data_VEB
#

_chem_comp.id                                   VEB
_chem_comp.name                                 "[oxidanyl-[(2~{S},3~{S},5~{R},6~{S})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H21 O26 P7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        PCP-InsP7
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-05-11
_chem_comp.pdbx_modified_date                   2021-05-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       738.042
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VEB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7AUP
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VEB  C1   C1   C  0  1  N  N  N   8.284  -16.043   2.353  -0.759  -0.130  -0.351  C1   VEB   1  
VEB  C2   C2   C  0  1  N  N  S   6.778  -15.904   2.257   0.053  -1.380  -0.006  C2   VEB   2  
VEB  C3   C3   C  0  1  N  N  S   6.240  -17.262   1.834   1.460  -1.252  -0.593  C3   VEB   3  
VEB  C4   C4   C  0  1  N  N  N   6.679  -18.381   2.769   2.148  -0.018  -0.005  C4   VEB   4  
VEB  C5   C5   C  0  1  N  N  R   8.180  -18.365   3.031   1.336   1.232  -0.350  C5   VEB   5  
VEB  C6   C6   C  0  1  N  N  S   8.685  -16.999   3.455  -0.071   1.104   0.237  C6   VEB   6  
VEB  CB1  C7   C  0  1  N  N  N   9.866  -12.955   0.667  -4.859  -0.553   0.346  CB1  VEB   7  
VEB  O11  O1   O  0  1  N  N  N   8.958  -14.750   2.446  -2.073  -0.249   0.198  O11  VEB   8  
VEB  O12  O2   O  0  1  N  N  N   6.198  -15.493   3.544   0.140  -1.514   1.414  O12  VEB   9  
VEB  O13  O3   O  0  1  N  N  N   4.778  -17.231   1.762   2.218  -2.419  -0.270  O13  VEB  10  
VEB  O14  O4   O  0  1  N  N  N   6.386  -19.643   2.080   3.462   0.101  -0.553  O14  VEB  11  
VEB  O15  O5   O  0  1  N  N  N   8.498  -19.338   4.064   1.978   2.384   0.199  O15  VEB  12  
VEB  O16  O6   O  0  1  N  N  N  10.152  -17.076   3.529  -0.830   2.271  -0.085  O16  VEB  13  
VEB  O21  O7   O  0  1  N  N  N  11.332  -15.052   1.527  -3.560   1.217  -1.401  O21  VEB  14  
VEB  O22  O8   O  0  1  N  N  N   5.214  -13.597   2.165   0.182  -4.027   1.651  O22  VEB  15  
VEB  O23  O9   O  0  1  N  N  N   3.342  -18.767   0.436   3.743  -4.523  -0.672  O23  VEB  16  
VEB  O24  O10  O  0  1  N  N  N   4.490  -21.113   1.656   4.699   1.122   1.396  O24  VEB  17  
VEB  O25  O11  O  0  1  N  N  N  10.868  -19.873   4.435   3.687   3.102  -1.665  O25  VEB  18  
VEB  O26  O12  O  0  1  N  N  N  11.853  -15.439   4.241  -2.311   2.452   1.951  O26  VEB  19  
VEB  O31  O13  O  0  1  N  N  N   9.421  -15.425  -0.083  -3.310  -1.270  -1.752  O31  VEB  20  
VEB  O32  O14  O  0  1  N  N  N   4.478  -13.974   4.545  -0.039  -2.671   3.769  O32  VEB  21  
VEB  O33  O15  O  0  1  N  N  N   3.449  -16.307  -0.093   1.665  -4.091  -2.223  O33  VEB  22  
VEB  O34  O16  O  0  1  N  N  N   6.289  -21.829   3.260   4.949  -1.365   1.045  O34  VEB  23  
VEB  O35  O17  O  0  1  N  N  N   9.928  -20.259   2.132   1.384   4.126  -1.528  O35  VEB  24  
VEB  O36  O18  O  0  1  N  N  N  11.811  -17.731   5.277  -0.276   3.943   1.867  O36  VEB  25  
VEB  O42  O19  O  0  1  N  N  N   6.809  -13.139   4.056  -2.023  -2.866   2.054  O42  VEB  26  
VEB  O43  O20  O  0  1  N  N  N   5.393  -17.803  -0.659   3.700  -2.600  -2.306  O43  VEB  27  
VEB  O44  O21  O  0  1  N  N  N   4.641  -20.035   3.921   6.078   0.367  -0.579  O44  VEB  28  
VEB  O45  O22  O  0  1  N  N  N   9.195  -21.685   4.086   3.049   4.785   0.252  O45  VEB  29  
VEB  O46  O23  O  0  1  N  N  N  10.021  -16.051   5.861  -2.355   4.375   0.316  O46  VEB  30  
VEB  O51  O24  O  0  1  N  N  N  11.317  -10.825   0.287  -6.509   0.799  -1.316  O51  VEB  31  
VEB  O71  O25  O  0  1  N  N  N  10.592  -11.240   2.666  -6.263  -1.663  -1.814  O71  VEB  32  
VEB  O61  O26  O  0  1  N  N  N  12.325  -12.733   1.593  -7.650  -0.817   0.252  O61  VEB  33  
VEB  PA1  P1   P  0  1  N  N  N   9.904  -14.688   1.160  -3.406  -0.227  -0.706  PA1  VEB  34  
VEB  PB1  P2   P  0  1  N  N  N  11.102  -11.858   1.375  -6.367  -0.529  -0.677  PB1  VEB  35  
VEB  PA2  P3   P  0  1  N  N  N   5.649  -13.994   3.569  -0.422  -2.796   2.210  PA2  VEB  36  
VEB  PA3  P4   P  0  1  N  N  N   4.235  -17.546   0.297   2.850  -3.391  -1.388  PA3  VEB  37  
VEB  PA4  P5   P  0  1  N  N  N   5.409  -20.685   2.782   4.795   0.079   0.350  PA4  VEB  38  
VEB  PA5  P6   P  0  1  N  N  N   9.671  -20.319   3.634   2.500   3.611  -0.704  PA5  VEB  39  
VEB  PA6  P7   P  0  1  N  N  N  10.975  -16.558   4.794  -1.461   3.243   1.032  PA6  VEB  40  
VEB  H1   H1   H  0  1  N  N  N   8.611  -16.506   1.410  -0.825  -0.027  -1.434  H1   VEB  41  
VEB  H2   H2   H  0  1  N  N  N   6.532  -15.162   1.483  -0.437  -2.259  -0.424  H2   VEB  42  
VEB  H3   H3   H  0  1  N  N  N   6.636  -17.485   0.832   1.394  -1.149  -1.676  H3   VEB  43  
VEB  H4   H4   H  0  1  N  N  N   6.129  -18.317   3.720   2.214  -0.121   1.078  H4   VEB  44  
VEB  H5   H5   H  0  1  N  N  N   8.693  -18.648   2.100   1.270   1.334  -1.433  H5   VEB  45  
VEB  H6   H6   H  0  1  N  N  N   8.245  -16.698   4.417  -0.005   1.001   1.320  H6   VEB  46  
VEB  H7   H7   H  0  1  N  N  N   9.985  -12.922  -0.426  -4.754  -1.531   0.817  H7   VEB  47  
VEB  H8   H8   H  0  1  N  N  N   8.878  -12.557   0.941  -4.929   0.215   1.116  H8   VEB  48  
VEB  H9   H9   H  0  1  N  N  N  11.669  -15.684   0.903  -3.628   1.950  -0.774  H9   VEB  49  
VEB  H10  H10  H  0  1  N  N  N   3.679  -19.470  -0.107   4.156  -5.145  -1.286  H10  VEB  50  
VEB  H11  H11  H  0  1  N  N  N  11.573  -19.633   3.845   4.453   2.750  -1.192  H11  VEB  51  
VEB  H12  H12  H  0  1  N  N  N   3.688  -13.714   4.087  -0.347  -3.411   4.310  H12  VEB  52  
VEB  H13  H13  H  0  1  N  N  N   3.833  -15.920  -0.871   1.067  -4.627  -1.683  H13  VEB  53  
VEB  H14  H14  H  0  1  N  N  N   6.095  -22.610   2.756   5.017  -2.098   0.418  H14  VEB  54  
VEB  H15  H15  H  0  1  N  N  N  12.732  -17.541   5.141   0.321   4.479   1.328  H15  VEB  55  
VEB  H16  H16  H  0  1  N  N  N   7.045  -12.511   3.383  -2.486  -2.090   2.400  H16  VEB  56  
VEB  H17  H17  H  0  1  N  N  N   3.715  -20.019   3.710   6.918   0.369  -0.100  H17  VEB  57  
VEB  H18  H18  H  0  1  N  N  N   9.142  -22.266   3.337   3.381   5.557  -0.226  H18  VEB  58  
VEB  H19  H19  H  0  1  N  N  N  10.152  -15.118   5.986  -2.767   4.997   0.931  H19  VEB  59  
VEB  H20  H20  H  0  1  N  N  N  10.499  -10.301   2.553  -6.168  -2.561  -1.467  H20  VEB  60  
VEB  H21  H21  H  0  1  N  N  N  13.015  -12.468   0.996  -8.490  -0.819  -0.227  H21  VEB  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VEB  O43  PA3  DOUB  N  N   1  
VEB  O33  PA3  SING  N  N   2  
VEB  O31  PA1  DOUB  N  N   3  
VEB  O51  PB1  DOUB  N  N   4  
VEB  PA3  O23  SING  N  N   5  
VEB  PA3  O13  SING  N  N   6  
VEB  CB1  PA1  SING  N  N   7  
VEB  CB1  PB1  SING  N  N   8  
VEB  PA1  O21  SING  N  N   9  
VEB  PA1  O11  SING  N  N  10  
VEB  PB1  O61  SING  N  N  11  
VEB  PB1  O71  SING  N  N  12  
VEB  O24  PA4  DOUB  N  N  13  
VEB  O13  C3   SING  N  N  14  
VEB  C3   C2   SING  N  N  15  
VEB  C3   C4   SING  N  N  16  
VEB  O14  C4   SING  N  N  17  
VEB  O14  PA4  SING  N  N  18  
VEB  O35  PA5  DOUB  N  N  19  
VEB  O22  PA2  DOUB  N  N  20  
VEB  C2   C1   SING  N  N  21  
VEB  C2   O12  SING  N  N  22  
VEB  C1   O11  SING  N  N  23  
VEB  C1   C6   SING  N  N  24  
VEB  C4   C5   SING  N  N  25  
VEB  PA4  O34  SING  N  N  26  
VEB  PA4  O44  SING  N  N  27  
VEB  C5   C6   SING  N  N  28  
VEB  C5   O15  SING  N  N  29  
VEB  C6   O16  SING  N  N  30  
VEB  O16  PA6  SING  N  N  31  
VEB  O12  PA2  SING  N  N  32  
VEB  PA2  O42  SING  N  N  33  
VEB  PA2  O32  SING  N  N  34  
VEB  PA5  O15  SING  N  N  35  
VEB  PA5  O45  SING  N  N  36  
VEB  PA5  O25  SING  N  N  37  
VEB  O26  PA6  DOUB  N  N  38  
VEB  PA6  O36  SING  N  N  39  
VEB  PA6  O46  SING  N  N  40  
VEB  C1   H1   SING  N  N  41  
VEB  C2   H2   SING  N  N  42  
VEB  C3   H3   SING  N  N  43  
VEB  C4   H4   SING  N  N  44  
VEB  C5   H5   SING  N  N  45  
VEB  C6   H6   SING  N  N  46  
VEB  CB1  H7   SING  N  N  47  
VEB  CB1  H8   SING  N  N  48  
VEB  O21  H9   SING  N  N  49  
VEB  O23  H10  SING  N  N  50  
VEB  O25  H11  SING  N  N  51  
VEB  O32  H12  SING  N  N  52  
VEB  O33  H13  SING  N  N  53  
VEB  O34  H14  SING  N  N  54  
VEB  O36  H15  SING  N  N  55  
VEB  O42  H16  SING  N  N  56  
VEB  O44  H17  SING  N  N  57  
VEB  O45  H18  SING  N  N  58  
VEB  O46  H19  SING  N  N  59  
VEB  O71  H20  SING  N  N  60  
VEB  O61  H21  SING  N  N  61  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VEB  InChI             InChI                 1.03   "InChI=1S/C7H21O26P7/c8-34(9,10)1-35(11,12)28-2-3(29-36(13,14)15)5(31-38(19,20)21)7(33-40(25,26)27)6(32-39(22,23)24)4(2)30-37(16,17)18/h2-7H,1H2,(H,11,12)(H2,8,9,10)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)(H2,22,23,24)(H2,25,26,27)/t2-,3-,4-,5+,6-,7-/m0/s1"  
VEB  InChIKey          InChI                 1.03   IZNCMXVIYGYGJI-GESKJZQWSA-N  
VEB  SMILES_CANONICAL  CACTVS                3.385  "O[P](O)(=O)C[P](O)(=O)O[C@@H]1[C@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@H]1O[P](O)(O)=O"  
VEB  SMILES            CACTVS                3.385  "O[P](O)(=O)C[P](O)(=O)O[CH]1[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH]1O[P](O)(O)=O"  
VEB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C(P(=O)(O)O)P(=O)(O)OC1[C@@H]([C@H](C([C@H]([C@H]1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
VEB  SMILES            "OpenEye OEToolkits"  2.0.7  "C(P(=O)(O)O)P(=O)(O)OC1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O)OP(=O)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          VEB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[oxidanyl-[(2~{S},3~{S},5~{R},6~{S})-2,3,4,5,6-pentaphosphonooxycyclohexyl]oxy-phosphoryl]methylphosphonic acid"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VEB
_pdbx_chem_comp_synonyms.name        PCP-InsP7
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VEB  "Create component"  2021-05-11  PDBE  
VEB  "Initial release"   2021-05-19  RCSB  
##
