data_OJB
#

_chem_comp.id                                   OJB
_chem_comp.name                                 "5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-~{N}-[3-(propanoylamino)propyl]pentanamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H35 N3 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-13
_chem_comp.pdbx_modified_date                   2021-01-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       433.497
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OJB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6YAU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OJB  C1   C1   C  0  1  N  N  N  -2.924  28.083  15.708   -2.980   0.105   0.189  C1   OJB   1  
OJB  C12  C2   C  0  1  N  N  N  -2.583  29.324  14.914   -1.729  -0.591  -0.278  C12  OJB   2  
OJB  C13  C3   C  0  1  N  N  N  -3.602  29.659  13.822   -0.503   0.122   0.296  C13  OJB   3  
OJB  C14  C4   C  0  1  N  N  N  -3.011  30.420  12.635    0.768  -0.585  -0.178  C14  OJB   4  
OJB  C15  C5   C  0  1  N  N  N  -2.014  29.622  11.824    1.993   0.129   0.396  C15  OJB   5  
OJB  C19  C6   C  0  1  N  N  R  -0.074  26.899   9.318    5.695   2.068   0.333  C19  OJB   6  
OJB  C20  C7   C  0  1  N  N  R  -0.709  25.547   8.990    6.942   1.292  -0.102  C20  OJB   7  
OJB  C21  C8   C  0  1  N  N  R  -1.479  25.022  10.205    6.878  -0.126   0.473  C21  OJB   8  
OJB  C22  C9   C  0  1  N  N  R  -2.434  26.083  10.756    5.583  -0.797   0.004  C22  OJB   9  
OJB  N2   N1   N  0  1  N  N  N  -1.941  27.193  15.844   -4.189  -0.352  -0.194  N2   OJB  10  
OJB  O3   O1   O  0  1  N  N  N  -4.043  27.918  16.193   -2.901   1.074   0.914  O3   OJB  11  
OJB  O16  O2   O  0  1  N  N  N  -2.633  28.414  11.374    3.181  -0.532  -0.048  O16  OJB  12  
OJB  C17  C10  C  0  1  N  N  R  -1.732  27.431  10.944    4.389   0.059   0.435  C17  OJB  13  
OJB  O18  O3   O  0  1  N  N  N  -1.096  27.828   9.738    4.527   1.374  -0.108  O18  OJB  14  
OJB  C23  C11  C  0  1  N  N  N   0.665  27.512   8.145    5.722   3.466  -0.287  C23  OJB  15  
OJB  O24  O4   O  0  1  N  N  N   1.371  28.686   8.522    4.620   4.229   0.210  O24  OJB  16  
OJB  O25  O5   O  0  1  N  N  N  -1.586  25.691   7.878    6.991   1.227  -1.529  O25  OJB  17  
OJB  O26  O6   O  0  1  N  N  N  -2.244  23.887   9.824    8.001  -0.880   0.012  O26  OJB  18  
OJB  N27  N2   N  0  1  N  N  N  -3.031  25.626  11.999    5.475  -2.127   0.608  N27  OJB  19  
OJB  C28  C12  C  0  1  N  N  N  -4.305  25.863  12.346    4.744  -3.085   0.003  C28  OJB  20  
OJB  C29  C13  C  0  1  N  N  N  -4.753  25.250  13.643    4.633  -4.453   0.624  C29  OJB  21  
OJB  O30  O7   O  0  1  N  N  N  -5.073  26.510  11.629    4.176  -2.845  -1.041  O30  OJB  22  
OJB  H1   H1   H  0  1  N  N  N  -1.603  29.173  14.439   -1.740  -1.626   0.064  H1   OJB  23  
OJB  H2   H2   H  0  1  N  N  N  -2.527  30.175  15.608   -1.685  -0.569  -1.367  H2   OJB  24  
OJB  H3   H3   H  0  1  N  N  N  -4.397  30.275  14.267   -0.492   1.157  -0.046  H3   OJB  25  
OJB  H4   H4   H  0  1  N  N  N  -4.033  28.718  13.450   -0.546   0.100   1.385  H4   OJB  26  
OJB  H5   H5   H  0  1  N  N  N  -2.505  31.318  13.018    0.757  -1.620   0.164  H5   OJB  27  
OJB  H6   H6   H  0  1  N  N  N  -3.836  30.719  11.971    0.811  -0.563  -1.267  H6   OJB  28  
OJB  H7   H7   H  0  1  N  N  N  -1.143  29.378  12.449    2.004   1.164   0.053  H7   OJB  29  
OJB  H8   H8   H  0  1  N  N  N  -1.688  30.214  10.956    1.950   0.107   1.484  H8   OJB  30  
OJB  H9   H9   H  0  1  N  N  N   0.643  26.751  10.139    5.680   2.151   1.419  H9   OJB  31  
OJB  H10  H10  H  0  1  N  N  N   0.092  24.833   8.748    7.833   1.797   0.271  H10  OJB  32  
OJB  H11  H11  H  0  1  N  N  N  -0.759  24.751  10.991    6.891  -0.079   1.562  H11  OJB  33  
OJB  H12  H12  H  0  1  N  N  N  -3.235  26.226  10.015    5.593  -0.889  -1.082  H12  OJB  34  
OJB  H13  H13  H  0  1  N  N  N  -1.212  27.403  16.496   -4.253  -1.127  -0.774  H13  OJB  35  
OJB  H15  H15  H  0  1  N  N  N  -0.962  27.292  11.717    4.357   0.116   1.523  H15  OJB  36  
OJB  H16  H16  H  0  1  N  N  N  -0.062  27.770   7.361    6.656   3.963  -0.023  H16  OJB  37  
OJB  H17  H17  H  0  1  N  N  N   1.382  26.776   7.752    5.648   3.385  -1.371  H17  OJB  38  
OJB  H18  H18  H  0  1  N  N  N   1.821  29.042   7.765    4.575   5.128  -0.142  H18  OJB  39  
OJB  H19  H19  H  0  1  N  N  N  -1.980  24.851   7.674    7.028   2.092  -1.961  H19  OJB  40  
OJB  H20  H20  H  0  1  N  N  N  -2.722  23.560  10.577    8.856  -0.508   0.267  H20  OJB  41  
OJB  H21  H21  H  0  1  N  N  N  -2.459  25.105  12.633    5.929  -2.319   1.443  H21  OJB  42  
OJB  H22  H22  H  0  1  N  N  N  -5.817  25.477  13.808    5.205  -4.479   1.551  H22  OJB  43  
OJB  H23  H23  H  0  1  N  N  N  -4.613  24.160  13.601    3.586  -4.671   0.837  H23  OJB  44  
OJB  H24  H24  H  0  1  N  N  N  -4.157  25.664  14.469    5.026  -5.199  -0.067  H24  OJB  45  
OJB  C2   C14  C  0  1  N  N  N       ?       ?       ?   -5.406   0.322   0.265  C2   OJB  46  
OJB  C3   C15  C  0  1  N  N  N       ?       ?       ?   -6.632  -0.391  -0.310  C3   OJB  47  
OJB  C4   C16  C  0  1  N  N  N       ?       ?       ?   -7.903   0.313   0.169  C4   OJB  48  
OJB  N1   N3   N  0  1  N  N  N       ?       ?       ?   -9.076  -0.370  -0.381  N1   OJB  49  
OJB  C5   C17  C  0  1  N  N  N       ?       ?       ?  -10.314   0.077  -0.091  C5   OJB  50  
OJB  C6   C18  C  0  1  N  N  N       ?       ?       ?  -11.521  -0.625  -0.658  C6   OJB  51  
OJB  C7   C19  C  0  1  N  N  N       ?       ?       ?  -12.792   0.079  -0.178  C7   OJB  52  
OJB  O1   O8   O  0  1  N  N  N       ?       ?       ?  -10.457   1.045   0.625  O1   OJB  53  
OJB  H14  H14  H  0  1  N  N  N       ?       ?       ?   -5.448   0.295   1.354  H14  OJB  54  
OJB  H25  H25  H  0  1  N  N  N       ?       ?       ?   -5.397   1.358  -0.073  H25  OJB  55  
OJB  H26  H26  H  0  1  N  N  N       ?       ?       ?   -6.590  -0.364  -1.399  H26  OJB  56  
OJB  H27  H27  H  0  1  N  N  N       ?       ?       ?   -6.641  -1.427   0.028  H27  OJB  57  
OJB  H28  H28  H  0  1  N  N  N       ?       ?       ?   -7.944   0.286   1.258  H28  OJB  58  
OJB  H29  H29  H  0  1  N  N  N       ?       ?       ?   -7.894   1.349  -0.168  H29  OJB  59  
OJB  H30  H30  H  0  1  N  N  N       ?       ?       ?   -8.962  -1.145  -0.954  H30  OJB  60  
OJB  H31  H31  H  0  1  N  N  N       ?       ?       ?  -11.479  -0.598  -1.746  H31  OJB  61  
OJB  H32  H32  H  0  1  N  N  N       ?       ?       ?  -11.530  -1.661  -0.320  H32  OJB  62  
OJB  H33  H33  H  0  1  N  N  N       ?       ?       ?  -12.834   0.052   0.911  H33  OJB  63  
OJB  H34  H34  H  0  1  N  N  N       ?       ?       ?  -12.783   1.115  -0.516  H34  OJB  64  
OJB  H35  H35  H  0  1  N  N  N       ?       ?       ?  -13.665  -0.430  -0.588  H35  OJB  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OJB  O25  C20  SING  N  N   1  
OJB  C23  O24  SING  N  N   2  
OJB  C23  C19  SING  N  N   3  
OJB  C20  C19  SING  N  N   4  
OJB  C20  C21  SING  N  N   5  
OJB  C19  O18  SING  N  N   6  
OJB  O18  C17  SING  N  N   7  
OJB  O26  C21  SING  N  N   8  
OJB  C21  C22  SING  N  N   9  
OJB  C22  C17  SING  N  N  10  
OJB  C22  N27  SING  N  N  11  
OJB  C17  O16  SING  N  N  12  
OJB  O16  C15  SING  N  N  13  
OJB  O30  C28  DOUB  N  N  14  
OJB  C15  C14  SING  N  N  15  
OJB  N27  C28  SING  N  N  16  
OJB  C28  C29  SING  N  N  17  
OJB  C14  C13  SING  N  N  18  
OJB  C13  C12  SING  N  N  19  
OJB  C12  C1   SING  N  N  20  
OJB  C1   N2   SING  N  N  21  
OJB  C1   O3   DOUB  N  N  22  
OJB  C12  H1   SING  N  N  23  
OJB  C12  H2   SING  N  N  24  
OJB  C13  H3   SING  N  N  25  
OJB  C13  H4   SING  N  N  26  
OJB  C14  H5   SING  N  N  27  
OJB  C14  H6   SING  N  N  28  
OJB  C15  H7   SING  N  N  29  
OJB  C15  H8   SING  N  N  30  
OJB  C19  H9   SING  N  N  31  
OJB  C20  H10  SING  N  N  32  
OJB  C21  H11  SING  N  N  33  
OJB  C22  H12  SING  N  N  34  
OJB  N2   H13  SING  N  N  35  
OJB  C17  H15  SING  N  N  36  
OJB  C23  H16  SING  N  N  37  
OJB  C23  H17  SING  N  N  38  
OJB  O24  H18  SING  N  N  39  
OJB  O25  H19  SING  N  N  40  
OJB  O26  H20  SING  N  N  41  
OJB  N27  H21  SING  N  N  42  
OJB  C29  H22  SING  N  N  43  
OJB  C29  H23  SING  N  N  44  
OJB  C29  H24  SING  N  N  45  
OJB  N2   C2   SING  N  N  46  
OJB  C2   C3   SING  N  N  47  
OJB  C3   C4   SING  N  N  48  
OJB  C4   N1   SING  N  N  49  
OJB  N1   C5   SING  N  N  50  
OJB  C5   C6   SING  N  N  51  
OJB  C6   C7   SING  N  N  52  
OJB  C5   O1   DOUB  N  N  53  
OJB  C2   H14  SING  N  N  54  
OJB  C2   H25  SING  N  N  55  
OJB  C3   H26  SING  N  N  56  
OJB  C3   H27  SING  N  N  57  
OJB  C4   H28  SING  N  N  58  
OJB  C4   H29  SING  N  N  59  
OJB  N1   H30  SING  N  N  60  
OJB  C6   H31  SING  N  N  61  
OJB  C6   H32  SING  N  N  62  
OJB  C7   H33  SING  N  N  63  
OJB  C7   H34  SING  N  N  64  
OJB  C7   H35  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OJB  InChI             InChI                 1.03   "InChI=1S/C19H35N3O8/c1-3-14(25)20-8-6-9-21-15(26)7-4-5-10-29-19-16(22-12(2)24)18(28)17(27)13(11-23)30-19/h13,16-19,23,27-28H,3-11H2,1-2H3,(H,20,25)(H,21,26)(H,22,24)/t13-,16-,17+,18-,19-/m1/s1"  
OJB  InChIKey          InChI                 1.03   IKUNNZGUTWUXRA-LQDZTQBFSA-N  
OJB  SMILES_CANONICAL  CACTVS                3.385  "CCC(=O)NCCCNC(=O)CCCCO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1NC(C)=O"  
OJB  SMILES            CACTVS                3.385  "CCC(=O)NCCCNC(=O)CCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O"  
OJB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCC(=O)NCCCNC(=O)CCCCO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C"  
OJB  SMILES            "OpenEye OEToolkits"  2.0.7  "CCC(=O)NCCCNC(=O)CCCCOC1C(C(C(C(O1)CO)O)O)NC(=O)C"  
#
_pdbx_chem_comp_identifier.comp_id          OJB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "5-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-~{N}-[3-(propanoylamino)propyl]pentanamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OJB  "Create component"  2020-03-13  PDBE  
OJB  "Initial release"   2021-01-13  RCSB  
##
