data_6WB
#

_chem_comp.id                                   6WB
_chem_comp.name                                 "2-[[(2~{S})-2,3-bis(oxidanyl)propyl]-[2-(6-oxidanylidene-1~{H}-purin-9-yl)ethyl]amino]ethylphosphonic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H20 N5 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-((2,3-Dihydroxypropyl)(2-(hypoxanthin-9-yl)ethyl)amino)ethylphosphonic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-07-08
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       361.291
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6WB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KNT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6WB  C4   C1   C  0  1  Y  N  N  26.932   -9.628  -12.436   3.327   0.255  -0.279  C4   6WB   1  
6WB  C5   C2   C  0  1  Y  N  N  26.120  -10.181  -11.397   4.438   0.999   0.128  C5   6WB   2  
6WB  C6   C3   C  0  1  N  N  N  25.838   -9.357  -10.250   5.494   0.326   0.793  C6   6WB   3  
6WB  C8   C4   C  0  1  Y  N  N  26.379  -11.675  -13.002   3.067   2.369  -0.838  C8   6WB   4  
6WB  N1   N1   N  0  1  N  N  N  26.352   -8.101  -10.218   5.371  -1.004   1.002  N1   6WB   5  
6WB  N3   N2   N  0  1  N  N  N  27.411   -8.336  -12.312   3.285  -1.062  -0.032  N3   6WB   6  
6WB  O6   O1   O  0  1  N  N  N  25.162   -9.770   -9.349   6.484   0.930   1.167  O6   6WB   7  
6WB  C2   C5   C  0  1  N  N  N  27.115   -7.618  -11.227   4.265  -1.666   0.581  C2   6WB   8  
6WB  N7   N3   N  0  1  Y  N  N  25.808  -11.464  -11.810   4.221   2.282  -0.242  N7   6WB   9  
6WB  N9   N4   N  0  1  Y  N  N  27.076  -10.590  -13.419   2.476   1.142  -0.879  N9   6WB  10  
6WB  CAL  C6   C  0  1  N  N  N  27.797  -10.485  -14.648   1.171   0.828  -1.468  CAL  6WB  11  
6WB  CAJ  C7   C  0  1  N  N  N  29.320  -10.818  -14.496   0.099   0.859  -0.377  CAJ  6WB  12  
6WB  NAV  N5   N  0  1  N  N  N  30.001  -10.783  -15.744  -1.209   0.545  -0.967  NAV  6WB  13  
6WB  CAK  C8   C  0  1  N  N  N  29.668  -11.960  -16.556  -2.290   0.761   0.004  CAK  6WB  14  
6WB  CAM  C9   C  0  1  N  N  N  30.370  -13.202  -16.011  -3.641   0.664  -0.708  CAM  6WB  15  
6WB  PAX  P1   P  0  1  N  N  N  29.988  -14.684  -17.020  -4.985   0.801   0.517  PAX  6WB  16  
6WB  OAE  O2   O  0  1  N  N  N  30.580  -14.522  -18.400  -4.797  -0.220   1.572  OAE  6WB  17  
6WB  OAF  O3   O  0  1  N  N  N  30.564  -15.865  -16.396  -4.958   2.268   1.180  OAF  6WB  18  
6WB  OAB  O4   O  0  1  N  N  N  28.474  -14.856  -17.104  -6.401   0.568  -0.211  OAB  6WB  19  
6WB  CAN  C10  C  0  1  N  N  N  31.445  -10.767  -15.535  -1.235  -0.829  -1.486  CAN  6WB  20  
6WB  CAU  C11  C  0  1  N  N  S  32.071   -9.543  -16.242  -1.125  -1.816  -0.323  CAU  6WB  21  
6WB  OAD  O5   O  0  1  N  N  N  33.505   -9.583  -16.084   0.178  -1.724   0.258  OAD  6WB  22  
6WB  CAI  C12  C  0  1  N  N  N  31.573   -8.346  -15.607  -1.354  -3.239  -0.837  CAI  6WB  23  
6WB  OAC  O6   O  0  1  N  N  N  32.192   -8.282  -14.318  -1.366  -4.148   0.265  OAC  6WB  24  
6WB  H1   H1   H  0  1  N  N  N  26.295  -12.595  -13.562   2.640   3.278  -1.236  H1   6WB  25  
6WB  H2   H2   H  0  1  N  N  N  26.162   -7.517   -9.429   6.079  -1.488   1.455  H2   6WB  26  
6WB  H3   H3   H  0  1  N  N  N  27.499   -6.612  -11.151   4.192  -2.729   0.760  H3   6WB  27  
6WB  H4   H4   H  0  1  N  N  N  27.699   -9.456  -15.025   0.932   1.564  -2.234  H4   6WB  28  
6WB  H5   H5   H  0  1  N  N  N  27.356  -11.184  -15.374   1.204  -0.166  -1.916  H5   6WB  29  
6WB  H6   H6   H  0  1  N  N  N  29.422  -11.825  -14.064   0.338   0.123   0.390  H6   6WB  30  
6WB  H7   H7   H  0  1  N  N  N  29.779  -10.081  -13.820   0.066   1.853   0.071  H7   6WB  31  
6WB  H9   H9   H  0  1  N  N  N  29.991  -11.787  -17.593  -2.235   0.003   0.785  H9   6WB  32  
6WB  H10  H10  H  0  1  N  N  N  28.580  -12.120  -16.533  -2.185   1.750   0.450  H10  6WB  33  
6WB  H11  H11  H  0  1  N  N  N  30.036  -13.377  -14.978  -3.729   1.471  -1.435  H11  6WB  34  
6WB  H12  H12  H  0  1  N  N  N  31.457  -13.032  -16.022  -3.714  -0.296  -1.220  H12  6WB  35  
6WB  H13  H13  H  0  1  N  N  N  31.182  -16.270  -16.993  -5.075   2.989   0.546  H13  6WB  36  
6WB  H14  H14  H  0  1  N  N  N  28.202  -14.827  -18.014  -7.163   0.627   0.382  H14  6WB  37  
6WB  H15  H15  H  0  1  N  N  N  31.882  -11.688  -15.947  -2.171  -0.999  -2.019  H15  6WB  38  
6WB  H16  H16  H  0  1  N  N  N  31.656  -10.712  -14.457  -0.398  -0.976  -2.168  H16  6WB  39  
6WB  H17  H17  H  0  1  N  N  N  31.797   -9.560  -17.307  -1.876  -1.577   0.430  H17  6WB  40  
6WB  H18  H18  H  0  1  N  N  N  33.848  -10.367  -16.498   0.899  -1.859  -0.371  H18  6WB  41  
6WB  H19  H19  H  0  1  N  N  N  31.841   -7.460  -16.202  -2.310  -3.287  -1.359  H19  6WB  42  
6WB  H20  H20  H  0  1  N  N  N  30.479   -8.399  -15.501  -0.552  -3.511  -1.523  H20  6WB  43  
6WB  H21  H21  H  0  1  N  N  N  31.892   -7.505  -13.860  -1.507  -5.071   0.013  H21  6WB  44  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6WB  OAE  PAX  DOUB  N  N   1  
6WB  OAB  PAX  SING  N  N   2  
6WB  PAX  OAF  SING  N  N   3  
6WB  PAX  CAM  SING  N  N   4  
6WB  CAK  CAM  SING  N  N   5  
6WB  CAK  NAV  SING  N  N   6  
6WB  CAU  OAD  SING  N  N   7  
6WB  CAU  CAI  SING  N  N   8  
6WB  CAU  CAN  SING  N  N   9  
6WB  NAV  CAN  SING  N  N  10  
6WB  NAV  CAJ  SING  N  N  11  
6WB  CAI  OAC  SING  N  N  12  
6WB  CAL  CAJ  SING  N  N  13  
6WB  CAL  N9   SING  N  N  14  
6WB  N9   C8   SING  Y  N  15  
6WB  N9   C4   SING  Y  N  16  
6WB  C8   N7   DOUB  Y  N  17  
6WB  C4   N3   SING  N  N  18  
6WB  C4   C5   DOUB  Y  N  19  
6WB  N3   C2   DOUB  N  N  20  
6WB  N7   C5   SING  Y  N  21  
6WB  C5   C6   SING  N  N  22  
6WB  C2   N1   SING  N  N  23  
6WB  C6   N1   SING  N  N  24  
6WB  C6   O6   DOUB  N  N  25  
6WB  C8   H1   SING  N  N  26  
6WB  N1   H2   SING  N  N  27  
6WB  C2   H3   SING  N  N  28  
6WB  CAL  H4   SING  N  N  29  
6WB  CAL  H5   SING  N  N  30  
6WB  CAJ  H6   SING  N  N  31  
6WB  CAJ  H7   SING  N  N  32  
6WB  CAK  H9   SING  N  N  33  
6WB  CAK  H10  SING  N  N  34  
6WB  CAM  H11  SING  N  N  35  
6WB  CAM  H12  SING  N  N  36  
6WB  OAF  H13  SING  N  N  37  
6WB  OAB  H14  SING  N  N  38  
6WB  CAN  H15  SING  N  N  39  
6WB  CAN  H16  SING  N  N  40  
6WB  CAU  H17  SING  N  N  41  
6WB  OAD  H18  SING  N  N  42  
6WB  CAI  H19  SING  N  N  43  
6WB  CAI  H20  SING  N  N  44  
6WB  OAC  H21  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6WB  InChI             InChI                 1.03   "InChI=1S/C12H20N5O6P/c18-6-9(19)5-16(3-4-24(21,22)23)1-2-17-8-15-10-11(17)13-7-14-12(10)20/h7-9,18-19H,1-6H2,(H,13,14,20)(H2,21,22,23)/t9-/m0/s1"  
6WB  InChIKey          InChI                 1.03   XBILBXZMSMIUBY-VIFPVBQESA-N  
6WB  SMILES_CANONICAL  CACTVS                3.385  "OC[C@@H](O)CN(CCn1cnc2C(=O)NC=Nc12)CC[P](O)(O)=O"  
6WB  SMILES            CACTVS                3.385  "OC[CH](O)CN(CCn1cnc2C(=O)NC=Nc12)CC[P](O)(O)=O"  
6WB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.5  "c1nc2c(n1CCN(CCP(=O)(O)O)C[C@@H](CO)O)N=CNC2=O"  
6WB  SMILES            "OpenEye OEToolkits"  2.0.5  "c1nc2c(n1CCN(CCP(=O)(O)O)CC(CO)O)N=CNC2=O"  
#
_pdbx_chem_comp_identifier.comp_id          6WB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.5
_pdbx_chem_comp_identifier.identifier       "2-[[(2~{S})-2,3-bis(oxidanyl)propyl]-[2-(6-oxidanylidene-1~{H}-purin-9-yl)ethyl]amino]ethylphosphonic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6WB  "Create component"  2016-07-08  RCSB  
6WB  "Modify synonyms"   2016-07-18  RCSB  
6WB  "Initial release"   2017-07-19  RCSB  
6WB  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6WB
_pdbx_chem_comp_synonyms.name        "2-((2,3-Dihydroxypropyl)(2-(hypoxanthin-9-yl)ethyl)amino)ethylphosphonic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
