data_UOB
# 
_chem_comp.id                                    UOB 
_chem_comp.name                                  
;2'-OMe,4'beta-OMe uridine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  "RNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H17 N2 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-04-06 
_chem_comp.pdbx_modified_date                    2018-08-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        368.234 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UOB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6CY4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UOB "C1'" C1   C 0 1 N N R 32.952 30.948 17.013 1.064  0.410  0.479  "C1'" UOB 1  
UOB C2    C2   C 0 1 N N N 31.028 29.644 16.340 2.941  -0.970 1.173  C2    UOB 2  
UOB "C2'" C3   C 0 1 N N R 32.401 31.863 18.096 1.185  1.839  -0.108 "C2'" UOB 3  
UOB "C3'" C4   C 0 1 N N S 32.849 31.093 19.301 -0.312 2.222  -0.262 "C3'" UOB 4  
UOB C4    C5   C 0 1 N N N 30.987 27.228 16.417 4.506  -1.820 -0.340 C4    UOB 5  
UOB "C4'" C6   C 0 1 N N S 34.276 30.713 18.931 -0.962 0.868  -0.619 "C4'" UOB 6  
UOB C5    C7   C 0 1 N N N 32.283 27.234 16.915 3.808  -1.192 -1.398 C5    UOB 7  
UOB "C5'" C8   C 0 1 N N N 35.247 31.815 19.361 -2.313 0.738  0.086  "C5'" UOB 8  
UOB C6    C9   C 0 1 N N N 32.934 28.445 17.117 2.698  -0.475 -1.119 C6    UOB 9  
UOB CM    C10  C 0 1 N N N 35.477 29.320 20.579 0.079  0.729  -2.774 CM    UOB 10 
UOB "CM'" C11  C 0 1 N N N 32.246 33.956 17.149 3.266  2.781  0.619  "CM'" UOB 11 
UOB N1    N1   N 0 1 N N N 32.272 29.648 16.837 2.268  -0.368 0.175  N1    UOB 12 
UOB N3    N2   N 0 1 N N N 30.353 28.439 16.127 4.050  -1.691 0.923  N3    UOB 13 
UOB O2    O1   O 0 1 N N N 30.471 30.711 16.086 2.545  -0.858 2.317  O2    UOB 14 
UOB "O2'" O2   O 0 1 N N N 33.038 33.133 18.013 1.850  2.715  0.803  "O2'" UOB 15 
UOB "O3'" O3   O 0 1 N N N 32.890 31.947 20.459 -0.836 2.728  0.967  "O3'" UOB 16 
UOB O4    O4   O 0 1 N N N 30.396 26.166 16.233 5.510  -2.471 -0.567 O4    UOB 17 
UOB "O4'" O5   O 0 1 N N N 34.316 30.753 17.468 -0.079 -0.168 -0.172 "O4'" UOB 18 
UOB "O5'" O6   O 0 1 N N N 36.553 31.479 18.928 -2.951 -0.473 -0.325 "O5'" UOB 19 
UOB OM    O7   O 0 1 N N N 34.579 29.396 19.466 -1.143 0.775  -2.034 OM    UOB 20 
UOB OP1   O8   O 0 1 N N N 39.125 32.103 19.043 -4.302 -1.228 1.800  OP1   UOB 21 
UOB OP2   O9   O 0 1 N N N 37.199 33.669 20.031 -5.380 0.144  -0.023 OP2   UOB 22 
UOB P     P1   P 0 1 N N N 37.627 32.652 18.872 -4.394 -0.933 0.220  P     UOB 23 
UOB "H1'" H1   H 0 1 N N N 32.953 31.492 16.057 0.904  0.456  1.556  "H1'" UOB 24 
UOB "H2'" H2   H 0 1 N N N 31.304 31.931 18.042 1.688  1.825  -1.075 "H2'" UOB 25 
UOB "H3'" H3   H 0 1 N N N 32.229 30.199 19.461 -0.447 2.945  -1.066 "H3'" UOB 26 
UOB H5    H4   H 0 1 N N N 32.782 26.304 17.144 4.158  -1.284 -2.416 H5    UOB 27 
UOB "H5'" H5   H 0 1 N N N 35.235 31.909 20.457 -2.160 0.720  1.165  "H5'" UOB 28 
UOB H5S   H6   H 0 1 N N N 34.943 32.770 18.908 -2.943 1.588  -0.177 H5S   UOB 29 
UOB H6    H7   H 0 1 N N N 33.948 28.459 17.489 2.152  0.012  -1.914 H6    UOB 30 
UOB HM3   H8   H 0 1 N N N 35.610 28.268 20.872 0.712  1.567  -2.484 HM3   UOB 31 
UOB HM1   H9   H 0 1 N N N 36.450 29.747 20.295 0.596  -0.207 -2.563 HM1   UOB 32 
UOB HM2   H10  H 0 1 N N N 35.061 29.887 21.425 -0.140 0.791  -3.840 HM2   UOB 33 
UOB "HM'" H11  H 0 1 N N N 32.710 34.949 17.061 3.696  1.789  0.755  "HM'" UOB 34 
UOB H5T   H12  H 0 1 N N N 32.185 33.491 16.154 3.485  3.137  -0.388 H5T   UOB 35 
UOB H5U   H13  H 0 1 N N N 31.234 34.060 17.568 3.696  3.467  1.348  H5U   UOB 36 
UOB H3    H14  H 0 1 N N N 29.420 28.443 15.768 4.523  -2.118 1.653  H3    UOB 37 
UOB H1    H15  H 0 1 N N N 33.175 31.445 21.213 -0.398 3.532  1.280  H1    UOB 38 
UOB H2    H16  H 0 1 N N N 39.515 32.483 19.822 -3.673 -1.924 2.034  H2    UOB 39 
UOB OP3   OP3  O 0 1 N Y N 37.396 33.336 17.440 -4.858 -2.269 -0.549 OP3   UOB 40 
UOB HOP3  HOP3 H 0 0 N Y N 37.050 34.213 17.559 -5.721 -2.604 -0.270 HOP3  UOB 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UOB O2    C2    DOUB N N 1  
UOB N3    C2    SING N N 2  
UOB N3    C4    SING N N 3  
UOB O4    C4    DOUB N N 4  
UOB C2    N1    SING N N 5  
UOB C4    C5    SING N N 6  
UOB N1    "C1'" SING N N 7  
UOB N1    C6    SING N N 8  
UOB C5    C6    DOUB N N 9  
UOB "C1'" "O4'" SING N N 10 
UOB "C1'" "C2'" SING N N 11 
UOB "CM'" "O2'" SING N N 12 
UOB "O4'" "C4'" SING N N 13 
UOB "O2'" "C2'" SING N N 14 
UOB "C2'" "C3'" SING N N 15 
UOB P     "O5'" SING N N 16 
UOB P     OP1   SING N N 17 
UOB P     OP2   DOUB N N 18 
UOB "O5'" "C5'" SING N N 19 
UOB "C4'" "C3'" SING N N 20 
UOB "C4'" "C5'" SING N N 21 
UOB "C4'" OM    SING N N 22 
UOB "C3'" "O3'" SING N N 23 
UOB OM    CM    SING N N 24 
UOB "C1'" "H1'" SING N N 25 
UOB "C2'" "H2'" SING N N 26 
UOB "C3'" "H3'" SING N N 27 
UOB C5    H5    SING N N 28 
UOB "C5'" "H5'" SING N N 29 
UOB "C5'" H5S   SING N N 30 
UOB C6    H6    SING N N 31 
UOB CM    HM3   SING N N 32 
UOB CM    HM1   SING N N 33 
UOB CM    HM2   SING N N 34 
UOB "CM'" "HM'" SING N N 35 
UOB "CM'" H5T   SING N N 36 
UOB "CM'" H5U   SING N N 37 
UOB N3    H3    SING N N 38 
UOB "O3'" H1    SING N N 39 
UOB OP1   H2    SING N N 40 
UOB P     OP3   SING N N 41 
UOB OP3   HOP3  SING N N 42 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UOB SMILES           ACDLabs              12.01 "C1(OC(C(C1OC)O)(COP(O)(=O)O)OC)N2C(NC(C=C2)=O)=O"                                                                                                                
UOB InChI            InChI                1.03  "InChI=1S/C11H17N2O10P/c1-20-7-8(15)11(21-2,5-22-24(17,18)19)23-9(7)13-4-3-6(14)12-10(13)16/h3-4,7-9,15H,5H2,1-2H3,(H,12,14,16)(H2,17,18,19)/t7-,8+,9-,11+/m1/s1" 
UOB InChIKey         InChI                1.03  PQPFDVLUCHRYPP-LOKLDPHHSA-N                                                                                                                                       
UOB SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]1[C@H](O)[C@@](CO[P](O)(O)=O)(OC)O[C@H]1N2C=CC(=O)NC2=O"                                                                                                 
UOB SMILES           CACTVS               3.385 "CO[CH]1[CH](O)[C](CO[P](O)(O)=O)(OC)O[CH]1N2C=CC(=O)NC2=O"                                                                                                       
UOB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CO[C@@H]1[C@@H]([C@@](O[C@H]1N2C=CC(=O)NC2=O)(COP(=O)(O)O)OC)O"                                                                                                  
UOB SMILES           "OpenEye OEToolkits" 2.0.6 "COC1C(C(OC1N2C=CC(=O)NC2=O)(COP(=O)(O)O)OC)O"                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
UOB "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3-hydroxy-2,4-dimethoxytetrahydrofuran-2-yl]methyl dihydrogen phosphate (non-preferred name)" 
UOB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-2,4-dimethoxy-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"                    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UOB "Create component" 2018-04-06 RCSB 
UOB "Modify name"      2018-04-12 RCSB 
UOB "Initial release"  2018-08-29 RCSB 
# 
