0 N N N N N N -14.496 -17.037 -17.981 -4.626 4.806  0.675  H221 VZB 47 
VZB H22  H17 H 0 1 N N N N N N -16.043 -16.124 -17.970 -3.458 4.461  -0.635 H22  VZB 48 
VZB H232 H18 H 0 0 N N N N N N -5.132  -14.592 -17.709 2.632  -3.613 -1.976 H232 VZB 49 
VZB H23  H19 H 0 1 N N N N N N -6.384  -14.001 -16.566 1.423  -2.453 -2.577 H23  VZB 50 
VZB H231 H20 H 0 0 N N N N N N -6.785  -15.294 -17.746 2.227  -2.171 -1.014 H231 VZB 51 
VZB H252 H21 H 0 0 N N N N N N -4.669  -12.415 -18.762 0.071  -5.747 -0.685 H252 VZB 52 
VZB H251 H22 H 0 0 N N N N N N -5.965  -11.538 -19.644 -0.186 -5.121 -2.332 H251 VZB 53 
VZB H25  H23 H 0 1 N N N N N N -5.867  -11.432 -17.853 1.451  -5.571 -1.795 H25  VZB 54 
VZB H31  H24 H 0 1 N N N N N N -5.239  -19.328 -16.110 7.155  4.018  0.812  H31  VZB 55 
VZB H3   H25 H 0 1 N N N N N N -5.798  -21.020 -16.332 6.940  2.603  1.871  H3   VZB 56 
VZB H341 H26 H 0 0 N N N N N N -8.379  -11.841 -18.614 -1.527 -3.379 -0.572 H341 VZB 57 
VZB H41  H27 H 0 1 N N N N N N -4.238  -20.320 -18.127 7.869  2.526  -1.036 H41  VZB 58 
VZB H4   H28 H 0 1 N N N N N N -5.874  -20.693 -18.767 8.910  2.317  0.393  H4   VZB 59 
VZB H51  H29 H 0 1 N N N N N N -4.561  -17.996 -18.316 8.266  0.124  -0.569 H51  VZB 60 
VZB H5   H30 H 0 1 N N N N N N -5.249  -18.679 -19.828 7.589  0.329  1.064  H5   VZB 61 
VZB H6   H31 H 0 1 N N N N N N -7.016  -17.331 -19.334 5.890  -0.580 -0.496 H6   VZB 62 
VZB H61  H32 H 0 1 N N N N N N -6.586  -17.230 -17.593 6.105  0.835  -1.555 H61  VZB 63 
VZB H81  H33 H 0 1 N N N N N N -12.199 -10.892 -15.550 -3.518 -1.907 2.443  H81  VZB 64 
VZB H8   H34 H 0 1 N N N N N N -11.791 -10.443 -17.240 -5.014 -0.981 2.714  H8   VZB 65 
VZB HN16 H35 H 0 0 N N N N N N -10.683 -13.042 -16.067 -3.025 -0.967 -0.708 HN16 VZB 66 
VZB HN23 H36 H 0 0 N N N N N N -15.721 -17.000 -15.622 -6.018 4.345  -1.345 HN23 VZB 67 
VZB HO9  H37 H 0 1 N N N N N N -13.783 -9.485  -16.513 -5.432 -3.026 1.553  HO9  VZB 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VZB O26 C24  DOUB N N 1  
VZB C24 N23  SING N N 2  
VZB C24 C20  SING N N 3  
VZB N23 C22  SING N N 4  
VZB C22 C21  SING N N 5  
VZB C21 C20  SING N N 6  
VZB C20 C19  SING N N 7  
VZB C19 C17  SING N N 8  
VZB C8  C17  SING N N 9  
VZB C17 N16  SING N N 10 
VZB O9  C8   SING N N 11 
VZB N16 C15  SING N N 12 
VZB O38 C15  DOUB N N 13 
VZB C15 C14  SING N N 14 
VZB C14 C34  SING N N 15 
VZB C14 N13  SING N N 16 
VZB C34 C18  SING N N 17 
VZB C34 C16  SING N N 18 
VZB C23 C18  SING N N 19 
VZB C25 C18  SING N N 20 
VZB C18 C16  SING N N 21 
VZB C16 C13  SING N N 22 
VZB C13 N13  SING N N 23 
VZB N13 C12  SING N N 24 
VZB C12 O33  DOUB N N 25 
VZB C11 C12  SING N N 26 
VZB O1  C11  SING N N 27 
VZB C1  O1   SING N N 28 
VZB C1  C2   SING N N 29 
VZB C6  C1   SING N N 30 
VZB C2  C3   SING N N 31 
VZB C3  C4   SING N N 32 
VZB C4  C5   SING N N 33 
VZB C5  C6   SING N N 34 
VZB C1  H1   SING N N 35 
VZB C11 H11  SING N N 36 
VZB C11 H111 SING N N 37 
VZB C13 H13  SING N N 38 
VZB C13 H131 SING N N 39 
VZB C14 H14  SING N N 40 
VZB C16 H16  SING N N 41 
VZB C17 H17  SING N N 42 
VZB C19 H19  SING N N 43 
VZB C19 H191 SING N N 44 
VZB C2  H24  SING N N 45 
VZB C2  H2   SING N N 46 
VZB C20 H20  SING N N 47 
VZB C21 H21  SING N N 48 
VZB C21 H211 SING N N 49 
VZB C22 H221 SING N N 50 
VZB C22 H22  SING N N 51 
VZB C23 H232 SING N N 52 
VZB C23 H23  SING N N 53 
VZB C23 H231 SING N N 54 
VZB C25 H252 SING N N 55 
VZB C25 H251 SING N N 56 
VZB C25 H25  SING N N 57 
VZB C3  H31  SING N N 58 
VZB C3  H3   SING N N 59 
VZB C34 H341 SING N N 60 
VZB C4  H41  SING N N 61 
VZB C4  H4   SING N N 62 
VZB C5  H51  SING N N 63 
VZB C5  H5   SING N N 64 
VZB C6  H6   SING N N 65 
VZB C6  H61  SING N N 66 
VZB C8  H81  SING N N 67 
VZB C8  H8   SING N N 68 
VZB N16 HN16 SING N N 69 
VZB N23 HN23 SING N N 70 
VZB O9  HO9  SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VZB SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)COC1CCCCC1"                                                                                                                                           
VZB InChI            InChI                1.06  "InChI=1S/C23H37N3O5/c1-23(2)17-11-26(18(28)13-31-16-6-4-3-5-7-16)20(19(17)23)22(30)25-15(12-27)10-14-8-9-24-21(14)29/h14-17,19-20,27H,3-13H2,1-2H3,(H,24,29)(H,25,30)/t14-,15+,17-,19-,20-/m0/s1" 
VZB InChIKey         InChI                1.06  ZRLOCCWLJNUDPY-SSGANFLRSA-N                                                                                                                                                                        
VZB SMILES_CANONICAL CACTVS               3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)COC4CCCCC4"                                                                                                                    
VZB SMILES           CACTVS               3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)COC4CCCCC4"                                                                                                                            
VZB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)COC3CCCCC3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO)C"                                                                                                                    
VZB SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)COC3CCCCC3)C(=O)NC(CC4CCNC4=O)CO)C"                                                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VZB "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5R)-3-[(cyclohexyloxy)acetyl]-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                
VZB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-(2-cyclohexyloxyethanoyl)-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VZB "Create component" 2023-09-20 RCSB 
VZB "Initial release"  2024-09-25 RCSB 
VZB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      VZB 
_pdbx_chem_comp_synonyms.name         MPI64 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            VZB 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
