data_K9B
#

_chem_comp.id                                   K9B
_chem_comp.name                                 "(4~{R})-4-[2-[4-(2-azanylethylamino)cyclohexyl]ethanoylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H29 B N3 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   -1
_chem_comp.pdbx_initial_date                    2019-05-07
_chem_comp.pdbx_modified_date                   2019-10-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       406.261
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K9B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RMF
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K9B  C15   C1   C   0  1  Y  N  N  30.359  1.340  18.523    5.819  -2.332  -1.419  C15   K9B   1  
K9B  C16   C2   C   0  1  Y  N  N  29.955  0.998  17.196    4.562  -1.957  -1.861  C16   K9B   2  
K9B  C19   C3   C   0  1  N  N  N  30.764  3.563  12.444   -1.856   1.436  -1.235  C19   K9B   3  
K9B  C20   C4   C   0  1  N  N  N  30.653  4.537  11.250   -3.099   1.192  -0.376  C20   K9B   4  
K9B  C21   C5   C   0  1  N  N  N  29.759  5.705  11.687   -4.266   2.016  -0.924  C21   K9B   5  
K9B  C22   C6   C   0  1  N  N  N  29.687  6.736  10.625   -5.509   1.772  -0.066  C22   K9B   6  
K9B  C23   C7   C   0  1  N  N  N  31.020  7.456  10.534   -5.872   0.286  -0.103  C23   K9B   7  
K9B  B05   B1   B  -1  1  N  N  N  26.759  3.426  15.506    2.667   1.167   0.057  B05   K9B   8  
K9B  C02   C8   C   0  1  N  N  N  29.496  2.925  12.794   -0.677   0.723  -0.624  C02   K9B   9  
K9B  C04   C9   C   0  1  N  N  R  27.707  2.462  14.497    1.680   0.103  -0.620  C04   K9B  10  
K9B  C09   C10  C   0  1  Y  N  N  27.906  2.273  17.429    4.336  -0.429  -0.028  C09   K9B  11  
K9B  C10   C11  C   0  1  Y  N  N  28.273  2.634  18.759    5.618  -0.803   0.418  C10   K9B  12  
K9B  C11   C12  C   0  1  N  N  N  27.358  3.533  19.561    6.183  -0.191   1.634  C11   K9B  13  
K9B  C14   C13  C   0  1  Y  N  N  29.483  2.181  19.303    6.350  -1.762  -0.283  C14   K9B  14  
K9B  C17   C14  C   0  1  Y  N  N  28.704  1.468  16.655    3.824  -1.009  -1.173  C17   K9B  15  
K9B  C18   C15  C   0  1  N  N  N  28.165  1.180  15.256    2.466  -0.631  -1.712  C18   K9B  16  
K9B  C28   C16  C   0  1  N  N  N  32.063  6.410   9.980   -4.704  -0.537   0.445  C28   K9B  17  
K9B  C29   C17  C   0  1  N  N  N  32.076  5.050  10.756   -3.461  -0.294  -0.413  C29   K9B  18  
K9B  N03   N1   N   0  1  N  N  N  28.927  3.092  14.078    0.533   0.796  -1.213  N03   K9B  19  
K9B  O01   O1   O   0  1  N  N  N  28.930  2.276  11.913   -0.817   0.083   0.396  O01   K9B  20  
K9B  O06   O2   O   0  1  N  N  N  25.419  3.646  15.065    1.982   1.936   0.956  O06   K9B  21  
K9B  O07   O3   O   0  1  N  N  N  27.410  4.688  15.717    3.203   1.965  -0.915  O07   K9B  22  
K9B  O08   O4   O   0  1  N  N  N  26.706  2.719  16.867    3.662   0.494   0.696  O08   K9B  23  
K9B  O12   O5   O   0  1  N  N  N  27.820  4.378  20.435    7.410  -0.549   2.062  O12   K9B  24  
K9B  O13   O6   O   0  1  N  N  N  26.068  3.562  19.403    5.542   0.637   2.251  O13   K9B  25  
K9B  H151  H1   H   0  0  N  N  N  31.292  0.980  18.930    6.382  -3.076  -1.963  H151  K9B  26  
K9B  H161  H2   H   0  0  N  N  N  30.597  0.377  16.588    4.153  -2.409  -2.753  H161  K9B  27  
K9B  H191  H3   H   0  0  N  N  N  31.490  2.778  12.187   -2.029   1.055  -2.241  H191  K9B  28  
K9B  H192  H4   H   0  0  N  N  N  31.125  4.124  13.319   -1.650   2.505  -1.281  H192  K9B  29  
K9B  H201  H5   H   0  0  N  N  N  30.169  4.014  10.412   -2.895   1.491   0.652  H201  K9B  30  
K9B  H211  H6   H   0  0  N  N  N  30.175  6.156  12.600   -4.008   3.074  -0.898  H211  K9B  31  
K9B  H212  H7   H   0  0  N  N  N  28.747  5.327  11.893   -4.470   1.717  -1.952  H212  K9B  32  
K9B  H222  H8   H   0  0  N  N  N  28.895  7.459  10.868   -5.305   2.071   0.962  H222  K9B  33  
K9B  H221  H9   H   0  0  N  N  N  29.462  6.256   9.661   -6.341   2.359  -0.457  H221  K9B  34  
K9B  H1    H10  H   0  1  N  N  N  31.001  8.408   9.983   -6.076  -0.013  -1.131  H1    K9B  35  
K9B  H141  H13  H   0  0  N  N  N  29.760  2.462  20.308    7.330  -2.056   0.063  H141  K9B  36  
K9B  H182  H14  H   0  0  N  N  N  27.304  0.501  15.346    1.926  -1.531  -2.007  H182  K9B  37  
K9B  H181  H15  H   0  0  N  N  N  28.957  0.691  14.670    2.585   0.023  -2.577  H181  K9B  38  
K9B  H282  H16  H   0  0  N  N  N  31.821  6.205   8.927   -4.500  -0.238   1.473  H282  K9B  39  
K9B  H281  H17  H   0  0  N  N  N  33.067  6.855  10.045   -4.962  -1.596   0.419  H281  K9B  40  
K9B  H291  H18  H   0  0  N  N  N  32.502  4.284  10.092   -3.665  -0.593  -1.441  H291  K9B  41  
K9B  H292  H19  H   0  0  N  N  N  32.720  5.169  11.640   -2.629  -0.880  -0.023  H292  K9B  42  
K9B  H031  H20  H   0  0  N  N  N  29.401  3.682  14.731    0.645   1.308  -2.030  H031  K9B  43  
K9B  H061  H21  H   0  0  N  N  N  24.965  4.196  15.693    2.526   2.599   1.401  H061  K9B  44  
K9B  H071  H22  H   0  0  N  N  N  26.875  5.230  16.285    3.825   2.626  -0.582  H071  K9B  45  
K9B  H2    H23  H   0  1  N  N  N  27.101  4.875  20.806    7.738  -0.120   2.864  H2    K9B  46  
K9B  N1    N2   N   0  1  N  N  N       ?      ?       ?   -7.065   0.052   0.721  N1    K9B  47  
K9B  C2    C18  C   0  1  N  N  N       ?      ?       ?   -7.785  -1.148   0.276  C2    K9B  48  
K9B  C3    C19  C   0  1  N  N  N       ?      ?       ?   -9.019  -1.358   1.156  C3    K9B  49  
K9B  N2    N3   N   0  1  N  N  N       ?      ?       ?   -9.739  -2.559   0.711  N2    K9B  50  
K9B  H3    H33  H   0  1  N  N  N       ?      ?       ?   -6.823  -0.013   1.699  H3    K9B  51  
K9B  H5    H32  H   0  1  N  N  N       ?      ?       ?  -10.559  -2.719   1.278  H5    K9B  52  
K9B  H4    H24  H   0  1  N  N  N       ?      ?       ?   -9.981  -2.494  -0.266  H4    K9B  53  
K9B  H6    H25  H   0  1  N  N  N       ?      ?       ?   -8.096  -1.022  -0.761  H6    K9B  54  
K9B  H7    H26  H   0  1  N  N  N       ?      ?       ?   -7.130  -2.016   0.356  H7    K9B  55  
K9B  H8    H27  H   0  1  N  N  N       ?      ?       ?   -8.708  -1.484   2.194  H8    K9B  56  
K9B  H9    H28  H   0  1  N  N  N       ?      ?       ?   -9.674  -0.491   1.076  H9    K9B  57  
K9B  H10   H29  H   0  1  N  N  N  27.092  2.174  13.631    1.335  -0.610   0.129  H10   K9B  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K9B  C28  C23   SING  N  N   1  
K9B  C28  C29   SING  N  N   2  
K9B  C23  C22   SING  N  N   3  
K9B  C22  C21   SING  N  N   4  
K9B  C29  C20   SING  N  N   5  
K9B  C20  C21   SING  N  N   6  
K9B  C20  C19   SING  N  N   7  
K9B  O01  C02   DOUB  N  N   8  
K9B  C19  C02   SING  N  N   9  
K9B  C02  N03   SING  N  N  10  
K9B  N03  C04   SING  N  N  11  
K9B  C04  C18   SING  N  N  12  
K9B  C04  B05   SING  N  N  13  
K9B  O06  B05   SING  N  N  14  
K9B  C18  C17   SING  N  N  15  
K9B  B05  O07   SING  N  N  16  
K9B  B05  O08   SING  N  N  17  
K9B  C17  C16   DOUB  Y  N  18  
K9B  C17  C09   SING  Y  N  19  
K9B  O08  C09   SING  N  N  20  
K9B  C16  C15   SING  Y  N  21  
K9B  C09  C10   DOUB  Y  N  22  
K9B  C15  C14   DOUB  Y  N  23  
K9B  C10  C14   SING  Y  N  24  
K9B  C10  C11   SING  N  N  25  
K9B  O13  C11   DOUB  N  N  26  
K9B  C11  O12   SING  N  N  27  
K9B  C15  H151  SING  N  N  28  
K9B  C16  H161  SING  N  N  29  
K9B  C19  H191  SING  N  N  30  
K9B  C19  H192  SING  N  N  31  
K9B  C20  H201  SING  N  N  32  
K9B  C21  H211  SING  N  N  33  
K9B  C21  H212  SING  N  N  34  
K9B  C22  H222  SING  N  N  35  
K9B  C22  H221  SING  N  N  36  
K9B  C23  H1    SING  N  N  37  
K9B  C14  H141  SING  N  N  38  
K9B  C18  H182  SING  N  N  39  
K9B  C18  H181  SING  N  N  40  
K9B  C28  H282  SING  N  N  41  
K9B  C28  H281  SING  N  N  42  
K9B  C29  H291  SING  N  N  43  
K9B  C29  H292  SING  N  N  44  
K9B  N03  H031  SING  N  N  45  
K9B  O06  H061  SING  N  N  46  
K9B  O07  H071  SING  N  N  47  
K9B  O12  H2    SING  N  N  48  
K9B  C23  N1    SING  N  N  49  
K9B  N1   C2    SING  N  N  50  
K9B  C2   C3    SING  N  N  51  
K9B  C3   N2    SING  N  N  52  
K9B  N1   H3    SING  N  N  53  
K9B  N2   H5    SING  N  N  54  
K9B  N2   H4    SING  N  N  55  
K9B  C2   H6    SING  N  N  56  
K9B  C2   H7    SING  N  N  57  
K9B  C3   H8    SING  N  N  58  
K9B  C3   H9    SING  N  N  59  
K9B  C04  H10   SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K9B  InChI             InChI                 1.03   "InChI=1S/C19H29BN3O6/c21-8-9-22-14-6-4-12(5-7-14)10-17(24)23-16-11-13-2-1-3-15(19(25)26)18(13)29-20(16,27)28/h1-3,12,14,16,22,27-28H,4-11,21H2,(H,23,24)(H,25,26)/q-1/t12-,14-,16-/m0/s1"  
K9B  InChIKey          InChI                 1.03   BZPCNLIYJBPHQK-NOLJZWGESA-N  
K9B  SMILES_CANONICAL  CACTVS                3.385  "NCCN[C@H]1CC[C@@H](CC1)CC(=O)N[C@H]2Cc3cccc(C(O)=O)c3O[B-]2(O)O"  
K9B  SMILES            CACTVS                3.385  "NCCN[CH]1CC[CH](CC1)CC(=O)N[CH]2Cc3cccc(C(O)=O)c3O[B-]2(O)O"  
K9B  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[B-]1([C@H](Cc2cccc(c2O1)C(=O)O)NC(=O)CC3CCC(CC3)NCCN)(O)O"  
K9B  SMILES            "OpenEye OEToolkits"  2.0.7  "[B-]1(C(Cc2cccc(c2O1)C(=O)O)NC(=O)CC3CCC(CC3)NCCN)(O)O"  
#
_pdbx_chem_comp_identifier.comp_id          K9B
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(4~{R})-4-[2-[4-(2-azanylethylamino)cyclohexyl]ethanoylamino]-3,3-bis(oxidanyl)-2-oxa-3-boranuidabicyclo[4.4.0]deca-1(10),6,8-triene-10-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K9B  "Create component"    2019-05-07  PDBE  
K9B  "Initial release"     2019-09-11  RCSB  
K9B  "Other modification"  2019-10-18  PDBE  
##
