data_PWB
#

_chem_comp.id                                   PWB
_chem_comp.name                                 "3',3'-c-[2'FdAMP-2'FdAM(PS)]"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H24 F2 N10 O9 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3-oxidanyl-3,12-bis(oxidanylidene)-12-sulfanyl-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine"
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2020-04-29
_chem_comp.pdbx_modified_date                   2021-05-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       680.475
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    PWB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YWA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
PWB  N     N1   N  0  1  Y  N  N  -15.583  -2.308  33.785   -9.943  -0.691  -0.234  N     PWB   1  
PWB  C     C1   C  0  1  Y  N  N  -15.228  -1.744  34.921   -9.174  -1.333   0.627  C     PWB   2  
PWB  O     O1   O  0  1  N  N  N  -17.549   5.019  30.468    0.734   2.149  -1.374  O     PWB   3  
PWB  C1    C2   C  0  1  Y  N  N  -16.174   0.300  34.399   -7.338  -0.072   0.082  C1    PWB   4  
PWB  C10   C3   C  0  1  Y  N  N  -14.729   2.489  25.949    9.101   1.153   0.537  C10   PWB   5  
PWB  C11   C4   C  0  1  Y  N  N  -13.734   3.255  27.872    7.276  -0.157   0.074  C11   PWB   6  
PWB  C12   C5   C  0  1  Y  N  N  -13.452   1.889  28.262    8.070  -0.925  -0.802  C12   PWB   7  
PWB  C13   C6   C  0  1  Y  N  N  -13.906   0.844  27.332    9.412  -0.575  -0.954  C13   PWB   8  
PWB  C14   C7   C  0  1  Y  N  N  -12.706   3.218  29.741    6.071  -1.766  -0.832  C14   PWB   9  
PWB  C15   C8   C  0  1  N  N  R  -14.769   5.904  30.624    2.649   0.514   0.052  C15   PWB  10  
PWB  C16   C9   C  0  1  N  N  R  -14.758   5.849  29.128    4.145   0.872   0.009  C16   PWB  11  
PWB  C17   C10  C  0  1  N  N  R  -13.335   5.487  28.825    4.847  -0.258   0.778  C17   PWB  12  
PWB  C18   C11  C  0  1  N  N  R  -13.423   6.516  30.874    2.580  -0.826   0.799  C18   PWB  13  
PWB  C19   C12  C  0  1  N  N  N  -12.898   6.289  32.272    1.717  -1.815   0.012  C19   PWB  14  
PWB  C2    C13  C  0  1  Y  N  N  -16.582  -0.236  33.122   -8.122   0.639  -0.849  C2    PWB  15  
PWB  C3    C14  C  0  1  Y  N  N  -16.237  -1.638  32.852   -9.466   0.289  -0.983  C3    PWB  16  
PWB  C4    C15  C  0  1  Y  N  N  -17.206   1.795  33.288   -6.116   1.462  -0.927  C4    PWB  17  
PWB  C5    C16  C  0  1  N  N  R  -14.828   3.988  34.612   -2.719  -0.759   0.101  C5    PWB  18  
PWB  C6    C17  C  0  1  N  N  R  -14.897   2.797  35.515   -4.214  -1.124   0.106  C6    PWB  19  
PWB  C7    C18  C  0  1  N  N  R  -16.359   2.476  35.533   -4.911   0.062   0.791  C7    PWB  20  
PWB  C8    C19  C  0  1  N  N  R  -16.084   4.696  35.020   -2.642   0.619   0.776  C8    PWB  21  
PWB  C9    C20  C  0  1  N  N  N  -16.610   5.635  33.968   -1.771   1.558  -0.060  C9    PWB  22  
PWB  F1    F1   F  0  1  N  N  N  -15.053   7.038  28.583    4.369   2.102   0.638  F1    PWB  23  
PWB  F2    F2   F  0  1  N  N  N  -14.474   3.088  36.755   -4.426  -2.299   0.834  F2    PWB  24  
PWB  N1    N2   N  0  1  Y  N  N  -15.507  -0.494  35.237   -7.901  -1.040   0.791  N1    PWB  25  
PWB  N10   N3   N  1  1  N  N  N  -13.691  -0.574  27.603   10.247  -1.302  -1.808  N10   PWB  26  
PWB  N2    N4   N  0  1  Y  N  N  -16.588   1.542  34.426   -6.080   0.471   0.008  N2    PWB  27  
PWB  N3    N5   N  0  1  Y  N  N  -17.210   0.738  32.493   -7.313   1.559  -1.428  N3    PWB  28  
PWB  N4    N6   N  0  1  Y  N  N  -14.514   1.223  26.220    9.878   0.458  -0.273  N4    PWB  29  
PWB  N5    N7   N  0  1  Y  N  N  -14.370   3.484  26.729    7.829   0.863   0.715  N5    PWB  30  
PWB  N6    N8   N  0  1  Y  N  N  -13.252   4.015  28.822    6.022  -0.713   0.032  N6    PWB  31  
PWB  N7    N9   N  0  1  Y  N  N  -12.820   1.937  29.416    7.271  -1.890  -1.319  N7    PWB  32  
PWB  O1    O2   O  0  1  N  N  N  -17.021   3.682  35.329   -3.971   1.136   0.859  O1    PWB  33  
PWB  O10   O3   O  0  1  N  N  N  -13.638   4.741  34.778   -1.971  -1.720   0.848  O10   PWB  34  
PWB  O2    O4   O  0  1  N  N  N  -16.866   4.983  32.756   -0.664   2.006   0.724  O2    PWB  35  
PWB  O22   O5   O  0  1  N  N  N  -12.028   3.100  33.969   -0.797  -2.431  -1.270  O22   PWB  36  
PWB  O4    O6   O  0  1  N  N  N  -11.160   5.292  34.534   -1.117  -4.185   0.516  O4    PWB  37  
PWB  O5    O7   O  0  1  N  N  N  -12.576   6.013  29.857    3.912  -1.330   0.913  O5    PWB  38  
PWB  O7    O8   O  0  1  N  N  N  -15.872   6.621  31.121    1.919   1.516   0.763  O7    PWB  39  
PWB  O8    O9   O  0  1  N  N  N  -12.585   4.958  32.538    0.609  -2.225   0.816  O8    PWB  40  
PWB  P     P1   P  0  1  N  N  N  -17.178   5.862  31.523    0.760   2.403   0.084  P     PWB  41  
PWB  P1    P2   P  0  1  N  N  N  -12.307   4.502  33.996   -0.819  -2.636   0.195  P1    PWB  42  
PWB  S1    S1   S  0  1  N  N  N  -18.655   7.124  32.078    1.144   4.458   0.437  S1    PWB  43  
PWB  N11   N10  N  1  1  N  N  N  -16.625  -2.297  31.600  -10.291   0.959  -1.891  N11   PWB  44  
PWB  H     H1   H  0  1  N  N  N  -14.677  -2.339  35.635   -9.606  -2.127   1.219  H     PWB  45  
PWB  H10   H2   H  0  1  N  N  N  -15.234   2.729  25.025    9.525   1.987   1.077  H10   PWB  46  
PWB  H14   H3   H  0  1  N  N  N  -12.228   3.573  30.642    5.235  -2.404  -1.076  H14   PWB  47  
PWB  H15   H4   H  0  1  N  N  N  -14.773   4.877  31.019    2.256   0.405  -0.959  H15   PWB  48  
PWB  H16   H5   H  0  1  N  N  N  -15.429   5.051  28.778    4.498   0.905  -1.022  H16   PWB  49  
PWB  H17   H6   H  0  1  N  N  N  -13.039   5.894  27.847    5.148   0.097   1.764  H17   PWB  50  
PWB  H18   H7   H  0  1  N  N  N  -13.525   7.603  30.736    2.156  -0.675   1.792  H18   PWB  51  
PWB  H192  H8   H  0  0  N  N  N  -11.989   6.894  32.405    1.351  -1.335  -0.895  H192  PWB  52  
PWB  H191  H9   H  0  0  N  N  N  -13.665   6.617  32.989    2.315  -2.687  -0.254  H191  PWB  53  
PWB  H4    H10  H  0  1  N  N  N  -17.653   2.746  33.037   -5.275   2.077  -1.210  H4    PWB  54  
PWB  H5    H11  H  0  1  N  N  N  -14.925   3.655  33.568   -2.346  -0.702  -0.921  H5    PWB  55  
PWB  H6    H12  H  0  1  N  N  N  -14.338   1.960  35.071   -4.580  -1.240  -0.914  H6    PWB  56  
PWB  H7    H13  H  0  1  N  N  N  -16.635   2.015  36.493   -5.221  -0.222   1.797  H7    PWB  57  
PWB  H8    H14  H  0  1  N  N  N  -15.870   5.282  35.926   -2.222   0.518   1.776  H8    PWB  58  
PWB  H91   H15  H  0  1  N  N  N  -15.865   6.425  33.794   -1.403   1.027  -0.939  H91   PWB  59  
PWB  H92   H16  H  0  1  N  N  N  -17.545   6.086  34.332   -2.363   2.417  -0.377  H92   PWB  60  
PWB  HN5   H17  H  0  1  N  N  N  -14.062  -1.118  26.850   10.215  -0.899  -2.733  HN5   PWB  61  
PWB  HN4   H18  H  0  1  N  N  N  -12.711  -0.752  27.691   11.194  -1.271  -1.460  HN4   PWB  62  
PWB  H1    H19  H  0  1  N  N  N  -10.449   4.704  34.761   -0.462  -4.795   0.152  H1    PWB  63  
PWB  HS1   H20  H  0  1  N  N  N  -19.611   6.798  31.260    0.114   5.068  -0.176  HS1   PWB  64  
PWB  HN3   H21  H  0  1  N  N  N  -16.319  -3.249  31.615  -10.259   0.492  -2.784  HN3   PWB  65  
PWB  HN1   H22  H  0  1  N  N  N  -17.620  -2.269  31.503  -11.240   0.960  -1.546  HN1   PWB  66  
PWB  HN2   HN2  H  0  1  N  N  N  -16.201  -1.823  30.828   -9.972   1.911  -1.997  HN2   PWB  67  
PWB  HN6   HN6  H  0  1  N  N  N  -14.152  -0.824  28.454    9.935  -2.260  -1.849  HN6   PWB  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
PWB  C10  N4    DOUB  Y  N   1  
PWB  C10  N5    SING  Y  N   2  
PWB  N4   C13   SING  Y  N   3  
PWB  N5   C11   DOUB  Y  N   4  
PWB  C13  N10   SING  N  N   5  
PWB  C13  C12   DOUB  Y  N   6  
PWB  C11  C12   SING  Y  N   7  
PWB  C11  N6    SING  Y  N   8  
PWB  C12  N7    SING  Y  N   9  
PWB  F1   C16   SING  N  N  10  
PWB  N6   C17   SING  N  N  11  
PWB  N6   C14   SING  Y  N  12  
PWB  C17  C16   SING  N  N  13  
PWB  C17  O5    SING  N  N  14  
PWB  C16  C15   SING  N  N  15  
PWB  N7   C14   DOUB  Y  N  16  
PWB  O5   C18   SING  N  N  17  
PWB  O    P     DOUB  N  N  18  
PWB  C15  C18   SING  N  N  19  
PWB  C15  O7    SING  N  N  20  
PWB  C18  C19   SING  N  N  21  
PWB  O7   P     SING  N  N  22  
PWB  P    S1    SING  N  N  23  
PWB  P    O2    SING  N  N  24  
PWB  N11  C3    SING  N  N  25  
PWB  C19  O8    SING  N  N  26  
PWB  N3   C2    SING  Y  N  27  
PWB  N3   C4    DOUB  Y  N  28  
PWB  O8   P1    SING  N  N  29  
PWB  O2   C9    SING  N  N  30  
PWB  C3   C2    DOUB  Y  N  31  
PWB  C3   N     SING  Y  N  32  
PWB  C2   C1    SING  Y  N  33  
PWB  C4   N2    SING  Y  N  34  
PWB  N    C     DOUB  Y  N  35  
PWB  C9   C8    SING  N  N  36  
PWB  O22  P1    DOUB  N  N  37  
PWB  P1   O4    SING  N  N  38  
PWB  P1   O10   SING  N  N  39  
PWB  C1   N2    SING  Y  N  40  
PWB  C1   N1    DOUB  Y  N  41  
PWB  N2   C7    SING  N  N  42  
PWB  C5   O10   SING  N  N  43  
PWB  C5   C8    SING  N  N  44  
PWB  C5   C6    SING  N  N  45  
PWB  C    N1    SING  Y  N  46  
PWB  C8   O1    SING  N  N  47  
PWB  O1   C7    SING  N  N  48  
PWB  C6   C7    SING  N  N  49  
PWB  C6   F2    SING  N  N  50  
PWB  C    H     SING  N  N  51  
PWB  C10  H10   SING  N  N  52  
PWB  C14  H14   SING  N  N  53  
PWB  C15  H15   SING  N  N  54  
PWB  C16  H16   SING  N  N  55  
PWB  C17  H17   SING  N  N  56  
PWB  C18  H18   SING  N  N  57  
PWB  C19  H192  SING  N  N  58  
PWB  C19  H191  SING  N  N  59  
PWB  C4   H4    SING  N  N  60  
PWB  C5   H5    SING  N  N  61  
PWB  C6   H6    SING  N  N  62  
PWB  C7   H7    SING  N  N  63  
PWB  C8   H8    SING  N  N  64  
PWB  C9   H91   SING  N  N  65  
PWB  C9   H92   SING  N  N  66  
PWB  N10  HN5   SING  N  N  67  
PWB  N10  HN4   SING  N  N  68  
PWB  O4   H1    SING  N  N  69  
PWB  S1   HS1   SING  N  N  70  
PWB  N11  HN3   SING  N  N  71  
PWB  N11  HN1   SING  N  N  72  
PWB  HN2  N11   SING  N  N  73  
PWB  N10  HN6   SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
PWB  InChI             InChI                 1.03   "InChI=1S/C20H22F2N10O9P2S/c21-9-13-8(39-19(9)31-5-29-11-15(23)25-3-27-17(11)31)2-37-43(35,44)41-14-7(1-36-42(33,34)40-13)38-20(10(14)22)32-6-30-12-16(24)26-4-28-18(12)32/h3-10,13-14,19-20H,1-2H2,(H,33,34)(H,35,44)(H2,23,25,27)(H2,24,26,28)/p+2/t7-,8-,9-,10-,13-,14-,19-,20-,43-/m1/s1"  
PWB  InChIKey          InChI                 1.03   ACFLUKTZBKNITE-VIORMFSVSA-P  
PWB  SMILES_CANONICAL  CACTVS                3.385  "[NH3+]c1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](S)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c([NH3+])ncnc67"  
PWB  SMILES            CACTVS                3.385  "[NH3+]c1ncnc2n(cnc12)[CH]3O[CH]4CO[P](S)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c([NH3+])ncnc67"  
PWB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)S)O[C@H]([C@@H]5F)n6cnc7c6ncnc7[NH3+])O)F)[NH3+]"  
PWB  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)S)OC(C5F)n6cnc7c6ncnc7[NH3+])O)F)[NH3+]"  
#
_pdbx_chem_comp_identifier.comp_id          PWB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "[9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-azaniumylpurin-9-yl)-9,18-bis(fluoranyl)-3-oxidanyl-3,12-bis(oxidanylidene)-12-sulfanyl-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-yl]azanium"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     PWB
_pdbx_chem_comp_synonyms.name        "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},12~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3-oxidanyl-3,12-bis(oxidanylidene)-12-sulfanyl-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
PWB  "Create component"  2020-04-29  PDBE  
PWB  "Modify charge"     2020-04-30  PDBE  
PWB  "Modify synonyms"   2021-03-13  RCSB  
PWB  "Initial release"   2021-05-12  RCSB  
##
