data_B9B
#

_chem_comp.id                                   B9B
_chem_comp.name                                 "6-propyl, guanosine-5'-monophosphate"
_chem_comp.type                                 "RNA linking"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C13 H20 N5 O8 P"
_chem_comp.mon_nstd_parent_comp_id              G
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2017-09-25
_chem_comp.pdbx_modified_date                   2019-04-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       405.300
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    B9B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6EK0
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
B9B  C2     C1   C  0  1  Y  N  N  252.802  244.959  316.755  -3.887   1.571  -1.083  C2     B9B   1  
B9B  C5     C2   C  0  1  Y  N  N  250.504  243.657  317.513  -2.796  -0.539   0.173  C5     B9B   2  
B9B  C6     C3   C  0  1  Y  N  N  251.699  242.908  317.133  -4.180  -0.476  -0.050  C6     B9B   3  
B9B  C8     C4   C  0  1  Y  N  N  248.626  244.516  318.102  -0.743  -1.002   0.698  C8     B9B   4  
B9B  "C1'"  C5   C  0  1  N  N  R  249.033  246.949  317.881   0.483   1.018  -0.192  "C1'"  B9B   5  
B9B  "C2'"  C6   C  0  1  N  N  R  247.660  247.161  317.275   0.721   2.016   0.963  "C2'"  B9B   6  
B9B  "C3'"  C7   C  0  1  N  N  S  247.190  248.415  317.991   2.258   2.061   1.109  "C3'"  B9B   7  
B9B  C4     C8   C  0  1  Y  N  N  250.593  245.106  317.450  -1.999   0.528  -0.276  C4     B9B   8  
B9B  "C4'"  C9   C  0  1  N  N  R  247.868  248.322  319.357   2.767   1.084   0.026  "C4'"  B9B   9  
B9B  "C5'"  C10  C  0  1  N  N  N  246.966  247.879  320.476   3.985   0.310   0.536  "C5'"  B9B  10  
B9B  N1     N1   N  0  1  Y  N  N  252.778  243.611  316.755  -4.675   0.585  -0.675  N1     B9B  11  
B9B  N2     N2   N  0  1  N  N  N  253.923  245.590  316.351  -4.454   2.659  -1.725  N2     B9B  12  
B9B  N3     N3   N  0  1  Y  N  N  251.728  245.701  317.066  -2.577   1.553  -0.893  N3     B9B  13  
B9B  N7     N4   N  0  1  Y  N  N  249.272  243.351  317.926  -1.967  -1.438   0.758  N7     B9B  14  
B9B  N9     N5   N  0  1  Y  N  N  249.425  245.550  317.836  -0.710   0.208   0.069  N9     B9B  15  
B9B  "O2'"  O1   O  0  1  N  N  N  247.737  247.280  315.871   0.213   3.307   0.621  "O2'"  B9B  16  
B9B  "O3'"  O2   O  0  1  N  N  N  247.661  249.555  317.290   2.747   3.381   0.863  "O3'"  B9B  17  
B9B  "O4'"  O3   O  0  1  N  N  N  248.934  247.356  319.220   1.662   0.184  -0.208  "O4'"  B9B  18  
B9B  "O5'"  O4   O  0  1  N  N  N  246.485  246.561  320.258   4.510  -0.500  -0.518  "O5'"  B9B  19  
B9B  O6     O5   O  0  1  N  N  N  251.699  241.548  317.173  -4.994  -1.477   0.362  O6     B9B  20  
B9B  OP1    O6   O  0  1  N  N  N  246.113  244.184  320.949   6.936  -0.647   0.162  OP1    B9B  21  
B9B  OP2    O7   O  0  1  N  N  N  245.120  246.202  322.279   5.458  -2.614   0.725  OP2    B9B  22  
B9B  P      P1   P  0  1  N  N  N  246.228  245.583  321.475   5.797  -1.450  -0.335  P      B9B  23  
B9B  C61    C11  C  0  1  N  N  N  250.862  240.798  316.307  -6.390  -1.332   0.093  C61    B9B  24  
B9B  C62    C12  C  0  1  N  N  N  250.691  239.408  316.889  -7.142  -2.552   0.628  C62    B9B  25  
B9B  C63    C13  C  0  1  N  N  N  249.854  239.482  318.139  -8.637  -2.396   0.341  C63    B9B  26  
B9B  H1     H1   H  0  1  N  N  N  247.597  244.603  318.417   0.120  -1.521   1.089  H1     B9B  27  
B9B  H2     H2   H  0  1  N  N  N  249.767  247.564  317.339   0.381   1.549  -1.138  H2     B9B  28  
B9B  H3     H3   H  0  1  N  N  N  247.008  246.321  317.557   0.260   1.654   1.882  H3     B9B  29  
B9B  H4     H4   H  0  1  N  N  N  246.095  248.415  318.100   2.557   1.721   2.101  H4     B9B  30  
B9B  H5     H5   H  0  1  N  N  N  248.289  249.307  319.607   3.017   1.626  -0.886  H5     B9B  31  
B9B  H6     H6   H  0  1  N  N  N  247.528  247.904  321.421   4.749   1.014   0.868  H6     B9B  32  
B9B  H7     H7   H  0  1  N  N  N  246.110  248.567  320.540   3.688  -0.325   1.370  H7     B9B  33  
B9B  H8     H8   H  0  1  N  N  N  254.613  244.913  316.095  -5.413   2.692  -1.869  H8     B9B  34  
B9B  H9     H9   H  0  1  N  N  N  253.714  246.168  315.562  -3.893   3.389  -2.030  H9     B9B  35  
B9B  H10    H10  H  0  1  N  N  N  246.866  247.412  315.516   0.336   3.973   1.311  H10    B9B  36  
B9B  H11    H11  H  0  1  N  N  N  247.370  250.343  317.734   2.410   4.046   1.478  H11    B9B  37  
B9B  H13    H13  H  0  1  N  N  N  244.408  245.579  322.370   4.719  -3.181   0.464  H13    B9B  38  
B9B  H14    H14  H  0  1  N  N  N  251.325  240.729  315.311  -6.762  -0.432   0.583  H14    B9B  39  
B9B  H15    H15  H  0  1  N  N  N  249.881  241.288  316.222  -6.546  -1.251  -0.983  H15    B9B  40  
B9B  H16    H16  H  0  1  N  N  N  250.192  238.762  316.152  -6.770  -3.452   0.139  H16    B9B  41  
B9B  H17    H17  H  0  1  N  N  N  251.678  238.990  317.134  -6.986  -2.632   1.704  H17    B9B  42  
B9B  H18    H18  H  0  1  N  N  N  249.731  238.473  318.559  -9.009  -1.496   0.830  H18    B9B  43  
B9B  H19    H19  H  0  1  N  N  N  250.353  240.128  318.876  -8.793  -2.315  -0.735  H19    B9B  44  
B9B  H20    H20  H  0  1  N  N  N  248.866  239.900  317.895  -9.173  -3.265   0.722  H20    B9B  45  
B9B  OP3    OP3  O  0  1  N  N  N  247.559  245.713  322.352   6.182  -2.110  -1.752  OP3    B9B  46  
B9B  H12    H12  H  0  1  N  N  N  248.013  244.878  322.366   6.950  -2.697  -1.717  H12    B9B  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
B9B  "O2'"  "C2'"  SING  N  N   1  
B9B  C61    C62    SING  N  N   2  
B9B  C61    O6     SING  N  N   3  
B9B  N2     C2     SING  N  N   4  
B9B  C2     N1     DOUB  Y  N   5  
B9B  C2     N3     SING  Y  N   6  
B9B  N1     C6     SING  Y  N   7  
B9B  C62    C63    SING  N  N   8  
B9B  N3     C4     DOUB  Y  N   9  
B9B  C6     O6     SING  N  N  10  
B9B  C6     C5     DOUB  Y  N  11  
B9B  "C2'"  "C1'"  SING  N  N  12  
B9B  "C2'"  "C3'"  SING  N  N  13  
B9B  "O3'"  "C3'"  SING  N  N  14  
B9B  C4     C5     SING  Y  N  15  
B9B  C4     N9     SING  Y  N  16  
B9B  C5     N7     SING  Y  N  17  
B9B  N9     "C1'"  SING  N  N  18  
B9B  N9     C8     SING  Y  N  19  
B9B  "C1'"  "O4'"  SING  N  N  20  
B9B  N7     C8     DOUB  Y  N  21  
B9B  "C3'"  "C4'"  SING  N  N  22  
B9B  "O4'"  "C4'"  SING  N  N  23  
B9B  "C4'"  "C5'"  SING  N  N  24  
B9B  "O5'"  "C5'"  SING  N  N  25  
B9B  "O5'"  P      SING  N  N  26  
B9B  OP1    P      DOUB  N  N  27  
B9B  P      OP2    SING  N  N  28  
B9B  C8     H1     SING  N  N  29  
B9B  "C1'"  H2     SING  N  N  30  
B9B  "C2'"  H3     SING  N  N  31  
B9B  "C3'"  H4     SING  N  N  32  
B9B  "C4'"  H5     SING  N  N  33  
B9B  "C5'"  H6     SING  N  N  34  
B9B  "C5'"  H7     SING  N  N  35  
B9B  N2     H8     SING  N  N  36  
B9B  N2     H9     SING  N  N  37  
B9B  "O2'"  H10    SING  N  N  38  
B9B  "O3'"  H11    SING  N  N  39  
B9B  OP2    H13    SING  N  N  40  
B9B  C61    H14    SING  N  N  41  
B9B  C61    H15    SING  N  N  42  
B9B  C62    H16    SING  N  N  43  
B9B  C62    H17    SING  N  N  44  
B9B  C63    H18    SING  N  N  45  
B9B  C63    H19    SING  N  N  46  
B9B  C63    H20    SING  N  N  47  
B9B  P      OP3    SING  N  N  48  
B9B  OP3    H12    SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
B9B  InChI             InChI                 1.03   "InChI=1S/C13H20N5O8P/c1-2-3-24-11-7-10(16-13(14)17-11)18(5-15-7)12-9(20)8(19)6(26-12)4-25-27(21,22)23/h5-6,8-9,12,19-20H,2-4H2,1H3,(H2,14,16,17)(H2,21,22,23)/t6-,8-,9-,12-/m1/s1"  
B9B  InChIKey          InChI                 1.03   BEBGGMIXLKQJTH-WOUKDFQISA-N  
B9B  SMILES_CANONICAL  CACTVS                3.385  "CCCOc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O"  
B9B  SMILES            CACTVS                3.385  "CCCOc1nc(N)nc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O"  
B9B  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "CCCOc1c2c(nc(n1)N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
B9B  SMILES            "OpenEye OEToolkits"  2.0.6  "CCCOc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          B9B
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-propoxy-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
B9B  "Create component"        2017-09-25  EBI   
B9B  "Initial release"         2018-01-24  RCSB  
B9B  "Modify one letter code"  2019-04-29  EBI   
##
