data_DSB
# 
_chem_comp.id                                    DSB 
_chem_comp.name                                  "4,7-DIOXOSEBACIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H14 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-03-19 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        230.215 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DSB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DSB C1   C1   C 0 1 N N N N N N 49.093 21.133 91.205 1.634  -4.065 -2.835 C1   DSB 1  
DSB O2   O2   O 0 1 N N N N N N 48.542 22.247 90.980 2.068  -4.559 -1.804 O2   DSB 2  
DSB C2   C2   C 0 1 N N N N N N 50.323 20.845 90.372 1.208  -2.625 -3.017 C2   DSB 3  
DSB C3   C3   C 0 1 N N N N N N 50.657 19.359 90.381 1.278  -1.808 -1.732 C3   DSB 4  
DSB C5   C5   C 0 1 N N N N N N 53.058 19.317 89.561 0.643  0.506  -0.729 C5   DSB 5  
DSB O1   O1   O 0 1 N N N N N N 48.716 20.259 92.048 1.471  -4.777 -3.982 O1   DSB 6  
DSB C6   C6   C 0 1 N N N N N N 53.974 19.157 88.359 0.127  1.887  -1.113 C6   DSB 7  
DSB C8   C8   C 0 1 N N N N N N 52.876 21.306 87.079 -0.405 4.267  -0.291 C8   DSB 8  
DSB C9   C9   C 0 1 N N N N N N 53.274 22.139 88.282 -0.493 5.195  0.918  C9   DSB 9  
DSB C10  C10  C 0 1 N N N N N N 53.484 23.578 87.855 -0.857 6.610  0.537  C10  DSB 10 
DSB O11  O11  O 0 1 N N N N N N 53.450 23.836 86.624 -0.852 7.404  1.639  O11  DSB 11 
DSB O12  O12  O 0 1 N N N N N N 53.703 24.411 88.770 -1.131 7.010  -0.585 O12  DSB 12 
DSB C7   C7   C 0 1 N N N N N N 53.504 19.928 87.094 0.017  2.847  0.065  C7   DSB 13 
DSB C4   C4   C 0 1 N N N N N N 51.599 19.006 89.271 0.783  -0.389 -1.945 C4   DSB 14 
DSB O4   O4   O 0 1 N Y N N N N ?      ?      ?      0.543  0.034  -3.077 O4   DSB 15 
DSB O7   O7   O 0 1 N Y N N N N ?      ?      ?      0.250  2.502  1.222  O7   DSB 16 
DSB H21  1H2  H 0 1 N N N N N N 51.173 21.397 90.800 1.824  -2.172 -3.802 H21  DSB 17 
DSB H22  2H2  H 0 1 N N N N N N 50.134 21.162 89.336 0.165  -2.649 -3.356 H22  DSB 18 
DSB H31  1H3  H 0 1 N N N N N N 49.725 18.792 90.240 2.275  -1.788 -1.281 H31  DSB 19 
DSB H32  2H3  H 0 1 N N N N N N 51.129 19.106 91.342 0.612  -2.256 -0.983 H32  DSB 20 
DSB H51  1H5  H 0 1 N N N N N N 53.107 20.373 89.864 1.627  0.601  -0.257 H51  DSB 21 
DSB H52  2H5  H 0 1 N N N N N N 53.403 18.627 90.346 -0.000 0.000  0.000  H52  DSB 22 
DSB H11  1H1  H 0 1 N N N N N N 47.939 20.568 92.499 1.728  -5.722 -3.923 H11  DSB 23 
DSB H61  1H6  H 0 1 N N N N N N 53.976 18.088 88.099 -0.855 1.824  -1.592 H61  DSB 24 
DSB H62  2H6  H 0 1 N N N N N N 54.968 19.537 88.638 0.830  2.340  -1.821 H62  DSB 25 
DSB H81  1H8  H 0 1 N N N N N N 53.231 21.827 86.178 0.353  4.659  -0.979 H81  DSB 26 
DSB H82  2H8  H 0 1 N N N N N N 51.782 21.190 87.082 -1.362 4.221  -0.822 H82  DSB 27 
DSB H91  1H9  H 0 1 N N N N N N 54.208 21.744 88.708 -1.223 4.827  1.647  H91  DSB 28 
DSB H92  2H9  H 0 1 N N N N N N 52.477 22.094 89.039 0.493  5.233  1.396  H92  DSB 29 
DSB H111 1H11 H 0 0 N N N N N N 53.616 24.762 86.489 -1.094 8.330  1.424  H111 DSB 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DSB C1  O2   DOUB N N 1  
DSB C1  C2   SING N N 2  
DSB C1  O1   SING N N 3  
DSB C2  C3   SING N N 4  
DSB C2  H21  SING N N 5  
DSB C2  H22  SING N N 6  
DSB C3  C4   SING N N 7  
DSB C3  H31  SING N N 8  
DSB C3  H32  SING N N 9  
DSB C5  C6   SING N N 10 
DSB C5  C4   SING N N 11 
DSB C5  H51  SING N N 12 
DSB C5  H52  SING N N 13 
DSB O1  H11  SING N N 14 
DSB C6  C7   SING N N 15 
DSB C6  H61  SING N N 16 
DSB C6  H62  SING N N 17 
DSB C8  C9   SING N N 18 
DSB C8  C7   SING N N 19 
DSB C8  H81  SING N N 20 
DSB C8  H82  SING N N 21 
DSB C9  C10  SING N N 22 
DSB C9  H91  SING N N 23 
DSB C9  H92  SING N N 24 
DSB C10 O11  SING N N 25 
DSB C10 O12  DOUB N N 26 
DSB O11 H111 SING N N 27 
DSB C7  O7   DOUB N N 28 
DSB C4  O4   DOUB N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DSB SMILES           ACDLabs              10.04 "O=C(CCC(=O)CCC(=O)O)CCC(=O)O"                                                        
DSB SMILES_CANONICAL CACTVS               3.341 "OC(=O)CCC(=O)CCC(=O)CCC(O)=O"                                                        
DSB SMILES           CACTVS               3.341 "OC(=O)CCC(=O)CCC(=O)CCC(O)=O"                                                        
DSB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(CC(=O)CCC(=O)O)C(=O)CCC(=O)O"                                                      
DSB SMILES           "OpenEye OEToolkits" 1.5.0 "C(CC(=O)CCC(=O)O)C(=O)CCC(=O)O"                                                      
DSB InChI            InChI                1.03  "InChI=1S/C10H14O6/c11-7(3-5-9(13)14)1-2-8(12)4-6-10(15)16/h1-6H2,(H,13,14)(H,15,16)" 
DSB InChIKey         InChI                1.03  DUAWJQCMZICMIK-UHFFFAOYSA-N                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DSB "SYSTEMATIC NAME" ACDLabs              10.04 "4,7-dioxodecanedioic acid" 
DSB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4,7-dioxodecanedioic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DSB "Create component"  2001-03-19 RCSB 
DSB "Modify descriptor" 2011-06-04 RCSB 
DSB "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 DSB LYS None Crosslinker "Amino-acid side chain" "Any position" C4 NZ ? ? 
2 DSB LYS None Crosslinker "Amino-acid side chain" "Any position" C7 NZ ? ? 
# 
