data_M9B
#

_chem_comp.id                                   M9B
_chem_comp.name                                 "1-alpha-hydroxy-vitamin D3"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H44 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-08
_chem_comp.pdbx_modified_date                   2020-10-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       400.637
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M9B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6T0H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M9B  C4   C1   C  0  1  N  N  N  -13.234   5.626  -13.766   5.799   0.111  -0.482  C4   M9B   1  
M9B  C14  C2   C  0  1  N  N  S   -9.564   9.607  -10.349  -0.043   1.808   1.174  C14  M9B   2  
M9B  C5   C3   C  0  1  N  N  N  -12.519   6.940  -13.546   4.446   0.045   0.198  C5   M9B   3  
M9B  C6   C4   C  0  1  N  N  N  -12.426   7.788  -14.737   4.195  -1.120   1.070  C6   M9B   4  
M9B  C11  C5   C  0  1  N  N  N   -8.404   7.001  -10.794   0.384   3.247  -1.365  C11  M9B   5  
M9B  C7   C6   C  0  1  N  N  N  -12.018   7.225  -12.310   3.516   1.005   0.015  C7   M9B   6  
M9B  C8   C7   C  0  1  N  N  N  -11.311   8.439  -11.843   2.220   0.907   0.690  C8   M9B   7  
M9B  C9   C8   C  0  1  N  N  N  -10.335   8.409  -10.889   1.301   1.855   0.510  C9   M9B   8  
M9B  C10  C9   C  0  1  N  N  N   -9.858   7.097  -10.320   1.540   3.063  -0.384  C10  M9B   9  
M9B  C12  C10  C  0  1  N  N  N   -7.550   8.211  -10.379  -0.972   3.178  -0.665  C12  M9B  10  
M9B  C13  C11  C  0  1  N  N  R   -8.145   9.511  -10.905  -1.081   1.834   0.016  C13  M9B  11  
M9B  C3   C12  C  0  1  N  N  R  -14.561   5.836  -14.506   6.102  -1.263  -1.089  C3   M9B  12  
M9B  O    O1   O  0  1  N  N  N  -15.516   6.484  -13.648   7.397  -1.241  -1.692  O    M9B  13  
M9B  C1   C13  C  0  1  N  N  S  -13.674   7.984  -15.576   4.643  -2.472   0.550  C1   M9B  14  
M9B  C15  C14  C  0  1  N  N  N  -10.020  11.035  -10.627  -0.410   0.507   1.892  C15  M9B  15  
M9B  C16  C15  C  0  1  N  N  N   -8.712  11.839  -10.495  -1.964   0.552   1.910  C16  M9B  16  
M9B  C17  C16  C  0  1  N  N  R   -7.571  10.822  -10.333  -2.389   1.477   0.704  C17  M9B  17  
M9B  C18  C17  C  0  1  N  N  N   -8.182   9.588  -12.430  -0.733   0.730  -0.985  C18  M9B  18  
M9B  C19  C18  C  0  1  N  N  N  -11.280   8.328  -15.109   3.604  -0.990   2.258  C19  M9B  19  
M9B  C2   C19  C  0  1  N  N  N  -14.352   6.631  -15.802   6.068  -2.331   0.005  C2   M9B  20  
M9B  C20  C20  C  0  1  N  N  R   -6.171  11.207  -10.906  -3.308   0.724  -0.261  C20  M9B  21  
M9B  C21  C21  C  0  1  N  N  N   -5.109  11.267   -9.799  -3.726   1.656  -1.400  C21  M9B  22  
M9B  C22  C22  C  0  1  N  N  N   -6.080  12.478  -11.778  -4.553   0.246   0.489  C22  M9B  23  
M9B  C23  C23  C  0  1  N  N  N   -4.890  12.447  -12.770  -5.412  -0.612  -0.442  C23  M9B  24  
M9B  C24  C24  C  0  1  N  N  N   -4.678  13.734  -13.580  -6.657  -1.089   0.308  C24  M9B  25  
M9B  C25  C25  C  0  1  N  N  N   -3.681  13.606  -14.748  -7.516  -1.948  -0.623  C25  M9B  26  
M9B  C26  C26  C  0  1  N  N  N   -4.169  12.627  -15.798  -6.752  -3.221  -0.992  C26  M9B  27  
M9B  C27  C27  C  0  1  N  N  N   -3.328  14.915  -15.495  -8.819  -2.322   0.085  C27  M9B  28  
M9B  O1   O2   O  0  1  N  N  N  -13.344   8.614  -16.836   3.767  -2.899  -0.495  O1   M9B  29  
M9B  H1   H1   H  0  1  N  N  N  -13.437   5.160  -12.791   5.778   0.864  -1.270  H1   M9B  30  
M9B  H2   H2   H  0  1  N  N  N  -12.591   4.963  -14.363   6.566   0.367   0.249  H2   M9B  31  
M9B  H3   H3   H  0  1  N  N  N   -9.497   9.490   -9.257  -0.176   2.664   1.835  H3   M9B  32  
M9B  H4   H4   H  0  1  N  N  N   -8.398   6.929  -11.892   0.481   4.215  -1.857  H4   M9B  33  
M9B  H5   H5   H  0  1  N  N  N   -7.956   6.093  -10.365   0.435   2.461  -2.118  H5   M9B  34  
M9B  H6   H6   H  0  1  N  N  N  -12.157   6.455  -11.565   3.727   1.847  -0.628  H6   M9B  35  
M9B  H7   H7   H  0  1  N  N  N  -11.579   9.391  -12.277   2.009   0.065   1.334  H7   M9B  36  
M9B  H8   H8   H  0  1  N  N  N   -9.913   7.103   -9.221   2.465   2.918  -0.943  H8   M9B  37  
M9B  H9   H9   H  0  1  N  N  N  -10.454   6.260  -10.712   1.632   3.956   0.235  H9   M9B  38  
M9B  H10  H10  H  0  1  N  N  N   -6.535   8.090  -10.786  -1.043   3.968   0.083  H10  M9B  39  
M9B  H11  H11  H  0  1  N  N  N   -7.502   8.257   -9.281  -1.772   3.289  -1.397  H11  M9B  40  
M9B  H12  H12  H  0  1  N  N  N  -14.948   4.844  -14.783   5.353  -1.498  -1.846  H12  M9B  41  
M9B  H13  H13  H  0  1  N  N  N  -15.627   5.973  -12.855   7.490  -0.590  -2.401  H13  M9B  42  
M9B  H14  H14  H  0  1  N  N  N  -14.369   8.628  -15.018   4.630  -3.200   1.360  H14  M9B  43  
M9B  H15  H15  H  0  1  N  N  N  -10.765  11.365   -9.888  -0.055  -0.360   1.334  H15  M9B  44  
M9B  H16  H16  H  0  1  N  N  N  -10.442  11.127  -11.639  -0.012   0.505   2.906  H16  M9B  45  
M9B  H17  H17  H  0  1  N  N  N   -8.550  12.447  -11.397  -2.369  -0.451   1.771  H17  M9B  46  
M9B  H18  H18  H  0  1  N  N  N   -8.760  12.496   -9.614  -2.316   0.970   2.853  H18  M9B  47  
M9B  H19  H19  H  0  1  N  N  N   -7.435  10.665   -9.253  -2.882   2.377   1.072  H19  M9B  48  
M9B  H20  H20  H  0  1  N  N  N   -8.621  10.548  -12.739   0.317   0.812  -1.266  H20  M9B  49  
M9B  H21  H21  H  0  1  N  N  N   -7.159   9.509  -12.826  -0.912  -0.243  -0.529  H21  M9B  50  
M9B  H22  H22  H  0  1  N  N  N   -8.792   8.762  -12.824  -1.356   0.836  -1.873  H22  M9B  51  
M9B  H23  H23  H  0  1  N  N  N  -10.385   8.148  -14.531   3.296  -0.014   2.603  H23  M9B  52  
M9B  H24  H24  H  0  1  N  N  N  -11.237   8.950  -15.991   3.434  -1.860   2.875  H24  M9B  53  
M9B  H25  H25  H  0  1  N  N  N  -15.333   6.805  -16.268   6.393  -3.285  -0.410  H25  M9B  54  
M9B  H26  H26  H  0  1  N  N  N  -13.725   6.035  -16.481   6.739  -2.042   0.814  H26  M9B  55  
M9B  H27  H27  H  0  1  N  N  N   -5.878  10.373  -11.560  -2.779  -0.136  -0.671  H27  M9B  56  
M9B  H28  H28  H  0  1  N  N  N   -5.174  10.361   -9.178  -2.846   1.944  -1.975  H28  M9B  57  
M9B  H29  H29  H  0  1  N  N  N   -4.109  11.329  -10.253  -4.433   1.142  -2.050  H29  M9B  58  
M9B  H30  H30  H  0  1  N  N  N   -5.282  12.154   -9.172  -4.196   2.548  -0.986  H30  M9B  59  
M9B  H31  H31  H  0  1  N  N  N   -5.963  13.349  -11.117  -4.252  -0.345   1.354  H31  M9B  60  
M9B  H32  H32  H  0  1  N  N  N   -7.013  12.577  -12.352  -5.130   1.109   0.823  H32  M9B  61  
M9B  H33  H33  H  0  1  N  N  N   -5.060  11.623  -13.479  -5.713  -0.020  -1.306  H33  M9B  62  
M9B  H34  H34  H  0  1  N  N  N   -3.973  12.252  -12.195  -4.835  -1.474  -0.775  H34  M9B  63  
M9B  H35  H35  H  0  1  N  N  N   -4.306  14.511  -12.896  -6.356  -1.681   1.173  H35  M9B  64  
M9B  H36  H36  H  0  1  N  N  N   -5.650  14.043  -13.992  -7.234  -0.227   0.642  H36  M9B  65  
M9B  H37  H37  H  0  1  N  N  N   -2.744  13.207  -14.334  -7.743  -1.385  -1.529  H37  M9B  66  
M9B  H38  H38  H  0  1  N  N  N   -4.435  11.674  -15.317  -5.823  -2.954  -1.497  H38  M9B  67  
M9B  H39  H39  H  0  1  N  N  N   -5.054  13.042  -16.303  -6.524  -3.783  -0.086  H39  M9B  68  
M9B  H40  H40  H  0  1  N  N  N   -3.373  12.455  -16.537  -7.363  -3.832  -1.656  H40  M9B  69  
M9B  H41  H41  H  0  1  N  N  N   -2.966  15.663  -14.774  -9.363  -1.415   0.348  H41  M9B  70  
M9B  H42  H42  H  0  1  N  N  N   -2.543  14.713  -16.238  -9.431  -2.933  -0.578  H42  M9B  71  
M9B  H43  H43  H  0  1  N  N  N   -4.224  15.300  -16.004  -8.592  -2.884   0.991  H43  M9B  72  
M9B  H44  H44  H  0  1  N  N  N  -12.925   9.451  -16.672   2.845  -2.993  -0.222  H44  M9B  73  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M9B  O1   C1   SING  N  N   1  
M9B  C2   C1   SING  N  N   2  
M9B  C2   C3   SING  N  N   3  
M9B  C26  C25  SING  N  N   4  
M9B  C1   C6   SING  N  N   5  
M9B  C27  C25  SING  N  N   6  
M9B  C19  C6   DOUB  N  N   7  
M9B  C25  C24  SING  N  N   8  
M9B  C6   C5   SING  N  N   9  
M9B  C3   C4   SING  N  N  10  
M9B  C3   O    SING  N  N  11  
M9B  C4   C5   SING  N  N  12  
M9B  C24  C23  SING  N  N  13  
M9B  C5   C7   DOUB  N  Z  14  
M9B  C23  C22  SING  N  N  15  
M9B  C18  C13  SING  N  N  16  
M9B  C7   C8   SING  N  N  17  
M9B  C8   C9   DOUB  N  E  18  
M9B  C22  C20  SING  N  N  19  
M9B  C20  C17  SING  N  N  20  
M9B  C20  C21  SING  N  N  21  
M9B  C13  C12  SING  N  N  22  
M9B  C13  C14  SING  N  N  23  
M9B  C13  C17  SING  N  N  24  
M9B  C9   C14  SING  N  N  25  
M9B  C9   C10  SING  N  N  26  
M9B  C11  C12  SING  N  N  27  
M9B  C11  C10  SING  N  N  28  
M9B  C15  C16  SING  N  N  29  
M9B  C15  C14  SING  N  N  30  
M9B  C16  C17  SING  N  N  31  
M9B  C4   H1   SING  N  N  32  
M9B  C4   H2   SING  N  N  33  
M9B  C14  H3   SING  N  N  34  
M9B  C11  H4   SING  N  N  35  
M9B  C11  H5   SING  N  N  36  
M9B  C7   H6   SING  N  N  37  
M9B  C8   H7   SING  N  N  38  
M9B  C10  H8   SING  N  N  39  
M9B  C10  H9   SING  N  N  40  
M9B  C12  H10  SING  N  N  41  
M9B  C12  H11  SING  N  N  42  
M9B  C3   H12  SING  N  N  43  
M9B  O    H13  SING  N  N  44  
M9B  C1   H14  SING  N  N  45  
M9B  C15  H15  SING  N  N  46  
M9B  C15  H16  SING  N  N  47  
M9B  C16  H17  SING  N  N  48  
M9B  C16  H18  SING  N  N  49  
M9B  C17  H19  SING  N  N  50  
M9B  C18  H20  SING  N  N  51  
M9B  C18  H21  SING  N  N  52  
M9B  C18  H22  SING  N  N  53  
M9B  C19  H23  SING  N  N  54  
M9B  C19  H24  SING  N  N  55  
M9B  C2   H25  SING  N  N  56  
M9B  C2   H26  SING  N  N  57  
M9B  C20  H27  SING  N  N  58  
M9B  C21  H28  SING  N  N  59  
M9B  C21  H29  SING  N  N  60  
M9B  C21  H30  SING  N  N  61  
M9B  C22  H31  SING  N  N  62  
M9B  C22  H32  SING  N  N  63  
M9B  C23  H33  SING  N  N  64  
M9B  C23  H34  SING  N  N  65  
M9B  C24  H35  SING  N  N  66  
M9B  C24  H36  SING  N  N  67  
M9B  C25  H37  SING  N  N  68  
M9B  C26  H38  SING  N  N  69  
M9B  C26  H39  SING  N  N  70  
M9B  C26  H40  SING  N  N  71  
M9B  C27  H41  SING  N  N  72  
M9B  C27  H42  SING  N  N  73  
M9B  C27  H43  SING  N  N  74  
M9B  O1   H44  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M9B  InChI             InChI                 1.03   "InChI=1S/C27H44O2/c1-18(2)8-6-9-19(3)24-13-14-25-21(10-7-15-27(24,25)5)11-12-22-16-23(28)17-26(29)20(22)4/h11-12,18-19,23-26,28-29H,4,6-10,13-17H2,1-3,5H3/b21-11+,22-12-/t19-,23-,24-,25+,26+,27-/m1/s1"  
M9B  InChIKey          InChI                 1.03   OFHCOWSQAMBJIW-AVJTYSNKSA-N  
M9B  SMILES_CANONICAL  CACTVS                3.385  "CC(C)CCC[C@@H](C)[C@H]1CC[C@H]2/C(CCC[C@]12C)=C/C=C3/C[C@@H](O)C[C@H](O)C3=C"  
M9B  SMILES            CACTVS                3.385  "CC(C)CCC[CH](C)[CH]1CC[CH]2C(CCC[C]12C)=CC=C3C[CH](O)C[CH](O)C3=C"  
M9B  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](CCCC(C)C)[C@H]1CC[C@@H]\2[C@@]1(CCC/C2=C\C=C/3\C[C@H](C[C@@H](C3=C)O)O)C"  
M9B  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C)CCCC(C)C1CCC2C1(CCCC2=CC=C3CC(CC(C3=C)O)O)C"  
#
_pdbx_chem_comp_identifier.comp_id          M9B
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(1~{R},3~{a}~{S},7~{a}~{R})-7~{a}-methyl-1-[(2~{R})-6-methylheptan-2-yl]-2,3,3~{a},5,6,7-hexahydro-1~{H}-inden-4-ylidene]ethylidene]-4-methylidene-cyclohexane-1,3-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M9B  "Create component"  2019-10-08  EBI   
M9B  "Initial release"   2020-10-14  RCSB  
##
