data_G9B
# 
_chem_comp.id                                    G9B 
_chem_comp.name                                  "N-[3-(2-{3-amino-6-[1-(1-methylpiperidin-4-yl)-1H-pyrazol-4-yl]pyrazin-2-yl}-1H-benzimidazol-1-yl)phenyl]propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H31 N9 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-09-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        521.616 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G9B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4V0G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G9B C1   C1   C 0 1 Y N N N N N -7.042 -8.746  -5.583  4.921  -0.337 0.471  C1   G9B 1  
G9B C2   C2   C 0 1 Y N N N N N -6.739 -7.428  -5.415  5.386  -1.591 0.037  C2   G9B 2  
G9B C3   C3   C 0 1 Y N N N N N -7.972 -9.389  -4.784  5.823  0.614  0.928  C3   G9B 3  
G9B C4   C4   C 0 1 Y N N N N N -7.354 -6.682  -4.431  6.758  -1.865 0.071  C4   G9B 4  
G9B C5   C5   C 0 1 Y N N N N N -8.601 -8.649  -3.794  7.170  0.322  0.952  C5   G9B 5  
G9B C6   C6   C 0 1 Y N N N N N -8.291 -7.303  -3.618  7.630  -0.916 0.523  C6   G9B 6  
G9B N7   N7   N 0 1 Y N N N N N -6.308 -9.200  -6.595  3.546  -0.364 0.327  N7   G9B 7  
G9B C8   C8   C 0 1 Y N N N N N -5.538 -8.171  -7.040  3.217  -1.596 -0.176 C8   G9B 8  
G9B N9   N9   N 0 1 Y N N N N N -5.812 -7.064  -6.312  4.304  -2.309 -0.348 N9   G9B 9  
G9B C10  C10  C 0 1 Y N N N N N -6.374 -10.596 -7.052  2.657  0.673  0.637  C10  G9B 10 
G9B C11  C11  C 0 1 Y N N N N N -5.673 -11.565 -6.346  1.925  1.285  -0.371 C11  G9B 11 
G9B C12  C12  C 0 1 Y N N N N N -7.132 -10.951 -8.151  2.502  1.086  1.954  C12  G9B 12 
G9B C13  C13  C 0 1 Y N N N N N -5.711 -12.893 -6.742  1.045  2.311  -0.060 C13  G9B 13 
G9B C14  C14  C 0 1 Y N N N N N -7.176 -12.278 -8.550  1.625  2.108  2.261  C14  G9B 14 
G9B C15  C15  C 0 1 Y N N N N N -6.470 -13.246 -7.851  0.899  2.723  1.259  C15  G9B 15 
G9B N16  N16  N 0 1 N N N N N N -4.977 -13.839 -5.988  0.306  2.931  -1.073 N16  G9B 16 
G9B C17  C17  C 0 1 N N N N N N -4.866 -15.206 -6.143  0.023  4.246  -0.993 C17  G9B 17 
G9B C18  C18  C 0 1 N N N N N N -3.995 -15.964 -5.164  -0.871 4.889  -2.022 C18  G9B 18 
G9B O19  O19  O 0 1 N N N N N N -5.416 -15.806 -7.033  0.488  4.913  -0.093 O19  G9B 19 
G9B C20  C20  C 0 1 N N N N N N -2.697 -16.345 -5.852  -1.028 6.377  -1.702 C20  G9B 20 
G9B C21  C21  C 0 1 Y N N N N N -4.542 -8.166  -8.166  1.845  -2.050 -0.483 C21  G9B 21 
G9B N22  N22  N 0 1 Y N N N N N -4.283 -9.373  -8.825  0.802  -1.302 -0.138 N22  G9B 22 
G9B C23  C23  C 0 1 Y N N N N N -3.881 -7.015  -8.578  1.639  -3.271 -1.147 C23  G9B 23 
G9B C24  C24  C 0 1 Y N N N N N -3.381 -9.449  -9.880  -0.429 -1.714 -0.416 C24  G9B 24 
G9B N25  N25  N 0 1 Y N N N N N -2.983 -7.077  -9.630  0.405  -3.675 -1.420 N25  G9B 25 
G9B C26  C26  C 0 1 Y N N N N N -2.735 -8.284  -10.278 -0.629 -2.931 -1.070 C26  G9B 26 
G9B N27  N27  N 0 1 N N N N N N -4.104 -5.783  -7.946  2.723  -4.053 -1.515 N27  G9B 27 
G9B C28  C28  C 0 1 Y N N N N N -3.123 -10.748 -10.578 -1.594 -0.881 -0.031 C28  G9B 28 
G9B C29  C29  C 0 1 Y N N N N N -2.202 -11.050 -11.557 -2.909 -1.220 -0.166 C29  G9B 29 
G9B C30  C30  C 0 1 Y N N N N N -3.784 -11.931 -10.370 -1.545 0.403  0.547  C30  G9B 30 
G9B N31  N31  N 0 1 Y N N N N N -2.346 -12.354 -11.874 -3.646 -0.193 0.301  N31  G9B 31 
G9B N32  N32  N 0 1 Y N N N N N -3.263 -12.874 -11.186 -2.772 0.809  0.740  N32  G9B 32 
G9B C33  C33  C 0 1 N N N N N N -1.553 -13.084 -12.890 -5.109 -0.134 0.343  C33  G9B 33 
G9B C34  C34  C 0 1 N N N N N N -2.045 -12.837 -14.284 -5.611 -0.814 1.620  C34  G9B 34 
G9B C35  C35  C 0 1 N N N N N N -1.617 -14.646 -12.653 -5.686 -0.863 -0.873 C35  G9B 35 
G9B C36  C36  C 0 1 N N N N N N -1.211 -13.595 -15.321 -7.141 -0.804 1.630  C36  G9B 36 
G9B C37  C37  C 0 1 N N N N N N -0.769 -15.366 -13.713 -7.214 -0.852 -0.792 C37  G9B 37 
G9B N38  N38  N 0 1 N N N N N N -1.237 -15.048 -15.076 -7.644 -1.514 0.447  N38  G9B 38 
G9B C39  C39  C 0 1 N N N N N N -0.437 -15.766 -16.087 -9.106 -1.645 0.493  C39  G9B 39 
G9B H3   H3   H 0 1 N N N N N N -8.201 -10.435 -4.927  5.471  1.579  1.262  H3   G9B 40 
G9B H4   H4   H 0 1 N N N N N N -7.112 -5.638  -4.297  7.126  -2.824 -0.260 H4   G9B 41 
G9B H5   H5   H 0 1 N N N N N N -9.335 -9.119  -3.156  7.873  1.061  1.308  H5   G9B 42 
G9B H6   H6   H 0 1 N N N N N N -8.784 -6.737  -2.842  8.688  -1.131 0.548  H6   G9B 43 
G9B H11  H11  H 0 1 N N N N N N -5.093 -11.281 -5.480  2.041  0.963  -1.395 H11  G9B 44 
G9B H12  H12  H 0 1 N N N N N N -7.686 -10.201 -8.695  3.069  0.607  2.739  H12  G9B 45 
G9B H14  H14  H 0 1 N N N N N N -7.764 -12.560 -9.411  1.506  2.426  3.286  H14  G9B 46 
G9B H15  H15  H 0 1 N N N N N N -6.510 -14.277 -8.170  0.214  3.522  1.502  H15  G9B 47 
G9B HN16 HN16 H 0 0 N N N N N N -4.458 -13.458 -5.223  -0.004 2.414  -1.833 HN16 G9B 48 
G9B H18  H18  H 0 1 N N N N N N -3.778 -15.328 -4.293  -0.427 4.775  -3.011 H18  G9B 49 
G9B H18A H18A H 0 0 N N N N N N -4.518 -16.873 -4.832  -1.849 4.408  -2.005 H18A G9B 50 
G9B H20  H20  H 0 1 N N N N N N -2.057 -16.897 -5.148  -1.675 6.842  -2.447 H20  G9B 51 
G9B H20A H20A H 0 0 N N N N N N -2.916 -16.980 -6.723  -1.472 6.491  -0.714 H20A G9B 52 
G9B H20B H20B H 0 0 N N N N N N -2.177 -15.434 -6.184  -0.050 6.858  -1.720 H20B G9B 53 
G9B H26  H26  H 0 1 N N N N N N -2.033 -8.316  -11.098 -1.631 -3.263 -1.294 H26  G9B 54 
G9B HN27 HN27 H 0 0 N N N N N N -3.541 -5.079  -8.379  3.625  -3.722 -1.387 HN27 G9B 55 
G9B HN2A HN2A H 0 0 N N N N N N -5.069 -5.536  -8.029  2.578  -4.932 -1.900 HN2A G9B 56 
G9B H29  H29  H 0 1 N N N N N N -1.491 -10.365 -11.994 -3.290 -2.145 -0.573 H29  G9B 57 
G9B H30  H30  H 0 1 N N N N N N -4.590 -12.084 -9.668  -0.649 0.956  0.789  H30  G9B 58 
G9B H33  H33  H 0 1 N N N N N N -0.500 -12.773 -12.821 -5.433 0.906  0.333  H33  G9B 59 
G9B H34  H34  H 0 1 N N N N N N -3.091 -13.168 -14.357 -5.253 -1.843 1.650  H34  G9B 60 
G9B H34A H34A H 0 0 N N N N N N -1.986 -11.760 -14.497 -5.238 -0.274 2.491  H34A G9B 61 
G9B H35  H35  H 0 1 N N N N N N -1.227 -14.880 -11.652 -5.366 -0.358 -1.785 H35  G9B 62 
G9B H35A H35A H 0 0 N N N N N N -2.661 -14.985 -12.728 -5.329 -1.893 -0.884 H35A G9B 63 
G9B H36  H36  H 0 1 N N N N N N -1.618 -13.394 -16.323 -7.502 -1.300 2.531  H36  G9B 64 
G9B H36A H36A H 0 0 N N N N N N -0.170 -13.242 -15.270 -7.498 0.226  1.615  H36A G9B 65 
G9B H37  H37  H 0 1 N N N N N N 0.279  -15.049 -13.610 -7.570 0.178  -0.795 H37  G9B 66 
G9B H37A H37A H 0 0 N N N N N N -0.841 -16.452 -13.553 -7.627 -1.382 -1.649 H37A G9B 67 
G9B H39  H39  H 0 1 N N N N N N -0.472 -16.846 -15.883 -9.559 -0.654 0.525  H39  G9B 68 
G9B H39A H39A H 0 0 N N N N N N -0.848 -15.568 -17.088 -9.452 -2.174 -0.395 H39A G9B 69 
G9B H39B H39B H 0 0 N N N N N N 0.606  -15.418 -16.044 -9.393 -2.204 1.384  H39B G9B 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G9B C1  C2   DOUB Y N 1  
G9B C1  C3   SING Y N 2  
G9B C1  N7   SING Y N 3  
G9B C2  C4   SING Y N 4  
G9B C2  N9   SING Y N 5  
G9B C3  C5   DOUB Y N 6  
G9B C4  C6   DOUB Y N 7  
G9B C5  C6   SING Y N 8  
G9B N7  C8   SING Y N 9  
G9B N7  C10  SING N N 10 
G9B C8  N9   DOUB Y N 11 
G9B C8  C21  SING N N 12 
G9B C10 C11  DOUB Y N 13 
G9B C10 C12  SING Y N 14 
G9B C11 C13  SING Y N 15 
G9B C12 C14  DOUB Y N 16 
G9B C13 C15  DOUB Y N 17 
G9B C13 N16  SING N N 18 
G9B C14 C15  SING Y N 19 
G9B N16 C17  SING N N 20 
G9B C17 C18  SING N N 21 
G9B C17 O19  DOUB N N 22 
G9B C18 C20  SING N N 23 
G9B C21 N22  DOUB Y N 24 
G9B C21 C23  SING Y N 25 
G9B N22 C24  SING Y N 26 
G9B C23 N25  DOUB Y N 27 
G9B C23 N27  SING N N 28 
G9B C24 C26  DOUB Y N 29 
G9B C24 C28  SING N N 30 
G9B N25 C26  SING Y N 31 
G9B C28 C29  DOUB Y N 32 
G9B C28 C30  SING Y N 33 
G9B C29 N31  SING Y N 34 
G9B C30 N32  DOUB Y N 35 
G9B N31 N32  SING Y N 36 
G9B N31 C33  SING N N 37 
G9B C33 C34  SING N N 38 
G9B C33 C35  SING N N 39 
G9B C34 C36  SING N N 40 
G9B C35 C37  SING N N 41 
G9B C36 N38  SING N N 42 
G9B C37 N38  SING N N 43 
G9B N38 C39  SING N N 44 
G9B C3  H3   SING N N 45 
G9B C4  H4   SING N N 46 
G9B C5  H5   SING N N 47 
G9B C6  H6   SING N N 48 
G9B C11 H11  SING N N 49 
G9B C12 H12  SING N N 50 
G9B C14 H14  SING N N 51 
G9B C15 H15  SING N N 52 
G9B N16 HN16 SING N N 53 
G9B C18 H18  SING N N 54 
G9B C18 H18A SING N N 55 
G9B C20 H20  SING N N 56 
G9B C20 H20A SING N N 57 
G9B C20 H20B SING N N 58 
G9B C26 H26  SING N N 59 
G9B N27 HN27 SING N N 60 
G9B N27 HN2A SING N N 61 
G9B C29 H29  SING N N 62 
G9B C30 H30  SING N N 63 
G9B C33 H33  SING N N 64 
G9B C34 H34  SING N N 65 
G9B C34 H34A SING N N 66 
G9B C35 H35  SING N N 67 
G9B C35 H35A SING N N 68 
G9B C36 H36  SING N N 69 
G9B C36 H36A SING N N 70 
G9B C37 H37  SING N N 71 
G9B C37 H37A SING N N 72 
G9B C39 H39  SING N N 73 
G9B C39 H39A SING N N 74 
G9B C39 H39B SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G9B SMILES           ACDLabs              12.01 "O=C(Nc1cccc(c1)n2c6ccccc6nc2c5nc(c3cn(nc3)C4CCN(C)CC4)cnc5N)CC"                                                                                                                                        
G9B InChI            InChI                1.03  "InChI=1S/C29H31N9O/c1-3-26(39)33-20-7-6-8-22(15-20)38-25-10-5-4-9-23(25)35-29(38)27-28(30)31-17-24(34-27)19-16-32-37(18-19)21-11-13-36(2)14-12-21/h4-10,15-18,21H,3,11-14H2,1-2H3,(H2,30,31)(H,33,39)" 
G9B InChIKey         InChI                1.03  KKUKNIKTWVWHBF-UHFFFAOYSA-N                                                                                                                                                                             
G9B SMILES_CANONICAL CACTVS               3.385 "CCC(=O)Nc1cccc(c1)n2c3ccccc3nc2c4nc(cnc4N)c5cnn(c5)C6CCN(C)CC6"                                                                                                                                        
G9B SMILES           CACTVS               3.385 "CCC(=O)Nc1cccc(c1)n2c3ccccc3nc2c4nc(cnc4N)c5cnn(c5)C6CCN(C)CC6"                                                                                                                                        
G9B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCC(=O)Nc1cccc(c1)n2c3ccccc3nc2c4c(ncc(n4)c5cnn(c5)C6CCN(CC6)C)N"                                                                                                                                      
G9B SMILES           "OpenEye OEToolkits" 1.7.6 "CCC(=O)Nc1cccc(c1)n2c3ccccc3nc2c4c(ncc(n4)c5cnn(c5)C6CCN(CC6)C)N"                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G9B "SYSTEMATIC NAME" ACDLabs              12.01 "N-[3-(2-{3-amino-6-[1-(1-methylpiperidin-4-yl)-1H-pyrazol-4-yl]pyrazin-2-yl}-1H-benzimidazol-1-yl)phenyl]propanamide" 
G9B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[3-[2-[3-azanyl-6-[1-(1-methylpiperidin-4-yl)pyrazol-4-yl]pyrazin-2-yl]benzimidazol-1-yl]phenyl]propanamide"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G9B "Create component" 2014-09-16 EBI  
G9B "Initial release"  2016-01-13 RCSB 
G9B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            G9B 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C20 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
