data_GDB
# 
_chem_comp.id                                    GDB 
_chem_comp.name                                  "1-(S-GLUTATHIONYL)-2,4-DINITROBENZENE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H19 N5 O10 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2008-10-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   OBS 
_chem_comp.pdbx_replaced_by                      GDN 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        473.415 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GDB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GDB N1    N1    N 0 1 N N N 14.896 10.813 23.339 6.284  -1.672 2.110  N1    GDB 1  
GDB CA1   CA1   C 0 1 N N S 14.793 9.891  24.519 5.978  -2.183 0.767  CA1   GDB 2  
GDB C1    C1    C 0 1 N N N 15.927 8.927  24.613 7.261  -2.384 0.002  C1    GDB 3  
GDB O11   O11   O 0 1 N N N 16.400 8.403  25.578 7.285  -3.197 -1.065 O11   GDB 4  
GDB O12   O12   O 0 1 N N N 16.412 8.701  23.332 8.267  -1.812 0.349  O12   GDB 5  
GDB CB1   CB1   C 0 1 N N N 13.424 9.257  24.530 5.095  -1.175 0.028  CB1   GDB 6  
GDB CG1   CG1   C 0 1 N N N 13.128 8.675  25.974 3.744  -1.065 0.736  CG1   GDB 7  
GDB CD1   CD1   C 0 1 N N N 11.715 8.063  25.966 2.874  -0.073 0.008  CD1   GDB 8  
GDB OE1   OE1   O 0 1 N N N 11.076 8.021  24.886 3.294  0.490  -0.981 OE1   GDB 9  
GDB N2    N2    N 0 1 N N N 11.337 7.647  27.176 1.630  0.189  0.455  N2    GDB 10 
GDB CA2   CA2   C 0 1 N N R 10.047 7.041  27.473 0.785  1.153  -0.253 CA2   GDB 11 
GDB C2    C2    C 0 1 N N N 9.600  7.471  28.870 1.096  2.545  0.232  C2    GDB 12 
GDB O2    O2    O 0 1 N N N 10.493 7.657  29.685 1.941  2.715  1.086  O2    GDB 13 
GDB CB2   CB2   C 0 1 N N N 10.099 5.498  27.298 -0.688 0.836  0.017  CB2   GDB 14 
GDB SG2   SG2   S 0 1 N N N 8.451  4.852  27.097 -1.062 -0.840 -0.567 SG2   GDB 15 
GDB N3    N3    N 0 1 N N N 8.319  7.624  29.142 0.435  3.602  -0.282 N3    GDB 16 
GDB CA3   CA3   C 0 1 N N N 7.911  8.041  30.505 0.738  4.955  0.190  CA3   GDB 17 
GDB C3    C3    C 0 1 N N N 7.240  9.368  30.486 -0.132 5.947  -0.539 C3    GDB 18 
GDB O31   O31   O 0 1 N N N 7.357  10.177 29.525 -0.027 7.258  -0.268 O31   GDB 19 
GDB O32   O32   O 0 1 N N N 6.451  9.815  31.482 -0.923 5.563  -1.367 O32   GDB 20 
GDB "C1'" "C1'" C 0 1 Y N N 7.655  5.361  25.646 -2.769 -0.938 -0.143 "C1'" GDB 21 
GDB "C2'" "C2'" C 0 1 Y N N 6.256  5.214  25.537 -3.492 -2.090 -0.425 "C2'" GDB 22 
GDB "N2'" "N2'" N 0 1 N N N 5.326  4.650  26.537 -2.828 -3.241 -1.076 "N2'" GDB 23 
GDB O21   O21   O 0 1 N N N 5.662  4.392  27.700 -3.459 -4.255 -1.314 O21   GDB 24 
GDB O22   O22   O 0 1 N N N 4.152  4.442  26.085 -1.649 -3.174 -1.376 O22   GDB 25 
GDB "C3'" "C3'" C 0 1 Y N N 5.633  5.657  24.331 -4.829 -2.166 -0.085 "C3'" GDB 26 
GDB "C4'" "C4'" C 0 1 Y N N 6.419  6.219  23.279 -5.451 -1.091 0.523  "C4'" GDB 27 
GDB "N4'" "N4'" N 0 1 N N N 5.787  6.660  22.094 -6.885 -1.173 0.880  "N4'" GDB 28 
GDB O41   O41   O 0 1 N N N 4.438  6.538  21.959 -7.434 -0.227 1.416  O41   GDB 29 
GDB O42   O42   O 0 1 N N N 6.482  7.216  21.041 -7.516 -2.186 0.637  O42   GDB 30 
GDB "C5'" "C5'" C 0 1 Y N N 7.818  6.354  23.395 -4.736 0.060  0.800  "C5'" GDB 31 
GDB "C6'" "C6'" C 0 1 Y N N 8.438  5.930  24.575 -3.398 0.140  0.469  "C6'" GDB 32 
GDB HN11  1HN1  H 0 0 N N N 14.120 11.472 23.274 6.768  -0.795 1.984  HN11  GDB 33 
GDB HN12  2HN1  H 0 0 N N N 14.994 10.283 22.472 5.401  -1.455 2.546  HN12  GDB 34 
GDB HA1   HA1   H 0 1 N N N 14.895 10.484 25.457 5.452  -3.134 0.851  HA1   GDB 35 
GDB HO2   HO2   H 0 1 N N N 17.134 8.086  23.391 ?      ?      ?      HO2   GDB 36 
GDB HB11  1HB1  H 0 0 N N N 12.629 9.960  24.186 5.583  -0.201 0.021  HB11  GDB 37 
GDB HB12  2HB1  H 0 0 N N N 13.308 8.486  23.732 4.941  -1.512 -0.998 HB12  GDB 38 
GDB HG11  1HG1  H 0 0 N N N 13.907 7.953  26.314 3.256  -2.040 0.743  HG11  GDB 39 
GDB HG12  2HG1  H 0 0 N N N 13.263 9.434  26.779 3.898  -0.729 1.762  HG12  GDB 40 
GDB HN2   HN2   H 0 1 N N N 12.050 7.795  27.889 1.294  -0.262 1.246  HN2   GDB 41 
GDB HA2   HA2   H 0 1 N N N 9.282  7.401  26.745 0.979  1.089  -1.324 HA2   GDB 42 
GDB HB21  1HB2  H 0 0 N N N 10.771 5.194  26.462 -0.882 0.899  1.088  HB21  GDB 43 
GDB HB22  2HB2  H 0 0 N N N 10.643 5.000  28.134 -1.316 1.553  -0.510 HB22  GDB 44 
GDB HN3   HN3   H 0 1 N N N 7.692  7.434  28.359 -0.240 3.466  -0.965 HN3   GDB 45 
GDB HA31  1HA3  H 0 0 N N N 7.275  7.268  30.996 0.543  5.019  1.260  HA31  GDB 46 
GDB HA32  2HA3  H 0 0 N N N 8.773  8.028  31.212 1.787  5.181  -0.003 HA32  GDB 47 
GDB HO3   HO3   H 0 1 N N N 6.022  10.662 31.469 ?      ?      ?      HO3   GDB 48 
GDB "H3'" "H3'" H 0 1 N N N 4.540  5.564  24.211 -5.390 -3.063 -0.299 "H3'" GDB 49 
GDB "H5'" "H5'" H 0 1 N N N 8.417  6.784  22.575 -5.225 0.898  1.276  "H5'" GDB 50 
GDB "H6'" "H6'" H 0 1 N N N 9.531  6.043  24.660 -2.840 1.039  0.686  "H6'" GDB 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GDB N1    CA1   SING N N 1  
GDB N1    HN11  SING N N 2  
GDB N1    HN12  SING N N 3  
GDB CA1   C1    SING N N 4  
GDB CA1   CB1   SING N N 5  
GDB CA1   HA1   SING N N 6  
GDB C1    O11   DOUB N N 7  
GDB C1    O12   SING N N 8  
GDB O12   HO2   SING N N 9  
GDB CB1   CG1   SING N N 10 
GDB CB1   HB11  SING N N 11 
GDB CB1   HB12  SING N N 12 
GDB CG1   CD1   SING N N 13 
GDB CG1   HG11  SING N N 14 
GDB CG1   HG12  SING N N 15 
GDB CD1   OE1   DOUB N N 16 
GDB CD1   N2    SING N N 17 
GDB N2    CA2   SING N N 18 
GDB N2    HN2   SING N N 19 
GDB CA2   C2    SING N N 20 
GDB CA2   CB2   SING N N 21 
GDB CA2   HA2   SING N N 22 
GDB C2    O2    DOUB N N 23 
GDB C2    N3    SING N N 24 
GDB CB2   SG2   SING N N 25 
GDB CB2   HB21  SING N N 26 
GDB CB2   HB22  SING N N 27 
GDB SG2   "C1'" SING N N 28 
GDB N3    CA3   SING N N 29 
GDB N3    HN3   SING N N 30 
GDB CA3   C3    SING N N 31 
GDB CA3   HA31  SING N N 32 
GDB CA3   HA32  SING N N 33 
GDB C3    O31   DOUB N N 34 
GDB C3    O32   SING N N 35 
GDB O32   HO3   SING N N 36 
GDB "C1'" "C2'" DOUB Y N 37 
GDB "C1'" "C6'" SING Y N 38 
GDB "C2'" "N2'" SING N N 39 
GDB "C2'" "C3'" SING Y N 40 
GDB "N2'" O21   DOUB N N 41 
GDB "N2'" O22   DOUB N N 42 
GDB "C3'" "C4'" DOUB Y N 43 
GDB "C3'" "H3'" SING N N 44 
GDB "C4'" "N4'" SING N N 45 
GDB "C4'" "C5'" SING Y N 46 
GDB "N4'" O41   DOUB N N 47 
GDB "N4'" O42   DOUB N N 48 
GDB "C5'" "C6'" DOUB Y N 49 
GDB "C5'" "H5'" SING N N 50 
GDB "C6'" "H6'" SING N N 51 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GDB SMILES           ACDLabs              10.04 "O=C(O)C(N)CCC(=O)NC(C(=O)NCC(=O)O)CSc1ccc(cc1N(=O)=O)N(=O)=O" 
GDB InChI            InChI                1.02b 
"InChI=1/C16H19N5O10S/c17-9(16(26)27)2-4-13(22)19-10(15(25)18-6-14(23)24)7-32-12-3-1-8(20(28)29)5-11(12)21(30)31/h1,3,5,9-10H,2,4,6-7,17H2,(H,18,25)(H,19,22)(H,23,24)(H,26,27)/t9-,10-/m0/s1/f/h18-19,23,26H" 
GDB InChIKey         InChI                1.02b FXEUKVKGTKDDIQ-ZMIYAPQADI 
GDB SMILES_CANONICAL CACTVS               3.341 "N[C@@H](CCC(=O)N[C@@H](CSc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O" 
GDB SMILES           CACTVS               3.341 "N[CH](CCC(=O)N[CH](CSc1ccc(cc1[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O" 
GDB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1N(=O)=O)N(=O)=O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N" 
GDB SMILES           "OpenEye OEToolkits" 1.5.0 "c1cc(c(cc1N(=O)=O)N(=O)=O)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GDB "SYSTEMATIC NAME" ACDLabs              10.04 "L-gamma-glutamyl-S-(2,4-dinitrophenyl)-L-cysteinylglycine"                                                                
GDB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-[[(2R)-1-(carboxymethylamino)-3-(2,4-dinitrophenyl)sulfanyl-1-oxo-propan-2-yl]amino]-5-oxo-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GDB "Create component" 1999-07-08 EBI 
# 
