data_VPB
# 
_chem_comp.id                                    VPB 
_chem_comp.name                                  "(4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H21 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-14 
_chem_comp.pdbx_modified_date                    2023-11-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        391.420 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VPB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U6S 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VPB C1  C1  C 0 1 N N N N N N 43.254 -19.960 21.181 -4.477 -0.644 0.240  C1  VPB 1  
VPB C2  C2  C 0 1 N N N N N N 44.083 -21.510 22.968 -6.867 -0.609 0.798  C2  VPB 2  
VPB C3  C3  C 0 1 N N N N N N 44.771 -21.474 24.335 -7.901 0.283  0.102  C3  VPB 3  
VPB C4  C4  C 0 1 N N N N N N 44.856 -19.226 24.591 -6.541 2.241  0.378  C4  VPB 4  
VPB C5  C5  C 0 1 N N N N N N 43.856 -19.033 23.452 -5.437 1.450  1.088  C5  VPB 5  
VPB C6  C6  C 0 1 N N N N N N 42.868 -18.567 20.672 -3.138 0.040  0.138  C6  VPB 6  
VPB C7  C7  C 0 1 N N N N N N 44.045 -17.830 20.032 -2.100 -0.949 -0.396 C7  VPB 7  
VPB C8  C8  C 0 1 Y N N N N N 46.032 -16.691 20.407 0.210  -1.046 -0.954 C8  VPB 8  
VPB O1  O1  O 0 1 N N N N N N 43.145 -20.883 20.448 -4.589 -1.809 -0.078 O1  VPB 9  
VPB C17 C9  C 0 1 Y N N N N N 46.319 -13.480 25.154 5.537  2.270  -0.787 C17 VPB 10 
VPB C16 C10 C 0 1 Y N N N N N 45.846 -13.445 23.858 4.631  2.733  -1.668 C16 VPB 11 
VPB C15 C11 C 0 1 Y N N N N N 46.053 -14.493 23.026 3.311  2.247  -1.661 C15 VPB 12 
VPB O2  O2  O 0 1 N N N N N N 45.616 -20.364 24.388 -7.802 1.612  0.620  O2  VPB 13 
VPB C14 C12 C 0 1 Y N N N N N 46.726 -15.579 23.478 2.945  1.300  -0.752 C14 VPB 14 
VPB C13 C13 C 0 1 Y N N N N N 47.058 -16.353 21.266 1.475  -0.478 -1.074 C13 VPB 15 
VPB C12 C14 C 0 1 Y N N N N N 48.218 -15.757 20.765 2.532  -1.242 -1.544 C12 VPB 16 
VPB C9  C15 C 0 1 Y N N N N N 46.119 -16.424 19.042 0.014  -2.373 -1.300 C9  VPB 17 
VPB C11 C16 C 0 1 Y N N N N N 48.316 -15.492 19.402 2.328  -2.564 -1.892 C11 VPB 18 
VPB C10 C17 C 0 1 Y N N N N N 47.265 -15.822 18.547 1.072  -3.129 -1.768 C10 VPB 19 
VPB C18 C18 C 0 1 Y N N N N N 47.192 -15.593 24.808 3.907  0.820  0.173  C18 VPB 20 
VPB C19 C19 C 0 1 Y N N N N N 47.885 -16.491 25.621 3.829  -0.115 1.184  C19 VPB 21 
VPB C20 C20 C 0 1 Y N N N N N 48.049 -15.866 26.901 5.106  -0.187 1.780  C20 VPB 22 
VPB C21 C21 C 0 1 N N N N N N 48.744 -16.427 28.147 5.487  -1.030 2.873  C21 VPB 23 
VPB C22 C22 C 0 1 Y N N N N N 47.433 -14.625 26.791 5.921  0.706  1.112  C22 VPB 24 
VPB N1  N1  N 0 1 N N N N N N 43.725 -20.167 22.550 -5.549 0.037  0.690  N1  VPB 25 
VPB N2  N2  N 0 1 Y N N N N N 46.985 -14.563 25.591 5.194  1.314  0.140  N2  VPB 26 
VPB N3  N3  N 0 1 N N N N N N 49.259 -16.834 29.079 5.789  -1.699 3.740  N3  VPB 27 
VPB O3  O3  O 0 1 N N N N N N 44.907 -17.274 20.968 -0.830 -0.301 -0.492 O3  VPB 28 
VPB O4  O4  O 0 1 N N N N N N 46.903 -16.667 22.622 1.674  0.822  -0.731 O4  VPB 29 
VPB H1  H1  H 0 1 N N N N N N 43.173 -22.124 23.036 -7.132 -0.728 1.849  H1  VPB 30 
VPB H2  H2  H 0 1 N N N N N N 44.768 -21.950 22.228 -6.839 -1.585 0.314  H2  VPB 31 
VPB H3  H3  H 0 1 N N N N N N 44.012 -21.399 25.128 -7.709 0.295  -0.970 H3  VPB 32 
VPB H4  H4  H 0 1 N N N N N N 45.359 -22.393 24.476 -8.902 -0.106 0.289  H4  VPB 33 
VPB H5  H5  H 0 1 N N N N N N 45.521 -18.351 24.639 -6.563 3.261  0.763  H5  VPB 34 
VPB H6  H6  H 0 1 N N N N N N 44.308 -19.322 25.540 -6.343 2.261  -0.694 H6  VPB 35 
VPB H7  H7  H 0 1 N N N N N N 44.176 -18.162 22.861 -4.461 1.837  0.794  H7  VPB 36 
VPB H8  H8  H 0 1 N N N N N N 42.869 -18.833 23.895 -5.558 1.538  2.167  H8  VPB 37 
VPB H9  H9  H 0 1 N N N N N N 42.498 -17.972 21.520 -3.214 0.888  -0.541 H9  VPB 38 
VPB H10 H10 H 0 1 N N N N N N 42.070 -18.674 19.923 -2.833 0.390  1.124  H10 VPB 39 
VPB H11 H11 H 0 1 N N N N N N 44.611 -18.542 19.413 -2.023 -1.798 0.284  H11 VPB 40 
VPB H12 H12 H 0 1 N N N N N N 43.651 -17.024 19.396 -2.405 -1.299 -1.382 H12 VPB 41 
VPB H13 H13 H 0 1 N N N N N N 46.155 -12.641 25.814 6.548  2.651  -0.811 H13 VPB 42 
VPB H14 H14 H 0 1 N N N N N N 45.308 -12.577 23.506 4.921  3.484  -2.388 H14 VPB 43 
VPB H15 H15 H 0 1 N N N N N N 45.685 -14.464 22.011 2.590  2.624  -2.372 H15 VPB 44 
VPB H16 H16 H 0 1 N N N N N N 49.031 -15.504 21.429 3.515  -0.804 -1.638 H16 VPB 45 
VPB H17 H17 H 0 1 N N N N N N 45.306 -16.682 18.380 -0.966 -2.817 -1.204 H17 VPB 46 
VPB H18 H18 H 0 1 N N N N N N 49.208 -15.030 19.006 3.152  -3.158 -2.259 H18 VPB 47 
VPB H19 H19 H 0 1 N N N N N N 47.345 -15.607 17.492 0.918  -4.163 -2.038 H19 VPB 48 
VPB H20 H20 H 0 1 N N N N N N 48.233 -17.474 25.339 2.955  -0.684 1.467  H20 VPB 49 
VPB H21 H21 H 0 1 N N N N N N 47.349 -13.869 27.558 6.963  0.890  1.328  H21 VPB 50 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VPB C10 C9  DOUB Y N 1  
VPB C10 C11 SING Y N 2  
VPB C9  C8  SING Y N 3  
VPB C11 C12 DOUB Y N 4  
VPB C7  C6  SING N N 5  
VPB C7  O3  SING N N 6  
VPB C8  O3  SING N N 7  
VPB C8  C13 DOUB Y N 8  
VPB O1  C1  DOUB N N 9  
VPB C6  C1  SING N N 10 
VPB C12 C13 SING Y N 11 
VPB C1  N1  SING N N 12 
VPB C13 O4  SING N N 13 
VPB N1  C2  SING N N 14 
VPB N1  C5  SING N N 15 
VPB O4  C14 SING N N 16 
VPB C2  C3  SING N N 17 
VPB C15 C14 DOUB Y N 18 
VPB C15 C16 SING Y N 19 
VPB C5  C4  SING N N 20 
VPB C14 C18 SING Y N 21 
VPB C16 C17 DOUB Y N 22 
VPB C3  O2  SING N N 23 
VPB O2  C4  SING N N 24 
VPB C18 N2  SING Y N 25 
VPB C18 C19 DOUB Y N 26 
VPB C17 N2  SING Y N 27 
VPB N2  C22 SING Y N 28 
VPB C19 C20 SING Y N 29 
VPB C22 C20 DOUB Y N 30 
VPB C20 C21 SING N N 31 
VPB C21 N3  TRIP N N 32 
VPB C2  H1  SING N N 33 
VPB C2  H2  SING N N 34 
VPB C3  H3  SING N N 35 
VPB C3  H4  SING N N 36 
VPB C4  H5  SING N N 37 
VPB C4  H6  SING N N 38 
VPB C5  H7  SING N N 39 
VPB C5  H8  SING N N 40 
VPB C6  H9  SING N N 41 
VPB C6  H10 SING N N 42 
VPB C7  H11 SING N N 43 
VPB C7  H12 SING N N 44 
VPB C17 H13 SING N N 45 
VPB C16 H14 SING N N 46 
VPB C15 H15 SING N N 47 
VPB C12 H16 SING N N 48 
VPB C9  H17 SING N N 49 
VPB C11 H18 SING N N 50 
VPB C10 H19 SING N N 51 
VPB C19 H20 SING N N 52 
VPB C22 H21 SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VPB SMILES           ACDLabs              12.01 "O=C(CCOc1ccccc1Oc1cccn2cc(C#N)cc21)N1CCOCC1"                                                                                           
VPB InChI            InChI                1.06  "InChI=1S/C22H21N3O4/c23-15-17-14-18-19(6-3-8-25(18)16-17)29-21-5-2-1-4-20(21)28-11-7-22(26)24-9-12-27-13-10-24/h1-6,8,14,16H,7,9-13H2" 
VPB InChIKey         InChI                1.06  QXEAIZYIBWVAEX-UHFFFAOYSA-N                                                                                                             
VPB SMILES_CANONICAL CACTVS               3.385 "O=C(CCOc1ccccc1Oc2cccn3cc(cc23)C#N)N4CCOCC4"                                                                                           
VPB SMILES           CACTVS               3.385 "O=C(CCOc1ccccc1Oc2cccn3cc(cc23)C#N)N4CCOCC4"                                                                                           
VPB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCOCC2)Oc3cccn4c3cc(c4)C#N"                                                                                       
VPB SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCOCC2)Oc3cccn4c3cc(c4)C#N"                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VPB "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-8-{2-[3-(morpholin-4-yl)-3-oxopropoxy]phenoxy}indolizine-2-carbonitrile"     
VPB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "8-[2-(3-morpholin-4-yl-3-oxidanylidene-propoxy)phenoxy]indolizine-2-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VPB "Create component" 2023-09-14 RCSB 
VPB "Initial release"  2023-11-08 RCSB 
# 
