data_C3B
#

_chem_comp.id                                   C3B
_chem_comp.name                                 "4-amino-1-beta-D-glucopyranosylpyrimidin-2(1H)-one"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C10 H15 N3 O6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;1-D-glucopyranosyl-cytosine; 4-amino-1-beta-D-glucosylpyrimidin-2(1H)-one; 4-amino-1-D-glucosylpyrimidin-2(1H)-one;
4-amino-1-glucosylpyrimidin-2(1H)-one
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-11-16
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       273.243
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    C3B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3BD8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  C3B  1-D-glucopyranosyl-cytosine                     PDB  ?  
2  C3B  "4-amino-1-beta-D-glucosylpyrimidin-2(1H)-one"  PDB  ?  
3  C3B  "4-amino-1-D-glucosylpyrimidin-2(1H)-one"       PDB  ?  
4  C3B  "4-amino-1-glucosylpyrimidin-2(1H)-one"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
C3B  C1    "C1'"   C  0  1  N  N  R  33.455  22.950  27.832   0.085  -0.134   0.673  C1    C3B   1  
C3B  C2    "C2'"   C  0  1  N  N  R  33.831  23.144  26.326   0.608  -1.405  -0.002  C2    C3B   2  
C3B  O2    "O2'"   O  0  1  N  N  N  33.984  24.564  26.026  -0.026  -2.548   0.575  O2    C3B   3  
C3B  C3    "C3'"   C  0  1  N  N  S  32.696  22.515  25.466   2.122  -1.500   0.208  C3    C3B   4  
C3B  O3    "O3'"   O  0  1  N  N  N  32.992  22.644  24.070   2.630  -2.644  -0.481  O3    C3B   5  
C3B  C4    "C4'"   C  0  1  N  N  S  32.578  21.062  25.823   2.783  -0.233  -0.345  C4    C3B   6  
C3B  O4    "O4'"   O  0  1  N  N  N  31.533  20.481  25.054   4.188  -0.278  -0.090  O4    C3B   7  
C3B  C5    "C5'"   C  0  1  N  N  R  32.284  20.883  27.353   2.177   0.992   0.343  C5    C3B   8  
C3B  O5    "O5'"   O  0  1  N  N  N  33.291  21.496  28.212   0.763   1.003   0.134  O5    C3B   9  
C3B  C6    "C6'"   C  0  1  N  N  N  32.182  19.384  27.833   2.789   2.264  -0.248  C6    C3B  10  
C3B  O6    "O6'"   O  0  1  N  N  N  33.323  18.611  27.276   2.310   3.402   0.472  O6    C3B  11  
C3B  N1    N1      N  0  1  N  N  N  34.427  23.456  28.803  -1.354  -0.007   0.427  N1    C3B  12  
C3B  C2A   C2      C  0  1  N  N  N  33.786  24.035  29.888  -1.804   0.182  -0.826  C2A   C3B  13  
C3B  O2A   O2      O  0  1  N  N  N  32.504  24.137  30.049  -1.007   0.245  -1.748  O2A   C3B  14  
C3B  N3    N3      N  0  1  N  N  N  34.598  24.571  30.933  -3.107   0.300  -1.078  N3    C3B  15  
C3B  C4A   C4      C  0  1  N  N  N  35.935  24.551  30.942  -3.996   0.235  -0.095  C4A   C3B  16  
C3B  N4    N4      N  0  1  N  N  N  36.599  25.053  31.938  -5.338   0.358  -0.367  N4    C3B  17  
C3B  C5A   C5      C  0  1  N  N  N  36.676  23.925  29.765  -3.556   0.038   1.230  C5A   C3B  18  
C3B  C6A   C6      C  0  1  N  N  N  35.884  23.403  28.745  -2.228  -0.086   1.469  C6A   C3B  19  
C3B  H1    "H1'"   H  0  1  N  N  N  32.521  23.528  27.889   0.267  -0.191   1.746  H1    C3B  20  
C3B  H2    "H2'"   H  0  1  N  N  N  34.788  22.651  26.099   0.389  -1.367  -1.069  H2    C3B  21  
C3B  HO2   "HO2'"  H  0  1  N  Y  N  34.017  25.058  26.837   0.258  -3.390   0.195  HO2   C3B  22  
C3B  H3    "H3'"   H  0  1  N  N  N  31.750  23.038  25.669   2.338  -1.589   1.273  H3    C3B  23  
C3B  HO3   "HO3'"  H  0  1  N  Y  N  32.181  22.673  23.575   3.585  -2.766  -0.391  HO3   C3B  24  
C3B  H4    "H4'"   H  0  1  N  N  N  33.531  20.559  25.601   2.610  -0.172  -1.420  H4    C3B  25  
C3B  HO4   "HO4'"  H  0  1  N  Y  N  30.769  20.351  25.604   4.638  -1.033  -0.493  HO4   C3B  26  
C3B  H5    "H5'"   H  0  1  N  N  N  31.309  21.382  27.452   2.386   0.950   1.411  H5    C3B  27  
C3B  H61   "H6'"   H  0  1  N  N  N  32.214  19.347  28.932   3.875   2.215  -0.169  H61   C3B  28  
C3B  H62   "H6'A"  H  0  1  N  N  N  31.235  18.948  27.481   2.504   2.352  -1.296  H62   C3B  29  
C3B  HO6   "HO6'"  H  0  1  N  Y  N  33.174  18.446  26.352   2.658   4.245   0.152  HO6   C3B  30  
C3B  HN4   HN4     H  0  1  N  N  N  37.585  24.962  31.797  -5.638   0.493  -1.280  HN4   C3B  31  
C3B  HN4A  HN4A    H  0  0  N  N  N  36.180  25.476  32.741  -5.986   0.310   0.354  HN4A  C3B  32  
C3B  H5A   H5      H  0  1  N  N  N  37.755  23.889  29.725  -4.266  -0.017   2.041  H5A   C3B  33  
C3B  H6    H6      H  0  1  N  N  N  36.360  22.947  27.889  -1.867  -0.243   2.475  H6    C3B  34  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
C3B  C1   C2    SING  N  N   1  
C3B  C1   O5    SING  N  N   2  
C3B  C1   N1    SING  N  N   3  
C3B  C2   O2    SING  N  N   4  
C3B  C2   C3    SING  N  N   5  
C3B  C3   O3    SING  N  N   6  
C3B  C3   C4    SING  N  N   7  
C3B  C4   O4    SING  N  N   8  
C3B  C4   C5    SING  N  N   9  
C3B  C5   O5    SING  N  N  10  
C3B  C5   C6    SING  N  N  11  
C3B  C6   O6    SING  N  N  12  
C3B  N1   C2A   SING  N  N  13  
C3B  N1   C6A   SING  N  N  14  
C3B  C2A  O2A   DOUB  N  N  15  
C3B  C2A  N3    SING  N  N  16  
C3B  N3   C4A   DOUB  N  N  17  
C3B  C4A  N4    SING  N  N  18  
C3B  C4A  C5A   SING  N  N  19  
C3B  C5A  C6A   DOUB  N  N  20  
C3B  C1   H1    SING  N  N  21  
C3B  C2   H2    SING  N  N  22  
C3B  O2   HO2   SING  N  N  23  
C3B  C3   H3    SING  N  N  24  
C3B  O3   HO3   SING  N  N  25  
C3B  C4   H4    SING  N  N  26  
C3B  O4   HO4   SING  N  N  27  
C3B  C5   H5    SING  N  N  28  
C3B  C6   H61   SING  N  N  29  
C3B  C6   H62   SING  N  N  30  
C3B  O6   HO6   SING  N  N  31  
C3B  N4   HN4   SING  N  N  32  
C3B  N4   HN4A  SING  N  N  33  
C3B  C5A  H5A   SING  N  N  34  
C3B  C6A  H6    SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
C3B  SMILES            ACDLabs               10.04  "O=C1N=C(N)C=CN1C2OC(C(O)C(O)C2O)CO"  
C3B  SMILES_CANONICAL  CACTVS                3.341  "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O"  
C3B  SMILES            CACTVS                3.341  "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O"  
C3B  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O"  
C3B  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=CN(C(=O)N=C1N)C2C(C(C(C(O2)CO)O)O)O"  
C3B  InChI             InChI                 1.03   "InChI=1S/C10H15N3O6/c11-5-1-2-13(10(18)12-5)9-8(17)7(16)6(15)4(3-14)19-9/h1-2,4,6-9,14-17H,3H2,(H2,11,12,18)/t4-,6-,7+,8-,9-/m1/s1"  
C3B  InChIKey          InChI                 1.03   YYUQXKHCNLFJNF-DDIGBBAMSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
C3B  "SYSTEMATIC NAME"  ACDLabs               10.04  "4-amino-1-beta-D-glucopyranosylpyrimidin-2(1H)-one"  
C3B  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "4-amino-1-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]pyrimidin-2-one"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
C3B  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
C3B  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
C3B  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
C3B  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
C3B  "Create component"          2007-11-16  PDBJ  
C3B  "Modify descriptor"         2011-06-04  RCSB  
C3B  "Other modification"        2020-07-03  RCSB  
C3B  "Modify synonyms"           2020-07-17  RCSB  
C3B  "Modify internal type"      2020-07-17  RCSB  
C3B  "Modify linking type"       2020-07-17  RCSB  
C3B  "Modify atom id"            2020-07-17  RCSB  
C3B  "Modify component atom id"  2020-07-17  RCSB  
C3B  "Modify leaving atom flag"  2020-07-17  RCSB  
##
