data_92B
# 
_chem_comp.id                                    92B 
_chem_comp.name                                  "(3~{S},7~{R},10~{R},13~{S})-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H16 N2 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-04-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        236.267 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     92B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5N9C 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
92B N   N2  N 0 1 N N N Y Y N 9.801  20.024 -13.817 2.480  1.608  -0.351 N2  92B 1  
92B C22 C22 C 0 1 N N N N N N 10.607 20.275 -15.026 3.796  1.138  0.160  C22 92B 2  
92B C23 C23 C 0 1 N N N N N N 9.943  21.387 -15.760 3.561  -0.248 0.807  C23 92B 3  
92B C8  C8  C 0 1 N N R N N N 8.522  20.888 -15.610 2.058  -0.500 0.625  C8  92B 4  
92B CA  C21 C 0 1 N N S Y N N 8.463  20.584 -14.121 1.696  0.381  -0.564 C21 92B 5  
92B C25 C25 C 0 1 N N N Y N N 7.395  19.681 -13.946 0.261  0.543  -0.782 C25 92B 6  
92B O7  O7  O 0 1 N N N N N N 7.596  18.462 -13.813 -0.099 1.641  -1.150 O7  92B 7  
92B C7  C7  C 0 1 N N N N N N 7.562  21.851 -15.959 1.663  -1.902 0.468  C7  92B 8  
92B C6  C6  C 0 1 N N N N N N 6.361  22.125 -15.313 0.617  -2.407 -0.029 C6  92B 9  
92B C5  C5  C 0 1 N N R N N N 5.781  21.506 -14.201 -0.618 -1.823 -0.599 C5  92B 10 
92B C4  C4  C 0 1 N N N N N N 4.262  21.431 -14.393 -1.814 -2.286 0.274  C4  92B 11 
92B C3  C3  C 0 1 N N N N N N 3.920  20.337 -13.393 -2.897 -1.223 0.005  C3  92B 12 
92B C2  C2  C 0 1 N N S Y N N 4.906  19.287 -13.877 -2.134 -0.003 -0.529 C2  92B 13 
92B N1  N1  N 0 1 N N N Y N N 6.145  20.081 -14.022 -0.702 -0.366 -0.627 N1  92B 14 
92B C   C1  C 0 1 N N N Y N Y 4.545  18.677 -15.105 -2.303 1.158  0.417  C1  92B 15 
92B O   O2  O 0 1 N N N Y N Y 5.295  18.819 -16.099 -1.337 1.640  0.959  O2  92B 16 
92B OXT OXT O 0 1 N Y N Y N Y 3.508  17.989 -15.088 -3.526 1.655  0.657  OXT 92B 17 
92B H   H1  H 0 1 N Y N Y Y N 9.738  19.043 -13.635 2.028  2.214  0.318  H1  92B 18 
92B H26 H26 H 0 1 N N N N N N 10.640 19.372 -15.654 4.503  1.048  -0.664 H26 92B 19 
92B H27 H27 H 0 1 N N N N N N 11.631 20.564 -14.746 4.178  1.838  0.903  H27 92B 20 
92B H28 H28 H 0 1 N N N N N N 10.260 21.444 -16.812 4.141  -1.013 0.290  H28 92B 21 
92B H29 H29 H 0 1 N N N N N N 10.099 22.362 -15.276 3.819  -0.223 1.866  H29 92B 22 
92B H30 H30 H 0 1 N N N N N N 8.389  19.960 -16.185 1.542  -0.110 1.503  H30 92B 23 
92B HA  H31 H 0 1 N N N Y N N 8.300  21.514 -13.557 2.108  -0.100 -1.452 H31 92B 24 
92B H32 H32 H 0 1 N N N N N N 7.782  22.449 -16.831 2.382  -2.620 0.835  H32 92B 25 
92B H33 H33 H 0 1 N N N N N N 5.790  22.939 -15.734 0.627  -3.487 -0.041 H33 92B 26 
92B H34 H34 H 0 1 N N N N N N 6.000  22.065 -13.279 -0.762 -2.208 -1.608 H34 92B 27 
92B H42 H42 H 0 1 N N N N N N 3.772  22.383 -14.140 -2.159 -3.272 -0.040 H42 92B 28 
92B H35 H35 H 0 1 N N N N N N 3.995  21.143 -15.420 -1.539 -2.294 1.329  H35 92B 29 
92B H36 H36 H 0 1 N N N N N N 4.116  20.645 -12.356 -3.604 -1.584 -0.742 H36 92B 30 
92B H37 H37 H 0 1 N N N Y N N 5.041  18.528 -13.092 -2.514 0.267  -1.515 H37 92B 31 
92B HXT H3  H 0 1 N Y N Y N Y 3.377  17.592 -15.941 -3.584 2.400  1.272  H3  92B 32 
92B H1  H2  H 0 1 N N N N N N 2.876  20.001 -13.484 -3.418 -0.971 0.928  H2  92B 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
92B O   C   DOUB N N 1  
92B C7  C8  SING N N 2  
92B C23 C8  SING N N 3  
92B C23 C22 SING N N 4  
92B C8  CA  SING N N 5  
92B C6  C5  SING N N 6  
92B C   OXT SING N N 7  
92B C   C2  SING N N 8  
92B C22 N   SING N N 9  
92B C4  C5  SING N N 10 
92B C4  C3  SING N N 11 
92B C5  N1  SING N N 12 
92B CA  C25 SING N N 13 
92B CA  N   SING N N 14 
92B N1  C25 SING N N 15 
92B N1  C2  SING N N 16 
92B C25 O7  DOUB N N 17 
92B C2  C3  SING N N 18 
92B N   H   SING N N 19 
92B C22 H26 SING N N 20 
92B C22 H27 SING N N 21 
92B C23 H28 SING N N 22 
92B C23 H29 SING N N 23 
92B C8  H30 SING N N 24 
92B CA  HA  SING N N 25 
92B C7  H32 SING N N 26 
92B C6  H33 SING N N 27 
92B C5  H34 SING N N 28 
92B C4  H42 SING N N 29 
92B C4  H35 SING N N 30 
92B C3  H36 SING N N 31 
92B C2  H37 SING N N 32 
92B OXT HXT SING N N 33 
92B C3  H1  SING N N 34 
92B C6  C7  DOUB N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
92B InChI            InChI                1.03  "InChI=1S/C12H16N2O3/c15-11-10-7(5-6-13-10)1-2-8-3-4-9(12(16)17)14(8)11/h1-2,7-10,13H,3-6H2,(H,16,17)/t7-,8-,9-,10-/m0/s1" 
92B InChIKey         InChI                1.03  XEXQDYRISOKILW-XKNYDFJKSA-N                                                                                                
92B SMILES_CANONICAL CACTVS               3.385 "OC(=O)[C@@H]1CC[C@@H]2C=C[C@H]3CCN[C@@H]3C(=O)N12"                                                                        
92B SMILES           CACTVS               3.385 "OC(=O)[CH]1CC[CH]2C=C[CH]3CCN[CH]3C(=O)N12"                                                                               
92B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[C@H](N2[C@H]1C=C[C@H]3CCN[C@@H]3C2=O)C(=O)O"                                                                          
92B SMILES           "OpenEye OEToolkits" 2.0.6 "C1CC(N2C1C=CC3CCNC3C2=O)C(=O)O"                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           92B 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(3~{S},7~{R},10~{R},13~{S})-2-oxidanylidene-1,4-diazatricyclo[8.3.0.0^{3,7}]tridec-8-ene-13-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
92B "Create component" 2017-04-03 EBI  
92B "Initial release"  2017-06-14 RCSB 
92B "Modify backbone"  2023-11-03 PDBE 
92B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            92B 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
