data_79B
# 
_chem_comp.id                                    79B 
_chem_comp.name                                  "11-[(2~{R})-2-[(2-pyridin-3-ylquinazolin-4-yl)amino]-2,3-dihydro-1~{H}-inden-5-yl]undec-10-ynoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H34 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        518.649 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     79B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LVX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
79B C2  C1  C 0 1 N N N N N N -0.710 -28.583 -24.221 14.596  -0.778 0.468  C2  79B 1  
79B C3  C2  C 0 1 N N N N N N -0.697 -27.134 -23.758 13.180  -0.947 0.957  C3  79B 2  
79B C4  C3  C 0 1 N N N N N N 0.652  -26.631 -23.256 12.219  -0.263 -0.018 C4  79B 3  
79B C5  C4  C 0 1 N N N N N N 0.909  -27.076 -21.818 10.782  -0.435 0.478  C5  79B 4  
79B C6  C5  C 0 1 N N N N N N 1.771  -28.325 -21.782 9.821   0.248  -0.497 C6  79B 5  
79B C7  C6  C 0 1 N N N N N N 1.362  -29.264 -20.663 8.384   0.077  -0.001 C7  79B 6  
79B C8  C7  C 0 1 N N N N N N 2.375  -30.400 -20.650 7.423   0.760  -0.976 C8  79B 7  
79B C11 C8  C 0 1 N N N N N N 1.720  -33.349 -21.501 3.642   1.107  -0.979 C11 79B 8  
79B C12 C9  C 0 1 N N N N N N 1.113  -33.814 -22.399 2.539   0.975  -0.598 C12 79B 9  
79B C15 C10 C 0 1 Y N N N N N -0.669 -36.375 -24.023 -0.360  -0.042 1.481  C15 79B 10 
79B C16 C11 C 0 1 Y N N N N N -0.577 -35.960 -25.328 -1.413  0.492  0.754  C16 79B 11 
79B C17 C12 C 0 1 N N N N N N -1.144 -36.671 -26.502 -2.904  0.453  1.019  C17 79B 12 
79B C18 C13 C 0 1 N N R N N N -0.339 -36.061 -27.650 -3.563  0.817  -0.328 C18 79B 13 
79B C19 C14 C 0 1 N N N N N N 0.055  -34.652 -27.172 -2.472  1.666  -1.013 C19 79B 14 
79B C21 C15 C 0 1 Y N N N N N 0.716  -34.037 -24.729 0.133   1.355  -0.859 C21 79B 15 
79B N22 N1  N 0 1 N N N N N N -1.158 -36.093 -28.895 -4.780  1.605  -0.116 N22 79B 16 
79B C23 C16 C 0 1 Y N N N N N -0.536 -36.647 -30.018 -6.001  0.974  -0.013 C23 79B 17 
79B C27 C17 C 0 1 Y N N N N N -0.570 -37.349 -32.308 -8.417  1.017  0.278  C27 79B 18 
79B C30 C18 C 0 1 Y N N N N N -3.236 -36.556 -32.618 -8.356  3.782  0.486  C30 79B 19 
79B C31 C19 C 0 1 Y N N N N N -2.589 -36.401 -31.392 -7.181  3.115  0.294  C31 79B 20 
79B C32 C20 C 0 1 Y N N N N N -1.245 -36.786 -31.222 -7.190  1.720  0.186  C32 79B 21 
79B C33 C21 C 0 1 Y N N N N N 2.813  -37.987 -30.927 -7.301  -2.443 -0.118 C33 79B 22 
79B C34 C22 C 0 1 Y N N N N N 3.353  -38.930 -31.801 -8.514  -3.135 -0.039 C34 79B 23 
79B C35 C23 C 0 1 Y N N N N N 4.703  -39.214 -31.732 -8.492  -4.514 -0.154 C35 79B 24 
79B C36 C24 C 0 1 Y N N N N N 5.505  -38.540 -30.811 -7.282  -5.158 -0.342 C36 79B 25 
79B C38 C25 C 0 1 Y N N N N N 3.659  -37.318 -30.045 -6.125  -3.165 -0.309 C38 79B 26 
79B O1  O1  O 0 1 N N N N N N 0.123  -28.982 -25.018 14.814  -0.169 -0.552 O1  79B 27 
79B C9  C26 C 0 1 N N N N N N 1.910  -31.554 -19.793 5.986   0.589  -0.481 C9  79B 28 
79B C10 C27 C 0 1 N N N N N N 2.419  -32.887 -20.276 5.025   1.272  -1.456 C10 79B 29 
79B C13 C28 C 0 1 Y N N N N N 0.613  -34.441 -23.392 1.194   0.815  -0.134 C13 79B 30 
79B C20 C29 C 0 1 Y N N N N N 0.098  -34.835 -25.686 -1.165  1.189  -0.415 C20 79B 31 
79B C14 C30 C 0 1 Y N N N N N -0.069 -35.606 -23.043 0.938   0.117  1.047  C14 79B 32 
79B C29 C31 C 0 1 Y N N N N N -2.530 -37.110 -33.700 -9.563  3.094  0.570  C29 79B 33 
79B C28 C32 C 0 1 Y N N N N N -1.208 -37.513 -33.542 -9.606  1.735  0.470  C28 79B 34 
79B N26 N2  N 0 1 Y N N N N N 0.713  -37.726 -32.172 -8.405  -0.318 0.173  N26 79B 35 
79B C25 C33 C 0 1 Y N N N N N 1.381  -37.600 -30.998 -7.268  -0.965 -0.007 C25 79B 36 
79B N24 N3  N 0 1 Y N N N N N 0.759  -37.050 -29.945 -6.095  -0.344 -0.105 N24 79B 37 
79B N37 N4  N 0 1 Y N N N N N 4.977  -37.611 -29.999 -6.154  -4.478 -0.413 N37 79B 38 
79B H2  H2  H 0 1 N N N N N N -1.003 -26.502 -24.605 12.941  -2.008 1.018  H2  79B 39 
79B H3  H3  H 0 1 N N N N N N -1.426 -27.030 -22.941 13.080  -0.494 1.943  H3  79B 40 
79B H4  H4  H 0 1 N N N N N N 1.447  -27.031 -23.903 12.458  0.798  -0.080 H4  79B 41 
79B H5  H5  H 0 1 N N N N N N 0.663  -25.532 -23.299 12.320  -0.716 -1.005 H5  79B 42 
79B H6  H6  H 0 1 N N N N N N 1.424  -26.268 -21.278 10.543  -1.497 0.539  H6  79B 43 
79B H7  H7  H 0 1 N N N N N N -0.053 -27.289 -21.330 10.682  0.018  1.464  H7  79B 44 
79B H8  H8  H 0 1 N N N N N N 1.673  -28.852 -22.742 10.060  1.310  -0.559 H8  79B 45 
79B H9  H9  H 0 1 N N N N N N 2.820  -28.029 -21.632 9.922   -0.205 -1.484 H9  79B 46 
79B H10 H10 H 0 1 N N N N N N 1.376  -28.733 -19.699 8.145   -0.985 0.060  H10 79B 47 
79B H11 H11 H 0 1 N N N N N N 0.353  -29.659 -20.850 8.284   0.530  0.985  H11 79B 48 
79B H12 H12 H 0 1 N N N N N N 2.523  -30.758 -21.680 7.662   1.822  -1.038 H12 79B 49 
79B H13 H13 H 0 1 N N N N N N 3.329  -30.023 -20.253 7.523   0.307  -1.963 H13 79B 50 
79B H14 H14 H 0 1 N N N N N N -1.198 -37.281 -23.767 -0.559  -0.582 2.395  H14 79B 51 
79B H15 H15 H 0 1 N N N N N N -2.219 -36.468 -26.613 -3.207  -0.547 1.331  H15 79B 52 
79B H16 H16 H 0 1 N N N N N N -0.982 -37.757 -26.431 -3.171  1.184  1.782  H16 79B 53 
79B H17 H17 H 0 1 N N N N N N 0.576  -36.654 -27.798 -3.778  -0.080 -0.909 H17 79B 54 
79B H18 H18 H 0 1 N N N N N N 1.037  -34.355 -27.568 -2.480  1.495  -2.090 H18 79B 55 
79B H19 H19 H 0 1 N N N N N N -0.699 -33.905 -27.462 -2.624  2.723  -0.797 H19 79B 56 
79B H20 H20 H 0 1 N N N N N N 1.254  -33.142 -25.006 0.326   1.896  -1.773 H20 79B 57 
79B H21 H21 H 0 1 N N N N N N -1.414 -35.152 -29.118 -4.726  2.571  -0.047 H21 79B 58 
79B H22 H22 H 0 1 N N N N N N -4.266 -36.254 -32.734 -8.349  4.858  0.569  H22 79B 59 
79B H23 H23 H 0 1 N N N N N N -3.129 -35.978 -30.558 -6.251  3.659  0.225  H23 79B 60 
79B H24 H24 H 0 1 N N N N N N 2.724  -39.431 -32.522 -9.444  -2.606 0.108  H24 79B 61 
79B H25 H25 H 0 1 N N N N N N 5.136  -39.955 -32.388 -9.409  -5.081 -0.098 H25 79B 62 
79B H26 H26 H 0 1 N N N N N N 6.559  -38.768 -30.751 -7.261  -6.234 -0.432 H26 79B 63 
79B H27 H27 H 0 1 N N N N N N 3.257  -36.558 -29.392 -5.181  -2.644 -0.372 H27 79B 64 
79B H28 H28 H 0 1 N N N N N N 2.267  -31.394 -18.765 5.747   -0.473 -0.419 H28 79B 65 
79B H29 H29 H 0 1 N N N N N N 0.810  -31.575 -19.800 5.885   1.041  0.506  H29 79B 66 
79B H30 H30 H 0 1 N N N N N N 2.268  -33.632 -19.481 5.125   0.819  -2.442 H30 79B 67 
79B H31 H31 H 0 1 N N N N N N 3.493  -32.797 -20.495 5.264   2.333  -1.517 H31 79B 68 
79B H32 H32 H 0 1 N N N N N N -0.129 -35.908 -22.008 1.755   -0.298 1.620  H32 79B 69 
79B H33 H33 H 0 1 N N N N N N -3.016 -37.223 -34.658 -10.480 3.645  0.718  H33 79B 70 
79B H34 H34 H 0 1 N N N N N N -0.674 -37.952 -34.372 -10.550 1.215  0.537  H34 79B 71 
79B O2  O2  O 0 1 N Y N N N N -1.678 -29.373 -23.738 15.615  -1.299 1.170  O2  79B 72 
79B H1  H1  H 0 1 N N N N N N -1.594 -30.242 -24.112 16.505  -1.165 0.817  H1  79B 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
79B C29 C28 DOUB Y N 1  
79B C29 C30 SING Y N 2  
79B C28 C27 SING Y N 3  
79B C30 C31 DOUB Y N 4  
79B C27 N26 DOUB Y N 5  
79B C27 C32 SING Y N 6  
79B N26 C25 SING Y N 7  
79B C34 C35 DOUB Y N 8  
79B C34 C33 SING Y N 9  
79B C35 C36 SING Y N 10 
79B C31 C32 SING Y N 11 
79B C32 C23 DOUB Y N 12 
79B C25 C33 SING N N 13 
79B C25 N24 DOUB Y N 14 
79B C33 C38 DOUB Y N 15 
79B C36 N37 DOUB Y N 16 
79B C38 N37 SING Y N 17 
79B C23 N24 SING Y N 18 
79B C23 N22 SING N N 19 
79B N22 C18 SING N N 20 
79B C18 C19 SING N N 21 
79B C18 C17 SING N N 22 
79B C19 C20 SING N N 23 
79B C17 C16 SING N N 24 
79B C20 C16 DOUB Y N 25 
79B C20 C21 SING Y N 26 
79B C16 C15 SING Y N 27 
79B O1  C2  DOUB N N 28 
79B C21 C13 DOUB Y N 29 
79B C2  C3  SING N N 30 
79B C15 C14 DOUB Y N 31 
79B C3  C4  SING N N 32 
79B C13 C14 SING Y N 33 
79B C13 C12 SING N N 34 
79B C4  C5  SING N N 35 
79B C12 C11 TRIP N N 36 
79B C5  C6  SING N N 37 
79B C6  C7  SING N N 38 
79B C11 C10 SING N N 39 
79B C7  C8  SING N N 40 
79B C8  C9  SING N N 41 
79B C10 C9  SING N N 42 
79B C3  H2  SING N N 43 
79B C3  H3  SING N N 44 
79B C4  H4  SING N N 45 
79B C4  H5  SING N N 46 
79B C5  H6  SING N N 47 
79B C5  H7  SING N N 48 
79B C6  H8  SING N N 49 
79B C6  H9  SING N N 50 
79B C7  H10 SING N N 51 
79B C7  H11 SING N N 52 
79B C8  H12 SING N N 53 
79B C8  H13 SING N N 54 
79B C15 H14 SING N N 55 
79B C17 H15 SING N N 56 
79B C17 H16 SING N N 57 
79B C18 H17 SING N N 58 
79B C19 H18 SING N N 59 
79B C19 H19 SING N N 60 
79B C21 H20 SING N N 61 
79B N22 H21 SING N N 62 
79B C30 H22 SING N N 63 
79B C31 H23 SING N N 64 
79B C34 H24 SING N N 65 
79B C35 H25 SING N N 66 
79B C36 H26 SING N N 67 
79B C38 H27 SING N N 68 
79B C9  H28 SING N N 69 
79B C9  H29 SING N N 70 
79B C10 H30 SING N N 71 
79B C10 H31 SING N N 72 
79B C14 H32 SING N N 73 
79B C29 H33 SING N N 74 
79B C28 H34 SING N N 75 
79B C2  O2  SING N N 76 
79B O2  H1  SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
79B InChI            InChI                1.03  "InChI=1S/C33H34N4O2/c38-31(39)16-8-6-4-2-1-3-5-7-12-24-17-18-25-21-28(22-27(25)20-24)35-33-29-14-9-10-15-30(29)36-32(37-33)26-13-11-19-34-23-26/h9-11,13-15,17-20,23,28H,1-6,8,16,21-22H2,(H,38,39)(H,35,36,37)/t28-/m1/s1" 
79B InChIKey         InChI                1.03  OOVVDXXXFLHSBX-MUUNZHRXSA-N                                                                                                                                                                                                  
79B SMILES_CANONICAL CACTVS               3.385 "OC(=O)CCCCCCCCC#Cc1ccc2C[C@H](Cc2c1)Nc3nc(nc4ccccc34)c5cccnc5"                                                                                                                                                              
79B SMILES           CACTVS               3.385 "OC(=O)CCCCCCCCC#Cc1ccc2C[CH](Cc2c1)Nc3nc(nc4ccccc34)c5cccnc5"                                                                                                                                                               
79B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "c1ccc2c(c1)c(nc(n2)c3cccnc3)N[C@@H]4Cc5ccc(cc5C4)C#CCCCCCCCCC(=O)O"                                                                                                                                                         
79B SMILES           "OpenEye OEToolkits" 2.0.5 "c1ccc2c(c1)c(nc(n2)c3cccnc3)NC4Cc5ccc(cc5C4)C#CCCCCCCCCC(=O)O"                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           79B 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "11-[(2~{R})-2-[(2-pyridin-3-ylquinazolin-4-yl)amino]-2,3-dihydro-1~{H}-inden-5-yl]undec-10-ynoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
79B "Create component" 2016-09-15 EBI  
79B "Initial release"  2017-10-25 RCSB 
79B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            79B 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
