data_BDB
# 
_chem_comp.id                                    BDB 
_chem_comp.name                                  
;4,4'-BIPHENYLDIBORONIC ACID
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H12 B2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2001-11-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        241.843 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BDB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KE3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BDB B1   B1   B 0 1 N N N N N N 26.297 5.009  16.401 0.000  -0.000 5.076  B1   BDB 1  
BDB OB1  OB1  O 0 1 N N N N N N 25.308 3.933  16.716 1.155  -0.424 5.785  OB1  BDB 2  
BDB OB2  OB2  O 0 1 N N N N N N 26.428 5.911  17.551 -1.153 0.422  5.787  OB2  BDB 3  
BDB CP1  CP1  C 0 1 Y N N N N N 25.793 5.776  15.166 -0.000 -0.000 3.506  CP1  BDB 4  
BDB CP2  CP2  C 0 1 Y N N N N N 25.489 5.045  14.044 -1.135 0.415  2.810  CP2  BDB 5  
BDB CP3  CP3  C 0 1 Y N N N N N 24.935 5.627  12.961 -1.137 0.415  1.433  CP3  BDB 6  
BDB CP4  CP4  C 0 1 Y N N N N N 24.651 7.019  12.965 -0.003 -0.000 0.734  CP4  BDB 7  
BDB CP5  CP5  C 0 1 Y N N N N N 25.001 7.777  14.128 1.132  -0.415 1.431  CP5  BDB 8  
BDB CP6  CP6  C 0 1 Y N N N N N 25.562 7.143  15.203 1.134  -0.411 2.808  CP6  BDB 9  
BDB CB1  CB1  C 0 1 Y N N N N N 23.935 7.619  11.803 -0.004 -0.000 -0.747 CB1  BDB 10 
BDB CB2  CB2  C 0 1 Y N N N N N 24.226 7.223  10.512 1.133  0.404  -1.446 CB2  BDB 11 
BDB CB3  CB3  C 0 1 Y N N N N N 23.517 7.705  9.455  1.131  0.403  -2.824 CB3  BDB 12 
BDB CB4  CB4  C 0 1 Y N N N N N 22.461 8.629  9.673  -0.006 -0.002 -3.520 CB4  BDB 13 
BDB CB5  CB5  C 0 1 Y N N N N N 22.185 9.044  10.995 -1.144 -0.407 -2.821 CB5  BDB 14 
BDB CB6  CB6  C 0 1 Y N N N N N 22.918 8.538  12.024 -1.141 -0.411 -1.444 CB6  BDB 15 
BDB B2   B2   B 0 1 N N N N N N 21.648 9.132  8.542  -0.008 -0.003 -5.090 B2   BDB 16 
BDB OH1  OH1  O 0 1 N N N N N N 22.071 10.195 7.638  -1.167 -0.416 -5.798 OH1  BDB 17 
BDB OH2  OH2  O 0 1 N N N N N N 20.313 8.622  8.197  1.149  0.409  -5.801 OH2  BDB 18 
BDB HO11 1HO1 H 0 0 N N N N N N 25.223 3.349  15.972 0.949  -0.348 6.727  HO11 BDB 19 
BDB HO21 1HO2 H 0 0 N N N N N N 27.056 6.595  17.351 -0.945 0.346  6.729  HO21 BDB 20 
BDB HC21 1HC2 H 0 0 N N N N N N 25.695 3.962  14.012 -2.013 0.737  3.351  HC21 BDB 21 
BDB HC31 1HC3 H 0 0 N N N N N N 24.720 4.981  12.094 -2.015 0.737  0.894  HC31 BDB 22 
BDB HC51 1HC5 H 0 0 N N N N N N 24.836 8.865  14.197 2.009  -0.738 0.890  HC51 BDB 23 
BDB HC61 1HC6 H 0 0 N N N N N N 25.827 7.732  16.097 2.013  -0.732 3.347  HC61 BDB 24 
BDB HB21 1HB2 H 0 0 N N N N N N 25.042 6.506  10.321 2.014  0.719  -0.907 HB21 BDB 25 
BDB HB31 1HB3 H 0 0 N N N N N N 23.792 7.355  8.446  2.012  0.718  -3.365 HB31 BDB 26 
BDB HB51 1HB5 H 0 0 N N N N N N 21.389 9.771  11.226 -2.025 -0.721 -3.360 HB51 BDB 27 
BDB HB61 1HB6 H 0 0 N N N N N N 22.685 8.876  13.048 -2.022 -0.725 -0.903 HB61 BDB 28 
BDB HH11 1HH1 H 0 0 N N N N N N 21.550 10.518 6.913  -0.959 -0.342 -6.740 HH11 BDB 29 
BDB HH21 1HH2 H 0 0 N N N N N N 19.792 8.945  7.472  1.814  0.646  -5.140 HH21 BDB 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BDB B1  OB1  SING N N 1  
BDB B1  OB2  SING N N 2  
BDB B1  CP1  SING N N 3  
BDB OB1 HO11 SING N N 4  
BDB OB2 HO21 SING N N 5  
BDB CP1 CP2  DOUB Y N 6  
BDB CP1 CP6  SING Y N 7  
BDB CP2 CP3  SING Y N 8  
BDB CP2 HC21 SING N N 9  
BDB CP3 CP4  DOUB Y N 10 
BDB CP3 HC31 SING N N 11 
BDB CP4 CP5  SING Y N 12 
BDB CP4 CB1  SING Y N 13 
BDB CP5 CP6  DOUB Y N 14 
BDB CP5 HC51 SING N N 15 
BDB CP6 HC61 SING N N 16 
BDB CB1 CB2  DOUB Y N 17 
BDB CB1 CB6  SING Y N 18 
BDB CB2 CB3  SING Y N 19 
BDB CB2 HB21 SING N N 20 
BDB CB3 CB4  DOUB Y N 21 
BDB CB3 HB31 SING N N 22 
BDB CB4 CB5  SING Y N 23 
BDB CB4 B2   SING N N 24 
BDB CB5 CB6  DOUB Y N 25 
BDB CB5 HB51 SING N N 26 
BDB CB6 HB61 SING N N 27 
BDB B2  OH1  SING N N 28 
BDB B2  OH2  SING N N 29 
BDB OH1 HH11 SING N N 30 
BDB OH2 HH21 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BDB SMILES           ACDLabs              10.04 "OB(O)c1ccc(cc1)c2ccc(cc2)B(O)O"                                                      
BDB SMILES_CANONICAL CACTVS               3.341 "OB(O)c1ccc(cc1)c2ccc(cc2)B(O)O"                                                      
BDB SMILES           CACTVS               3.341 "OB(O)c1ccc(cc1)c2ccc(cc2)B(O)O"                                                      
BDB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "B(c1ccc(cc1)c2ccc(cc2)B(O)O)(O)O"                                                    
BDB SMILES           "OpenEye OEToolkits" 1.5.0 "B(c1ccc(cc1)c2ccc(cc2)B(O)O)(O)O"                                                    
BDB InChI            InChI                1.03  "InChI=1S/C12H12B2O4/c15-13(16)11-5-1-9(2-6-11)10-3-7-12(8-4-10)14(17)18/h1-8,15-18H" 
BDB InChIKey         InChI                1.03  SLHKDOGTVUCXKX-UHFFFAOYSA-N                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BDB "SYSTEMATIC NAME" ACDLabs              10.04 
;biphenyl-4,4'-diyldiboronic acid
;
BDB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-[4-(dihydroxyboranyl)phenyl]phenyl]boronic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BDB "Create component"     2001-11-20 RCSB 
BDB "Modify aromatic_flag" 2011-06-04 RCSB 
BDB "Modify descriptor"    2011-06-04 RCSB 
BDB "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            BDB 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
