data_C6B
# 
_chem_comp.id                                    C6B 
_chem_comp.name                                  "[(2S,3S,4R,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H14 N3 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-11-30 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.197 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C6B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3FBA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C6B O1P    O1P    O 0 1 N N N 94.829  44.574 139.683 -2.829 2.368  -1.092 O1P    C6B 1  
C6B P      P      P 0 1 N N N 94.404  46.183 139.618 -2.964 1.327  0.129  P      C6B 2  
C6B O2P    O2P    O 0 1 N N N 92.976  46.314 140.488 -3.033 2.136  1.519  O2P    C6B 3  
C6B O3P    O3P    O 0 1 N N N 94.314  46.727 138.203 -4.198 0.527  -0.039 O3P    C6B 4  
C6B "O3'"  "O3'"  O 0 1 N N N 95.530  46.960 140.575 -1.686 0.347  0.142  "O3'"  C6B 5  
C6B "C3'"  "C3'"  C 0 1 N N S 96.843  47.039 140.009 -1.408 -0.582 -0.908 "C3'"  C6B 6  
C6B "C2'"  "C2'"  C 0 1 N N R 97.295  48.485 139.770 -0.032 -0.288 -1.555 "C2'"  C6B 7  
C6B "O2'"  "O2'"  O 0 1 N N N 97.341  49.271 140.976 0.360  1.063  -1.303 "O2'"  C6B 8  
C6B "C4'"  "C4'"  C 0 1 N N S 98.016  46.364 140.818 -1.202 -2.010 -0.342 "C4'"  C6B 9  
C6B "C5'"  "C5'"  C 0 1 N N N 97.927  46.277 142.366 -2.160 -2.272 0.822  "C5'"  C6B 10 
C6B "O5'"  "O5'"  O 0 1 N N N 98.277  44.956 142.814 -2.032 -3.629 1.249  "O5'"  C6B 11 
C6B "O4'"  "O4'"  O 0 1 N N N 99.146  47.259 140.522 0.166  -1.996 0.119  "O4'"  C6B 12 
C6B "C1'"  "C1'"  C 0 1 N N S 98.653  47.953 139.314 0.930  -1.268 -0.857 "C1'"  C6B 13 
C6B N1     N1     N 0 1 N N N 99.632  48.689 138.482 2.005  -0.525 -0.195 N1     C6B 14 
C6B C6     C6     C 0 1 N N N 99.500  48.482 137.102 1.890  -0.196 1.123  C6     C6B 15 
C6B C5     C5     C 0 1 N N N 100.379 49.101 136.233 2.890  0.491  1.724  C5     C6B 16 
C6B C4     C4     C 0 1 N N N 101.376 49.900 136.762 4.024  0.849  0.966  C4     C6B 17 
C6B N4     N4     N 0 1 N N N 102.208 50.477 135.905 5.055  1.547  1.552  N4     C6B 18 
C6B N3     N3     N 0 1 N N N 101.488 50.080 138.103 4.092  0.507  -0.314 N3     C6B 19 
C6B C2     C2     C 0 1 N N N 100.655 49.497 138.996 3.103  -0.174 -0.889 C2     C6B 20 
C6B O2     O2     O 0 1 N N N 100.779 49.673 140.216 3.191  -0.481 -2.067 O2     C6B 21 
C6B HO1P   HO1P   H 0 0 N N N 94.910  44.231 138.801 -2.041 2.927  -1.047 HO1P   C6B 22 
C6B HO2P   HO2P   H 0 0 N N N 93.172  46.339 141.417 -3.780 2.747  1.582  HO2P   C6B 23 
C6B "H3'"  "H3'"  H 0 1 N N N 96.693  46.471 139.079 -2.200 -0.570 -1.656 "H3'"  C6B 24 
C6B "H2'"  "H2'"  H 0 1 N N N 96.719  49.171 139.131 -0.066 -0.481 -2.627 "H2'"  C6B 25 
C6B "HO2'" "HO2'" H 0 0 N N N 97.351  48.694 141.730 1.166  1.331  -1.767 "HO2'" C6B 26 
C6B "H4'"  "H4'"  H 0 1 N N N 98.052  45.308 140.513 -1.338 -2.756 -1.125 "H4'"  C6B 27 
C6B "H5'"  "H5'"  H 0 1 N N N 98.622  47.005 142.809 -1.916 -1.606 1.650  "H5'"  C6B 28 
C6B "H5'A" "H5'A" H 0 0 N N N 96.896  46.499 142.678 -3.184 -2.088 0.498  "H5'A" C6B 29 
C6B "HO5'" "HO5'" H 0 0 N N N 98.354  44.377 142.065 -2.612 -3.866 1.985  "HO5'" C6B 30 
C6B "H1'"  "H1'"  H 0 1 N N N 98.481  47.343 138.415 1.351  -1.959 -1.588 "H1'"  C6B 31 
C6B H6     H6     H 0 1 N N N 98.717  47.843 136.720 1.011  -0.481 1.682  H6     C6B 32 
C6B H5     H5     H 0 1 N N N 100.289 48.964 135.166 2.819  0.762  2.767  H5     C6B 33 
C6B HN4    HN4    H 0 1 N N N 102.878 51.024 136.407 5.003  1.795  2.488  HN4    C6B 34 
C6B HN4A   HN4A   H 0 0 N N N 102.171 50.380 134.910 5.834  1.791  1.028  HN4A   C6B 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C6B O1P   P      SING N N 1  
C6B P     O2P    SING N N 2  
C6B P     O3P    DOUB N N 3  
C6B P     "O3'"  SING N N 4  
C6B "O3'" "C3'"  SING N N 5  
C6B "C3'" "C2'"  SING N N 6  
C6B "C3'" "C4'"  SING N N 7  
C6B "C2'" "O2'"  SING N N 8  
C6B "C2'" "C1'"  SING N N 9  
C6B "C4'" "C5'"  SING N N 10 
C6B "C4'" "O4'"  SING N N 11 
C6B "C5'" "O5'"  SING N N 12 
C6B "O4'" "C1'"  SING N N 13 
C6B "C1'" N1     SING N N 14 
C6B N1    C6     SING N N 15 
C6B N1    C2     SING N N 16 
C6B C6    C5     DOUB N N 17 
C6B C5    C4     SING N N 18 
C6B C4    N4     SING N N 19 
C6B C4    N3     DOUB N N 20 
C6B N3    C2     SING N N 21 
C6B C2    O2     DOUB N N 22 
C6B O1P   HO1P   SING N N 23 
C6B O2P   HO2P   SING N N 24 
C6B "C3'" "H3'"  SING N N 25 
C6B "C2'" "H2'"  SING N N 26 
C6B "O2'" "HO2'" SING N N 27 
C6B "C4'" "H4'"  SING N N 28 
C6B "C5'" "H5'"  SING N N 29 
C6B "C5'" "H5'A" SING N N 30 
C6B "O5'" "HO5'" SING N N 31 
C6B "C1'" "H1'"  SING N N 32 
C6B C6    H6     SING N N 33 
C6B C5    H5     SING N N 34 
C6B N4    HN4    SING N N 35 
C6B N4    HN4A   SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C6B SMILES           ACDLabs              10.04 "O=C1N=C(N)C=CN1C2OC(C(OP(=O)(O)O)C2O)CO"                                                                                                            
C6B SMILES_CANONICAL CACTVS               3.341 "NC1=NC(=O)N(C=C1)[C@H]2O[C@@H](CO)[C@@H](O[P](O)(O)=O)[C@H]2O"                                                                                      
C6B SMILES           CACTVS               3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O[P](O)(O)=O)[CH]2O"                                                                                            
C6B SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@@H]2[C@@H]([C@@H]([C@@H](O2)CO)OP(=O)(O)O)O"                                                                                    
C6B SMILES           "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)OP(=O)(O)O)O"                                                                                                        
C6B InChI            InChI                1.03  "InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-6(14)7(4(3-13)19-8)20-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6+,7+,8-/m0/s1" 
C6B InChIKey         InChI                1.03  UOOOPKANIPLQPU-IHBLQFBFSA-N                                                                                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C6B "SYSTEMATIC NAME" ACDLabs              10.04 "4-amino-1-(3-O-phosphono-beta-L-lyxofuranosyl)pyrimidin-2(1H)-one"                                            
C6B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,4R,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C6B "Create component"  2008-11-30 PDBJ 
C6B "Modify descriptor" 2011-06-04 RCSB 
# 
