data_LHB
# 
_chem_comp.id                                    LHB 
_chem_comp.name                                  "5-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]methyl]-4-azanyl-1-(methoxymethyl)pyrimidin-2-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H23 N9 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-13 
_chem_comp.pdbx_modified_date                    2017-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        433.422 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     LHB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LV2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
LHB C1  C1  C 0 1 Y N N 1.733  15.303 11.668 -6.226 -2.147 -0.400 C1  LHB 1  
LHB C2  C2  C 0 1 Y N N 0.854  14.561 12.478 -4.952 -1.665 -0.054 C2  LHB 2  
LHB C3  C3  C 0 1 Y N N -0.307 14.093 11.881 -4.570 -0.399 -0.530 C3  LHB 3  
LHB N1  N1  N 0 1 Y N N -0.676 14.266 10.607 -5.420 0.291  -1.284 N1  LHB 4  
LHB C4  C4  C 0 1 Y N N 0.235  14.976 9.936  -6.604 -0.201 -1.582 C4  LHB 5  
LHB N2  N2  N 0 1 Y N N 1.385  15.493 10.376 -7.005 -1.387 -1.163 N2  LHB 6  
LHB N3  N3  N 0 1 Y N N -0.991 13.425 12.865 -3.304 -0.182 -0.051 N3  LHB 7  
LHB C5  C5  C 0 1 Y N N -0.207 13.513 13.987 -2.950 -1.276 0.680  C5  LHB 8  
LHB N4  N4  N 0 1 Y N N 0.906  14.184 13.811 -3.918 -2.145 0.677  N4  LHB 9  
LHB C6  C6  C 0 1 N N R -2.302 12.802 12.751 -2.482 1.009  -0.283 C6  LHB 10 
LHB O1  O1  O 0 1 N N N -3.182 13.463 13.627 -1.090 0.724  -0.023 O1  LHB 11 
LHB C7  C7  C 0 1 N N R -4.320 12.601 13.801 -0.444 1.983  0.229  C7  LHB 12 
LHB C8  C8  C 0 1 N N S -3.795 11.166 13.677 -1.516 2.947  0.773  C8  LHB 13 
LHB C9  C9  C 0 1 N N R -2.354 11.331 13.159 -2.822 2.116  0.747  C9  LHB 14 
LHB O2  O2  O 0 1 N N N -2.110 10.499 12.030 -3.923 2.910  0.297  O2  LHB 15 
LHB O3  O3  O 0 1 N N N -4.601 10.435 12.761 -1.633 4.094  -0.072 O3  LHB 16 
LHB C10 C10 C 0 1 N N N -4.981 12.894 15.134 0.665  1.800  1.266  C10 LHB 17 
LHB N5  N5  N 0 1 N N N -4.037 12.807 16.253 1.731  0.963  0.700  N5  LHB 18 
LHB C11 C11 C 0 1 N N N -4.404 13.695 17.364 2.817  0.765  1.670  C11 LHB 19 
LHB C12 C12 C 0 1 N N N -5.439 13.039 18.366 3.889  -0.097 1.055  C12 LHB 20 
LHB N6  N6  N 0 1 N N N 2.879  15.833 12.105 -6.657 -3.387 0.039  N6  LHB 21 
LHB C13 C13 C 0 1 N N N -6.844 12.786 18.103 3.784  -1.502 1.088  C13 LHB 22 
LHB N7  N7  N 0 1 N N N -7.637 12.186 18.995 4.739  -2.244 0.541  N7  LHB 23 
LHB C14 C14 C 0 1 N N N -7.158 11.794 20.202 5.794  -1.675 -0.038 C14 LHB 24 
LHB N8  N8  N 0 1 N N N -5.822 12.049 20.505 5.923  -0.336 -0.085 N8  LHB 25 
LHB C15 C15 C 0 1 N N N -5.008 12.650 19.583 4.966  0.467  0.458  C15 LHB 26 
LHB N9  N9  N 0 1 N N N -7.391 13.195 16.954 2.699  -2.101 1.684  N9  LHB 27 
LHB C16 C16 C 0 1 N N N -5.282 11.717 21.829 7.096  0.261  -0.729 C16 LHB 28 
LHB O4  O4  O 0 1 N N N -5.558 10.395 22.198 6.964  0.158  -2.148 O4  LHB 29 
LHB C17 C17 C 0 1 N N N -5.694 10.214 23.596 6.116  1.152  -2.727 C17 LHB 30 
LHB O5  O5  O 0 1 N N N -7.852 11.198 21.026 6.658  -2.378 -0.534 O5  LHB 31 
LHB H1  H1  H 0 1 N N N 0.011  15.157 8.895  -7.269 0.384  -2.201 H1  LHB 32 
LHB H2  H2  H 0 1 N N N -0.482 13.069 14.932 -2.005 -1.403 1.188  H2  LHB 33 
LHB H3  H3  H 0 1 N N N -2.661 12.890 11.715 -2.618 1.375  -1.300 H3  LHB 34 
LHB H4  H4  H 0 1 N N N -5.050 12.778 12.997 -0.025 2.377  -0.697 H4  LHB 35 
LHB H5  H5  H 0 1 N N N -3.780 10.688 14.668 -1.276 3.249  1.793  H5  LHB 36 
LHB H6  H6  H 0 1 N N N -1.638 11.137 13.971 -3.029 1.686  1.727  H6  LHB 37 
LHB H7  H7  H 0 1 N N N -2.145 9.587  12.295 -4.173 3.616  0.908  H7  LHB 38 
LHB H8  H8  H 0 1 N N N -5.481 10.351 13.110 -2.294 4.735  0.224  H8  LHB 39 
LHB H10 H9  H 0 1 N N N -5.402 13.910 15.105 1.074  2.774  1.537  H10 LHB 40 
LHB H9  H10 H 0 1 N N N -5.790 12.166 15.296 0.257  1.318  2.154  H9  LHB 41 
LHB H11 H11 H 0 1 N N N -4.020 11.865 16.587 1.365  0.078  0.381  H11 LHB 42 
LHB H12 H13 H 0 1 N N N -3.492 13.953 17.922 3.240  1.732  1.944  H12 LHB 43 
LHB H13 H14 H 0 1 N N N -4.851 14.610 16.948 2.423  0.275  2.561  H13 LHB 44 
LHB H14 H15 H 0 1 N N N 3.329  16.320 11.356 -6.078 -3.934 0.592  H14 LHB 45 
LHB H15 H16 H 0 1 N N N 2.688  16.472 12.850 -7.539 -3.708 -0.207 H15 LHB 46 
LHB H16 H17 H 0 1 N N N -3.973 12.820 19.842 5.067  1.542  0.417  H16 LHB 47 
LHB H18 H18 H 0 1 N N N -8.365 13.048 16.784 2.003  -1.556 2.083  H18 LHB 48 
LHB H17 H19 H 0 1 N N N -6.826 13.648 16.264 2.629  -3.069 1.705  H17 LHB 49 
LHB H20 H20 H 0 1 N N N -4.191 11.859 21.812 7.170  1.311  -0.446 H20 LHB 50 
LHB H19 H21 H 0 1 N N N -5.729 12.393 22.573 7.994  -0.266 -0.408 H19 LHB 51 
LHB H22 H22 H 0 1 N N N -5.909 9.157  23.810 5.115  1.066  -2.304 H22 LHB 52 
LHB H23 H23 H 0 1 N N N -4.759 10.507 24.096 6.517  2.142  -2.512 H23 LHB 53 
LHB H21 H24 H 0 1 N N N -6.520 10.838 23.968 6.068  1.006  -3.806 H21 LHB 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
LHB C4  N2  DOUB Y N 1  
LHB C4  N1  SING Y N 2  
LHB N2  C1  SING Y N 3  
LHB N1  C3  DOUB Y N 4  
LHB C1  N6  SING N N 5  
LHB C1  C2  DOUB Y N 6  
LHB C3  C2  SING Y N 7  
LHB C3  N3  SING Y N 8  
LHB O2  C9  SING N N 9  
LHB C2  N4  SING Y N 10 
LHB C6  N3  SING N N 11 
LHB C6  C9  SING N N 12 
LHB C6  O1  SING N N 13 
LHB O3  C8  SING N N 14 
LHB N3  C5  SING Y N 15 
LHB C9  C8  SING N N 16 
LHB O1  C7  SING N N 17 
LHB C8  C7  SING N N 18 
LHB C7  C10 SING N N 19 
LHB N4  C5  DOUB Y N 20 
LHB C10 N5  SING N N 21 
LHB N5  C11 SING N N 22 
LHB N9  C13 SING N N 23 
LHB C11 C12 SING N N 24 
LHB C13 C12 SING N N 25 
LHB C13 N7  DOUB N N 26 
LHB C12 C15 DOUB N N 27 
LHB N7  C14 SING N N 28 
LHB C15 N8  SING N N 29 
LHB C14 N8  SING N N 30 
LHB C14 O5  DOUB N N 31 
LHB N8  C16 SING N N 32 
LHB C16 O4  SING N N 33 
LHB O4  C17 SING N N 34 
LHB C4  H1  SING N N 35 
LHB C5  H2  SING N N 36 
LHB C6  H3  SING N N 37 
LHB C7  H4  SING N N 38 
LHB C8  H5  SING N N 39 
LHB C9  H6  SING N N 40 
LHB O2  H7  SING N N 41 
LHB O3  H8  SING N N 42 
LHB C10 H10 SING N N 43 
LHB C10 H9  SING N N 44 
LHB N5  H11 SING N N 45 
LHB C11 H12 SING N N 46 
LHB C11 H13 SING N N 47 
LHB N6  H14 SING N N 48 
LHB N6  H15 SING N N 49 
LHB C15 H16 SING N N 50 
LHB N9  H18 SING N N 51 
LHB N9  H17 SING N N 52 
LHB C16 H20 SING N N 53 
LHB C16 H19 SING N N 54 
LHB C17 H22 SING N N 55 
LHB C17 H23 SING N N 56 
LHB C17 H21 SING N N 57 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
LHB InChI            InChI                1.03  "InChI=1S/C17H23N9O5/c1-30-7-25-4-8(13(18)24-17(25)29)2-20-3-9-11(27)12(28)16(31-9)26-6-23-10-14(19)21-5-22-15(10)26/h4-6,9,11-12,16,20,27-28H,2-3,7H2,1H3,(H2,18,24,29)(H2,19,21,22)/t9-,11-,12-,16-/m1/s1" 
LHB InChIKey         InChI                1.03  XNIWXZNBHJGVPA-UBEDBUPSSA-N                                                                                                                                                                                  
LHB SMILES_CANONICAL CACTVS               3.385 "COCN1C=C(CNC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N"                                                                                                                                      
LHB SMILES           CACTVS               3.385 "COCN1C=C(CNC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N"                                                                                                                                           
LHB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)CNC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                     
LHB SMILES           "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)CNCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
LHB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "5-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylamino]methyl]-4-azanyl-1-(methoxymethyl)pyrimidin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
LHB "Create component" 2016-09-13 EBI  
LHB "Initial release"  2017-09-20 RCSB 
# 
