data_JDB
# 
_chem_comp.id                                    JDB 
_chem_comp.name                                  "5-[2-(7-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H16 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2013-02-27 
_chem_comp.pdbx_modified_date                    2014-02-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        340.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JDB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4JDB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JDB OAJ OAJ O 0 1 N N N -5.212 -17.366 14.608 -4.315 -2.881 0.348  OAJ JDB 1  
JDB CAI CAI C 0 1 N N N -6.441 -17.215 14.480 -3.344 -1.947 0.319  CAI JDB 2  
JDB OAK OAK O 0 1 N N N -7.200 -18.201 14.444 -2.179 -2.280 0.394  OAK JDB 3  
JDB C4  C4  C 0 1 N N N -6.971 -15.869 14.462 -3.699 -0.513 0.196  C4  JDB 4  
JDB N3  N3  N 0 1 N N N -6.431 -15.035 15.509 -5.008 -0.136 -0.014 N3  JDB 5  
JDB C2  C2  C 0 1 N N N -6.763 -13.695 15.609 -5.349 1.158  -0.128 C2  JDB 6  
JDB O2  O2  O 0 1 N N N -6.251 -12.992 16.486 -6.516 1.449  -0.313 O2  JDB 7  
JDB N1  N1  N 0 1 N N N -7.630 -13.214 14.656 -4.436 2.141  -0.044 N1  JDB 8  
JDB C6  C6  C 0 1 N N N -8.120 -13.958 13.549 -3.135 1.849  0.161  C6  JDB 9  
JDB O6  O6  O 0 1 N N N -8.887 -13.398 12.731 -2.306 2.736  0.238  O6  JDB 10 
JDB C5  C5  C 0 1 N N N -7.783 -15.338 13.489 -2.737 0.442  0.294  C5  JDB 11 
JDB CAL CAL C 0 1 N N N -8.239 -16.131 12.422 -1.296 0.065  0.524  CAL JDB 12 
JDB CAM CAM C 0 1 N N N -7.599 -15.643 11.085 -0.590 -0.094 -0.824 CAM JDB 13 
JDB CAN CAN C 0 1 Y N N -6.304 -16.251 10.992 0.851  -0.471 -0.594 CAN JDB 14 
JDB CAS CAS C 0 1 Y N N -6.046 -17.411 10.238 1.788  0.508  -0.466 CAS JDB 15 
JDB CAR CAR C 0 1 Y N N -4.767 -18.015 10.197 3.132  0.161  -0.252 CAR JDB 16 
JDB CAT CAT C 0 1 Y N N -4.514 -19.184 9.445  4.126  1.144  -0.115 CAT JDB 17 
JDB CAW CAW C 0 1 Y N N -3.221 -19.755 9.445  5.423  0.768  0.094  CAW JDB 18 
JDB OAX OAX O 0 1 N N N -2.944 -20.859 8.702  6.383  1.720  0.227  OAX JDB 19 
JDB CAY CAY C 0 1 N N N -3.650 -20.876 7.421  7.721  1.267  0.443  CAY JDB 20 
JDB CAV CAV C 0 1 Y N N -2.169 -19.221 10.211 5.775  -0.583 0.172  CAV JDB 21 
JDB CAU CAU C 0 1 Y N N -2.424 -18.093 10.926 4.837  -1.558 0.043  CAU JDB 22 
JDB CAQ CAQ C 0 1 Y N N -3.717 -17.511 10.931 3.492  -1.209 -0.171 CAQ JDB 23 
JDB CAP CAP C 0 1 Y N N -3.933 -16.349 11.668 2.497  -2.191 -0.308 CAP JDB 24 
JDB CAO CAO C 0 1 Y N N -5.204 -15.716 11.695 1.204  -1.816 -0.510 CAO JDB 25 
JDB H1  H1  H 0 1 N N N -5.011 -18.293 14.665 -4.035 -3.803 0.429  H1  JDB 26 
JDB H2  H2  H 0 1 N N N -7.939 -12.268 14.749 -4.714 3.066  -0.131 H2  JDB 27 
JDB H4  H4  H 0 1 N N N -9.334 -16.053 12.352 -0.804 0.847  1.102  H4  JDB 28 
JDB H5  H5  H 0 1 N N N -7.957 -17.179 12.600 -1.250 -0.876 1.072  H5  JDB 29 
JDB H6  H6  H 0 1 N N N -7.502 -14.547 11.091 -1.082 -0.876 -1.402 H6  JDB 30 
JDB H7  H7  H 0 1 N N N -8.223 -15.951 10.233 -0.637 0.847  -1.372 H7  JDB 31 
JDB H8  H8  H 0 1 N N N -6.851 -17.855 9.672  1.499  1.547  -0.530 H8  JDB 32 
JDB H9  H9  H 0 1 N N N -5.307 -19.640 8.871  3.867  2.190  -0.174 H9  JDB 33 
JDB H10 H10 H 0 1 N N N -3.386 -21.790 6.868  7.762  0.679  1.360  H10 JDB 34 
JDB H11 H11 H 0 1 N N N -4.735 -20.857 7.600  8.035  0.649  -0.399 H11 JDB 35 
JDB H12 H12 H 0 1 N N N -3.360 -19.994 6.831  8.386  2.126  0.531  H12 JDB 36 
JDB H13 H13 H 0 1 N N N -1.196 -19.689 10.230 6.807  -0.855 0.338  H13 JDB 37 
JDB H14 H14 H 0 1 N N N -1.631 -17.634 11.498 5.123  -2.598 0.105  H14 JDB 38 
JDB H15 H15 H 0 1 N N N -3.117 -15.920 12.231 2.756  -3.237 -0.249 H15 JDB 39 
JDB H16 H16 H 0 1 N N N -5.331 -14.807 12.265 0.440  -2.573 -0.610 H16 JDB 40 
JDB H17 H17 H 0 1 N N N -5.803 -15.434 16.177 -5.695 -0.817 -0.081 H17 JDB 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JDB CAY OAX SING N N 1  
JDB OAX CAW SING N N 2  
JDB CAW CAT DOUB Y N 3  
JDB CAW CAV SING Y N 4  
JDB CAT CAR SING Y N 5  
JDB CAR CAS DOUB Y N 6  
JDB CAR CAQ SING Y N 7  
JDB CAV CAU DOUB Y N 8  
JDB CAS CAN SING Y N 9  
JDB CAU CAQ SING Y N 10 
JDB CAQ CAP DOUB Y N 11 
JDB CAN CAM SING N N 12 
JDB CAN CAO DOUB Y N 13 
JDB CAM CAL SING N N 14 
JDB CAP CAO SING Y N 15 
JDB CAL C5  SING N N 16 
JDB O6  C6  DOUB N N 17 
JDB C5  C6  SING N N 18 
JDB C5  C4  DOUB N N 19 
JDB C6  N1  SING N N 20 
JDB OAK CAI DOUB N N 21 
JDB C4  CAI SING N N 22 
JDB C4  N3  SING N N 23 
JDB CAI OAJ SING N N 24 
JDB N1  C2  SING N N 25 
JDB N3  C2  SING N N 26 
JDB C2  O2  DOUB N N 27 
JDB OAJ H1  SING N N 28 
JDB N1  H2  SING N N 29 
JDB CAL H4  SING N N 30 
JDB CAL H5  SING N N 31 
JDB CAM H6  SING N N 32 
JDB CAM H7  SING N N 33 
JDB CAS H8  SING N N 34 
JDB CAT H9  SING N N 35 
JDB CAY H10 SING N N 36 
JDB CAY H11 SING N N 37 
JDB CAY H12 SING N N 38 
JDB CAV H13 SING N N 39 
JDB CAU H14 SING N N 40 
JDB CAP H15 SING N N 41 
JDB CAO H16 SING N N 42 
JDB N3  H17 SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JDB SMILES           ACDLabs              12.01 "O=C1NC(C(=O)O)=C(C(=O)N1)CCc3cc2cc(OC)ccc2cc3"                                                                                                   
JDB InChI            InChI                1.03  "InChI=1S/C18H16N2O5/c1-25-13-6-5-11-4-2-10(8-12(11)9-13)3-7-14-15(17(22)23)19-18(24)20-16(14)21/h2,4-6,8-9H,3,7H2,1H3,(H,22,23)(H2,19,20,21,24)" 
JDB InChIKey         InChI                1.03  BIZXBPHEWFJZCA-UHFFFAOYSA-N                                                                                                                       
JDB SMILES_CANONICAL CACTVS               3.370 "COc1ccc2ccc(CCC3=C(NC(=O)NC3=O)C(O)=O)cc2c1"                                                                                                     
JDB SMILES           CACTVS               3.370 "COc1ccc2ccc(CCC3=C(NC(=O)NC3=O)C(O)=O)cc2c1"                                                                                                     
JDB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1ccc2ccc(cc2c1)CCC3=C(NC(=O)NC3=O)C(=O)O"                                                                                                     
JDB SMILES           "OpenEye OEToolkits" 1.7.6 "COc1ccc2ccc(cc2c1)CCC3=C(NC(=O)NC3=O)C(=O)O"                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
JDB "SYSTEMATIC NAME" ACDLabs              12.01 "5-[2-(7-methoxynaphthalen-2-yl)ethyl]-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid" 
JDB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "5-[2-(7-methoxynaphthalen-2-yl)ethyl]-2,4-bis(oxidanylidene)-1H-pyrimidine-6-carboxylic acid"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JDB "Create component" 2013-02-27 PDBJ 
JDB "Initial release"  2014-02-26 RCSB 
# 
