data_C8B
# 
_chem_comp.id                                    C8B 
_chem_comp.name                                  "(3~{R},6~{S})-1,4-dimethyl-6-[(4-nitro-1~{H}-indol-3-yl)methyl]-3-oxidanyl-3-(phenylmethyl)piperazine-2,5-dione" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 N4 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-11-18 
_chem_comp.pdbx_modified_date                    2018-12-07 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        422.434 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C8B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6F0C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C8B C1  C1  C 0  1 N N N 9.810  39.994 36.930 -1.699 -0.188 -1.018 C1  C8B 1  
C8B C2  C2  C 0  1 N N R 8.998  41.260 37.243 -2.424 -1.274 -0.281 C2  C8B 2  
C8B C3  C3  C 0  1 N N N 8.548  41.942 35.920 -2.993 -0.703 1.020  C3  C8B 3  
C8B C4  C4  C 0  1 Y N N 9.734  42.483 35.161 -3.864 0.487  0.708  C4  C8B 4  
C8B C5  C5  C 0  1 Y N N 10.194 43.780 35.408 -5.226 0.321  0.541  C5  C8B 5  
C8B C6  C6  C 0  1 Y N N 11.304 44.233 34.703 -6.025 1.412  0.254  C6  C8B 6  
C8B C12 C7  C 0  1 N N N 12.851 41.689 36.947 0.925  -0.309 1.047  C12 C8B 7  
C8B C13 C8  C 0  1 Y N N 14.254 41.669 37.538 1.755  0.911  0.742  C13 C8B 8  
C8B C14 C9  C 0  1 Y N N 15.489 41.289 36.983 3.156  0.926  0.313  C14 C8B 9  
C8B C11 C10 C 0  1 N N S 11.801 41.038 37.905 0.498  -0.976 -0.262 C11 C8B 10 
C8B O5  O1  O 0  1 N N N 7.795  40.801 37.876 -3.500 -1.752 -1.091 O5  C8B 11 
C8B O4  O2  O -1 1 N N N 14.289 41.276 34.364 4.606  -2.352 0.114  O4  C8B 12 
C8B C21 C11 C 0  1 N N N 11.901 38.739 36.973 0.246  1.028  -1.755 C21 C8B 13 
C8B O2  O3  O 0  1 N N N 11.521 43.127 39.099 0.464  -3.238 0.325  O2  C8B 14 
C8B C8  C12 C 0  1 Y N N 11.446 42.147 33.489 -4.102 2.836  0.313  C8  C8B 15 
C8B C9  C13 C 0  1 Y N N 10.349 41.673 34.207 -3.302 1.744  0.594  C9  C8B 16 
C8B C10 C14 C 0  1 N N N 10.925 42.160 38.389 -0.204 -2.264 0.049  C10 C8B 17 
C8B C15 C15 C 0  1 Y N N 15.995 40.766 35.763 4.106  -0.066 0.065  C15 C8B 18 
C8B C16 C16 C 0  1 Y N N 17.360 40.512 35.618 5.365  0.284  -0.335 C16 C8B 19 
C8B C17 C17 C 0  1 Y N N 18.252 40.714 36.666 5.707  1.620  -0.495 C17 C8B 20 
C8B C22 C18 C 0  1 N N N 8.890  43.252 38.782 -2.125 -3.686 0.353  C22 C8B 21 
C8B N4  N1  N 1  1 N N N 15.247 40.573 34.585 3.751  -1.493 0.235  N4  C8B 22 
C8B O3  O4  O 0  1 N N N 15.626 39.845 33.688 2.604  -1.809 0.494  O3  C8B 23 
C8B C18 C19 C 0  1 Y N N 17.779 41.228 37.861 4.786  2.615  -0.255 C18 C8B 24 
C8B C19 C20 C 0  1 Y N N 16.433 41.514 38.019 3.498  2.281  0.151  C19 C8B 25 
C8B N3  N2  N 0  1 Y N N 15.806 42.015 39.117 2.379  3.022  0.462  N3  C8B 26 
C8B C20 C21 C 0  1 Y N N 14.498 42.119 38.845 1.350  2.189  0.806  C20 C8B 27 
C8B N1  N3  N 0  1 N N N 11.097 39.932 37.256 -0.368 -0.067 -1.000 N1  C8B 28 
C8B O1  O5  O 0  1 N N N 9.274  39.014 36.427 -2.347 0.610  -1.661 O1  C8B 29 
C8B N2  N4  N 0  1 N N N 9.686  42.208 38.143 -1.535 -2.383 0.036  N2  C8B 30 
C8B C7  C22 C 0  1 Y N N 11.928 43.431 33.741 -5.462 2.669  0.134  C7  C8B 31 
C8B H1  H1  H 0  1 N N N 7.864  42.770 36.157 -3.587 -1.466 1.523  H1  C8B 32 
C8B H2  H2  H 0  1 N N N 8.026  41.203 35.294 -2.174 -0.393 1.669  H2  C8B 33 
C8B H3  H3  H 0  1 N N N 9.700  44.415 36.129 -5.666 -0.661 0.635  H3  C8B 34 
C8B H4  H4  H 0  1 N N N 11.691 45.221 34.902 -7.089 1.283  0.124  H4  C8B 35 
C8B H5  H5  H 0  1 N N N 12.560 42.733 36.759 1.514  -1.011 1.637  H5  C8B 36 
C8B H6  H6  H 0  1 N N N 12.858 41.133 35.998 0.039  -0.014 1.611  H6  C8B 37 
C8B H7  H7  H 0  1 N N N 12.352 40.640 38.770 1.384  -1.188 -0.860 H7  C8B 38 
C8B H8  H8  H 0  1 N N N 7.672  39.877 37.691 -3.219 -2.118 -1.941 H8  C8B 39 
C8B H9  H9  H 0  1 N N N 12.932 38.899 37.323 -0.535 1.663  -2.174 H9  C8B 40 
C8B H10 H10 H 0  1 N N N 11.468 37.873 37.494 0.878  1.618  -1.091 H10 C8B 41 
C8B H11 H11 H 0  1 N N N 11.907 38.549 35.889 0.851  0.617  -2.563 H11 C8B 42 
C8B H12 H12 H 0  1 N N N 11.919 41.525 32.744 -3.661 3.818  0.219  H12 C8B 43 
C8B H13 H13 H 0  1 N N N 9.975  40.677 34.024 -2.239 1.875  0.734  H13 C8B 44 
C8B H14 H14 H 0  1 N N N 17.732 40.150 34.671 6.099  -0.484 -0.526 H14 C8B 45 
C8B H15 H15 H 0  1 N N N 19.298 40.473 36.549 6.706  1.882  -0.812 H15 C8B 46 
C8B H16 H16 H 0  1 N N N 9.540  43.873 39.416 -2.239 -4.266 -0.563 H16 C8B 47 
C8B H17 H17 H 0  1 N N N 8.423  43.881 38.010 -1.474 -4.221 1.044  H17 C8B 48 
C8B H18 H18 H 0  1 N N N 8.107  42.789 39.401 -3.102 -3.539 0.814  H18 C8B 49 
C8B H19 H19 H 0  1 N N N 18.464 41.407 38.676 5.062  3.652  -0.383 H19 C8B 50 
C8B H20 H20 H 0  1 N N N 16.246 42.263 39.980 2.328  3.990  0.436  H20 C8B 51 
C8B H21 H21 H 0  1 N N N 13.747 42.492 39.526 0.359  2.512  1.089  H21 C8B 52 
C8B H22 H22 H 0  1 N N N 12.781 43.806 33.195 -6.087 3.522  -0.085 H22 C8B 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C8B C8  C7  DOUB Y N 1  
C8B C8  C9  SING Y N 2  
C8B O3  N4  DOUB N N 3  
C8B C7  C6  SING Y N 4  
C8B C9  C4  DOUB Y N 5  
C8B O4  N4  SING N N 6  
C8B N4  C15 SING N N 7  
C8B C6  C5  DOUB Y N 8  
C8B C4  C5  SING Y N 9  
C8B C4  C3  SING N N 10 
C8B C16 C15 DOUB Y N 11 
C8B C16 C17 SING Y N 12 
C8B C15 C14 SING Y N 13 
C8B C3  C2  SING N N 14 
C8B O1  C1  DOUB N N 15 
C8B C17 C18 DOUB Y N 16 
C8B C1  C2  SING N N 17 
C8B C1  N1  SING N N 18 
C8B C12 C13 SING N N 19 
C8B C12 C11 SING N N 20 
C8B C21 N1  SING N N 21 
C8B C14 C13 SING Y N 22 
C8B C14 C19 DOUB Y N 23 
C8B C2  O5  SING N N 24 
C8B C2  N2  SING N N 25 
C8B N1  C11 SING N N 26 
C8B C13 C20 DOUB Y N 27 
C8B C18 C19 SING Y N 28 
C8B C11 C10 SING N N 29 
C8B C19 N3  SING Y N 30 
C8B N2  C10 SING N N 31 
C8B N2  C22 SING N N 32 
C8B C10 O2  DOUB N N 33 
C8B C20 N3  SING Y N 34 
C8B C3  H1  SING N N 35 
C8B C3  H2  SING N N 36 
C8B C5  H3  SING N N 37 
C8B C6  H4  SING N N 38 
C8B C12 H5  SING N N 39 
C8B C12 H6  SING N N 40 
C8B C11 H7  SING N N 41 
C8B O5  H8  SING N N 42 
C8B C21 H9  SING N N 43 
C8B C21 H10 SING N N 44 
C8B C21 H11 SING N N 45 
C8B C8  H12 SING N N 46 
C8B C9  H13 SING N N 47 
C8B C16 H14 SING N N 48 
C8B C17 H15 SING N N 49 
C8B C22 H16 SING N N 50 
C8B C22 H17 SING N N 51 
C8B C22 H18 SING N N 52 
C8B C18 H19 SING N N 53 
C8B N3  H20 SING N N 54 
C8B C20 H21 SING N N 55 
C8B C7  H22 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C8B InChI            InChI                1.03  "InChI=1S/C22H22N4O5/c1-24-18(11-15-13-23-16-9-6-10-17(19(15)16)26(30)31)20(27)25(2)22(29,21(24)28)12-14-7-4-3-5-8-14/h3-10,13,18,23,29H,11-12H2,1-2H3/t18-,22+/m0/s1" 
C8B InChIKey         InChI                1.03  PCCPGPMTZJOQFC-PGRDOPGGSA-N                                                                                                                                            
C8B SMILES_CANONICAL CACTVS               3.385 "CN1[C@@H](Cc2c[nH]c3cccc(c23)[N+]([O-])=O)C(=O)N(C)[C@@](O)(Cc4ccccc4)C1=O"                                                                                           
C8B SMILES           CACTVS               3.385 "CN1[CH](Cc2c[nH]c3cccc(c23)[N+]([O-])=O)C(=O)N(C)[C](O)(Cc4ccccc4)C1=O"                                                                                               
C8B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CN1[C@H](C(=O)N([C@](C1=O)(Cc2ccccc2)O)C)Cc3c[nH]c4c3c(ccc4)[N+](=O)[O-]"                                                                                             
C8B SMILES           "OpenEye OEToolkits" 2.0.6 "CN1C(C(=O)N(C(C1=O)(Cc2ccccc2)O)C)Cc3c[nH]c4c3c(ccc4)[N+](=O)[O-]"                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C8B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{R},6~{S})-1,4-dimethyl-6-[(4-nitro-1~{H}-indol-3-yl)methyl]-3-oxidanyl-3-(phenylmethyl)piperazine-2,5-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C8B "Create component" 2017-11-18 EBI  
C8B "Initial release"  2018-12-12 RCSB 
# 
