data_8ZB
# 
_chem_comp.id                                    8ZB 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-propyl-oxolane-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-30 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        279.295 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8ZB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LGP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8ZB C24 C1  C 0 1 N N N N N N 52.275 32.406 130.324 5.646  -2.452 -0.329 C24 8ZB 1  
8ZB C28 C2  C 0 1 N N N N N N 51.691 33.558 131.098 4.477  -1.609 -0.843 C28 8ZB 2  
8ZB C31 C3  C 0 1 N N N N N N 51.475 34.752 130.189 4.042  -0.624 0.244  C31 8ZB 3  
8ZB C36 C4  C 0 1 N N R N N N 50.993 35.987 130.922 2.873  0.219  -0.270 C36 8ZB 4  
8ZB C38 C5  C 0 1 N N R N N N 50.051 37.843 129.860 0.584  0.340  -0.395 C38 8ZB 5  
8ZB C39 C6  C 0 1 N N R N N N 48.949 36.804 130.039 0.957  1.386  0.679  C39 8ZB 6  
8ZB C40 C7  C 0 1 N N S N N N 49.505 36.040 131.239 2.498  1.305  0.763  C40 8ZB 7  
8ZB C49 C8  C 0 1 Y N N N N N 50.091 37.736 127.333 -0.766 -1.530 0.630  C49 8ZB 8  
8ZB C50 C9  C 0 1 Y N N N N N 50.438 39.763 126.806 -2.796 -0.881 0.231  C50 8ZB 9  
8ZB C51 C10 C 0 1 Y N N N N N 50.380 39.728 128.191 -1.934 0.097  -0.293 C51 8ZB 10 
8ZB C53 C11 C 0 1 Y N N N N N 50.737 41.899 128.346 -3.759 1.309  -0.989 C53 8ZB 11 
8ZB C55 C12 C 0 1 Y N N N N N 50.666 41.016 126.209 -4.181 -0.682 0.100  C55 8ZB 12 
8ZB N47 N1  N 0 1 Y N N N N N 50.158 38.413 128.521 -0.660 -0.342 -0.031 N47 8ZB 13 
8ZB N48 N2  N 0 1 Y N N N N N 50.255 38.495 126.276 -2.020 -1.844 0.783  N48 8ZB 14 
8ZB N52 N3  N 0 1 Y N N N N N 50.523 40.768 129.025 -2.454 1.165  -0.889 N52 8ZB 15 
8ZB N54 N4  N 0 1 Y N N N N N 50.810 42.083 127.024 -4.608 0.417  -0.512 N54 8ZB 16 
8ZB N57 N5  N 0 1 N N N N N N 50.742 41.204 124.889 -5.079 -1.611 0.596  N57 8ZB 17 
8ZB O37 O1  O 0 1 N N N N N N 51.262 37.176 130.151 1.686  -0.593 -0.400 O37 8ZB 18 
8ZB O41 O2  O 0 1 N N N N N N 47.697 37.432 130.288 0.547  2.692  0.270  O41 8ZB 19 
8ZB O42 O3  O 0 1 N N N N N N 49.270 36.713 132.471 3.086  2.558  0.408  O42 8ZB 20 
8ZB H2  H1  H 0 1 N N N N N N 52.425 31.549 130.998 6.481  -1.799 -0.075 H2  8ZB 21 
8ZB H1  H2  H 0 1 N N N N N N 51.586 32.120 129.516 5.334  -3.004 0.557  H1  8ZB 22 
8ZB H29 H3  H 0 1 N N N N N N 53.241 32.707 129.893 5.956  -3.153 -1.104 H29 8ZB 23 
8ZB H28 H4  H 0 1 N N N N N N 52.382 33.839 131.906 4.790  -1.057 -1.730 H28 8ZB 24 
8ZB H33 H5  H 0 1 N N N N N N 50.727 33.252 131.530 3.642  -2.262 -1.097 H33 8ZB 25 
8ZB H35 H6  H 0 1 N N N N N N 50.725 34.482 129.431 3.730  -1.176 1.130  H35 8ZB 26 
8ZB H31 H7  H 0 1 N N N N N N 52.428 34.990 129.694 4.877  0.029  0.498  H31 8ZB 27 
8ZB H61 H8  H 0 1 N N N N N N 51.541 36.050 131.873 3.128  0.677  -1.226 H61 8ZB 28 
8ZB H62 H9  H 0 1 N N N N N N 49.886 38.652 130.586 0.486  0.816  -1.370 H62 8ZB 29 
8ZB H44 H10 H 0 1 N N N N N N 48.904 36.145 129.159 0.507  1.128  1.637  H44 8ZB 30 
8ZB H43 H11 H 0 1 N N N N N N 49.091 35.021 131.256 2.811  1.005  1.763  H43 8ZB 31 
8ZB H58 H12 H 0 1 N N N N N N 49.918 36.672 127.272 0.068  -2.124 0.973  H58 8ZB 32 
8ZB H56 H13 H 0 1 N N N N N N 50.869 42.786 128.948 -4.149 2.188  -1.479 H56 8ZB 33 
8ZB H60 H14 H 0 1 N N N N N N 50.905 42.172 124.699 -4.755 -2.410 1.040  H60 8ZB 34 
8ZB H59 H15 H 0 1 N N N N N N 51.495 40.660 124.518 -6.033 -1.463 0.499  H59 8ZB 35 
8ZB H46 H16 H 0 1 N N N N N N 47.026 36.769 130.396 0.757  3.388  0.908  H46 8ZB 36 
8ZB H45 H17 H 0 1 N N N N N N 49.632 36.202 133.185 2.883  3.276  1.023  H45 8ZB 37 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8ZB N57 C55 SING N N 1  
8ZB C55 C50 DOUB Y N 2  
8ZB C55 N54 SING Y N 3  
8ZB N48 C50 SING Y N 4  
8ZB N48 C49 DOUB Y N 5  
8ZB C50 C51 SING Y N 6  
8ZB N54 C53 DOUB Y N 7  
8ZB C49 N47 SING Y N 8  
8ZB C51 N47 SING Y N 9  
8ZB C51 N52 DOUB Y N 10 
8ZB C53 N52 SING Y N 11 
8ZB N47 C38 SING N N 12 
8ZB C38 C39 SING N N 13 
8ZB C38 O37 SING N N 14 
8ZB C39 O41 SING N N 15 
8ZB C39 C40 SING N N 16 
8ZB O37 C36 SING N N 17 
8ZB C31 C36 SING N N 18 
8ZB C31 C28 SING N N 19 
8ZB C24 C28 SING N N 20 
8ZB C36 C40 SING N N 21 
8ZB C40 O42 SING N N 22 
8ZB C24 H2  SING N N 23 
8ZB C24 H1  SING N N 24 
8ZB C24 H29 SING N N 25 
8ZB C28 H28 SING N N 26 
8ZB C28 H33 SING N N 27 
8ZB C31 H35 SING N N 28 
8ZB C31 H31 SING N N 29 
8ZB C36 H61 SING N N 30 
8ZB C38 H62 SING N N 31 
8ZB C39 H44 SING N N 32 
8ZB C40 H43 SING N N 33 
8ZB C49 H58 SING N N 34 
8ZB C53 H56 SING N N 35 
8ZB N57 H60 SING N N 36 
8ZB N57 H59 SING N N 37 
8ZB O41 H46 SING N N 38 
8ZB O42 H45 SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8ZB InChI            InChI                1.03  "InChI=1S/C12H17N5O3/c1-2-3-6-8(18)9(19)12(20-6)17-5-16-7-10(13)14-4-15-11(7)17/h4-6,8-9,12,18-19H,2-3H2,1H3,(H2,13,14,15)/t6-,8-,9-,12-/m1/s1" 
8ZB InChIKey         InChI                1.03  BKDAOQOLDUJANJ-WOUKDFQISA-N                                                                                                                     
8ZB SMILES_CANONICAL CACTVS               3.385 "CCC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"                                                                                             
8ZB SMILES           CACTVS               3.385 "CCC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"                                                                                                  
8ZB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                            
8ZB SMILES           "OpenEye OEToolkits" 2.0.6 "CCCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           8ZB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-propyl-oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8ZB "Create component" 2017-03-30 EBI  
8ZB "Initial release"  2017-04-05 RCSB 
8ZB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8ZB 
_pdbx_chem_comp_pcm.modified_residue_id                ARG 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C24 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NH2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
