data_DNB
#

_chem_comp.id                                   DNB
_chem_comp.name                                 "(2S,3S,4R,5R)-2-(3,4-diaminophenyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H17 N3 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Diaminophenyl iminoribitol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-02-12
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       239.271
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DNB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3G5I
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DNB  "O2'"   "O2'"   O  0  1  N  N  N  44.435  -15.765  67.848  -0.900   2.510  -0.698  "O2'"   DNB   1  
DNB  "C2'"   "C2'"   C  0  1  N  N  S  45.812  -15.521  68.290  -1.205   1.114  -0.718  "C2'"   DNB   2  
DNB  "C3'"   "C3'"   C  0  1  N  N  R  46.062  -14.012  68.350  -2.721   0.883  -0.522  "C3'"   DNB   3  
DNB  "O3'"   "O3'"   O  0  1  N  N  N  45.002  -13.318  67.677  -3.319   2.020   0.104  "O3'"   DNB   4  
DNB  "C1'"   "C1'"   C  0  1  N  N  S  46.848  -16.069  67.299  -0.584   0.399   0.508  "C1'"   DNB   5  
DNB  "N4'"   "N4'"   N  0  1  N  N  N  47.498  -14.875  66.785  -1.444  -0.801   0.673  "N4'"   DNB   6  
DNB  "C4'"   "C4'"   C  0  1  N  N  R  47.395  -13.715  67.651  -2.825  -0.349   0.396  "C4'"   DNB   7  
DNB  "C5'"   "C5'"   C  0  1  N  N  N  48.621  -13.568  68.603  -3.605  -1.460  -0.309  "C5'"   DNB   8  
DNB  "O5'"   "O5'"   O  0  1  N  N  N  49.868  -13.688  67.871  -3.796  -2.553   0.592  "O5'"   DNB   9  
DNB  C1      C1      C  0  1  Y  N  N  47.971  -16.857  67.868   0.841  -0.002   0.225  C1      DNB  10  
DNB  C6      C6      C  0  1  Y  N  N  48.020  -17.267  69.203   1.102  -1.142  -0.512  C6      DNB  11  
DNB  C5      C5      C  0  1  Y  N  N  49.120  -18.004  69.684   2.407  -1.516  -0.776  C5      DNB  12  
DNB  C4      C4      C  0  1  Y  N  N  50.174  -18.314  68.821   3.458  -0.746  -0.302  C4      DNB  13  
DNB  C3      C3      C  0  1  Y  N  N  50.123  -17.887  67.483   3.194   0.405   0.441  C3      DNB  14  
DNB  N3      N3      N  0  1  N  N  N  51.149  -18.165  66.641   4.251   1.188   0.923  N3      DNB  15  
DNB  C2      C2      C  0  1  Y  N  N  49.035  -17.170  67.004   1.883   0.775   0.697  C2      DNB  16  
DNB  "HO2'"  "HO2'"  H  0  0  N  N  N  43.864  -15.818  68.605  -1.329   3.017  -1.401  "HO2'"  DNB  17  
DNB  "H2'"   "H2'"   H  0  1  N  N  N  45.920  -16.018  69.265  -0.863   0.659  -1.648  "H2'"   DNB  18  
DNB  "H3'"   "H3'"   H  0  1  N  N  N  46.098  -13.677  69.397  -3.200   0.683  -1.481  "H3'"   DNB  19  
DNB  "HO3'"  "HO3'"  H  0  0  N  N  N  44.288  -13.165  68.284  -3.246   2.836  -0.410  "HO3'"  DNB  20  
DNB  "H1'"   "H1'"   H  0  1  N  N  N  46.307  -16.732  66.608  -0.637   1.035   1.392  "H1'"   DNB  21  
DNB  "HN4'"  "HN4'"  H  0  0  N  N  N  48.469  -15.082  66.665  -1.168  -1.533   0.036  "HN4'"  DNB  22  
DNB  "H4'"   "H4'"   H  0  1  N  N  N  47.408  -12.740  67.142  -3.320  -0.077   1.328  "H4'"   DNB  23  
DNB  "H5'"   "H5'"   H  0  1  N  N  N  48.583  -12.579  69.084  -4.575  -1.077  -0.626  "H5'"   DNB  24  
DNB  "H5'A"  "H5'A"  H  0  0  N  N  N  48.578  -14.369  69.356  -3.046  -1.801  -1.180  "H5'A"  DNB  25  
DNB  "HO5'"  "HO5'"  H  0  0  N  N  N  49.687  -13.714  66.939  -4.285  -3.296   0.212  "HO5'"  DNB  26  
DNB  H6      H6      H  0  1  N  N  N  47.209  -17.017  69.871   0.285  -1.744  -0.881  H6      DNB  27  
DNB  H5      H5      H  0  1  N  N  N  49.148  -18.328  70.714   2.608  -2.408  -1.351  H5      DNB  28  
DNB  HN3     HN3     H  0  1  N  N  N  50.804  -18.233  65.705   5.168   0.930   0.740  HN3     DNB  29  
DNB  HN3A    HN3A    H  0  0  N  N  N  51.830  -17.434  66.692   4.066   1.988   1.439  HN3A    DNB  30  
DNB  H2      H2      H  0  1  N  N  N  49.006  -16.854  65.972   1.675   1.668   1.268  H2      DNB  31  
DNB  N4      N4      N  0  1  N  N  N  51.213  -19.353  68.821   4.780  -1.122  -0.567  N4      DNB  32  
DNB  HN4     HN4     H  0  1  N  N  N  51.449  -19.589  67.878   4.962  -1.923  -1.084  HN4     DNB  33  
DNB  HN4A    HN4A    H  0  0  N  N  N  52.026  -19.011  69.292   5.514  -0.582  -0.235  HN4A    DNB  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DNB  "O2'"  "C2'"   SING  N  N   1  
DNB  "O2'"  "HO2'"  SING  N  N   2  
DNB  "C2'"  "C3'"   SING  N  N   3  
DNB  "C2'"  "C1'"   SING  N  N   4  
DNB  "C2'"  "H2'"   SING  N  N   5  
DNB  "C3'"  "O3'"   SING  N  N   6  
DNB  "C3'"  "C4'"   SING  N  N   7  
DNB  "C3'"  "H3'"   SING  N  N   8  
DNB  "O3'"  "HO3'"  SING  N  N   9  
DNB  "C1'"  "N4'"   SING  N  N  10  
DNB  "C1'"  C1      SING  N  N  11  
DNB  "C1'"  "H1'"   SING  N  N  12  
DNB  "N4'"  "C4'"   SING  N  N  13  
DNB  "N4'"  "HN4'"  SING  N  N  14  
DNB  "C4'"  "C5'"   SING  N  N  15  
DNB  "C4'"  "H4'"   SING  N  N  16  
DNB  "C5'"  "O5'"   SING  N  N  17  
DNB  "C5'"  "H5'"   SING  N  N  18  
DNB  "C5'"  "H5'A"  SING  N  N  19  
DNB  "O5'"  "HO5'"  SING  N  N  20  
DNB  C1     C6      DOUB  Y  N  21  
DNB  C1     C2      SING  Y  N  22  
DNB  C6     C5      SING  Y  N  23  
DNB  C6     H6      SING  N  N  24  
DNB  C5     C4      DOUB  Y  N  25  
DNB  C5     H5      SING  N  N  26  
DNB  C4     C3      SING  Y  N  27  
DNB  C3     N3      SING  N  N  28  
DNB  C3     C2      DOUB  Y  N  29  
DNB  N3     HN3     SING  N  N  30  
DNB  N3     HN3A    SING  N  N  31  
DNB  C2     H2      SING  N  N  32  
DNB  C4     N4      SING  N  N  33  
DNB  N4     HN4     SING  N  N  34  
DNB  N4     HN4A    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DNB  SMILES            ACDLabs               10.04  "OC2C(c1ccc(N)c(N)c1)NC(CO)C2O"  
DNB  SMILES_CANONICAL  CACTVS                3.341  "Nc1ccc(cc1N)[C@@H]2N[C@H](CO)[C@@H](O)[C@H]2O"  
DNB  SMILES            CACTVS                3.341  "Nc1ccc(cc1N)[CH]2N[CH](CO)[CH](O)[CH]2O"  
DNB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cc(c(cc1[C@H]2[C@@H]([C@@H]([C@H](N2)CO)O)O)N)N"  
DNB  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cc(c(cc1C2C(C(C(N2)CO)O)O)N)N"  
DNB  InChI             InChI                 1.03   "InChI=1S/C11H17N3O3/c12-6-2-1-5(3-7(6)13)9-11(17)10(16)8(4-15)14-9/h1-3,8-11,14-17H,4,12-13H2/t8-,9+,10-,11+/m1/s1"  
DNB  InChIKey          InChI                 1.03   YAYMFJWCRXEXGZ-YTWAJWBKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DNB  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3S,4R,5R)-2-(3,4-diaminophenyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol"  
DNB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3S,4R,5R)-2-(3,4-diaminophenyl)-5-(hydroxymethyl)pyrrolidine-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DNB  "Create component"      2009-02-12  PDBJ  
DNB  "Modify aromatic_flag"  2011-06-04  RCSB  
DNB  "Modify descriptor"     2011-06-04  RCSB  
DNB  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DNB
_pdbx_chem_comp_synonyms.name        "Diaminophenyl iminoribitol"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
