data_5NB
# 
_chem_comp.id                                    5NB 
_chem_comp.name                                  "5'-amino-8-bromo-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 Br N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-06 
_chem_comp.pdbx_modified_date                    2012-03-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        345.153 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5NB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3V8N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5NB "O2'" O2* O  0 1 N N N 18.201 8.064  13.110 -0.943 2.686  -1.442 O2* 5NB 1  
5NB "C2'" C2* C  0 1 N N R 19.119 8.832  13.848 -1.255 1.350  -1.040 C2* 5NB 2  
5NB "C3'" C3* C  0 1 N N S 19.464 8.151  15.164 -2.774 1.195  -0.808 C3* 5NB 3  
5NB "O3'" O3* O  0 1 N N N 18.480 7.207  15.504 -3.448 2.430  -1.060 O3* 5NB 4  
5NB "C4'" C4* C  0 1 N N R 19.444 9.254  16.193 -2.889 0.810  0.683  C4* 5NB 5  
5NB "C5'" C5* C  0 1 N N N 20.883 9.645  16.386 -4.013 -0.208 0.885  C5* 5NB 6  
5NB "N5'" N5* N  0 1 N N N 20.998 10.942 17.043 -4.185 -0.470 2.321  N5* 5NB 7  
5NB "O4'" O4* O  0 1 N N N 18.766 10.340 15.615 -1.612 0.222  1.012  O4* 5NB 8  
5NB "C1'" C1* C  0 1 N N R 18.398 10.069 14.262 -0.631 1.041  0.339  C1* 5NB 9  
5NB N9    N9  N  0 1 Y N N 18.832 11.212 13.477 0.624  0.303  0.177  N9  5NB 10 
5NB C8    C8  C  0 1 Y N N 18.028 12.141 13.033 0.750  -1.012 -0.159 C8  5NB 11 
5NB BR8   BR8 BR 0 0 N N N 16.191 12.122 13.320 -0.692 -2.189 -0.496 BR8 5NB 12 
5NB N7    N7  N  0 1 Y N N 18.687 13.065 12.380 2.010  -1.338 -0.215 N7  5NB 13 
5NB C5    C5  C  0 1 Y N N 19.948 12.725 12.407 2.769  -0.256 0.082  C5  5NB 14 
5NB C4    C4  C  0 1 Y N N 20.049 11.548 13.109 1.890  0.811  0.331  C4  5NB 15 
5NB N3    N3  N  0 1 Y N N 21.243 10.994 13.269 2.391  2.001  0.648  N3  5NB 16 
5NB C2    C2  C  0 1 Y N N 22.294 11.572 12.759 3.693  2.180  0.729  C2  5NB 17 
5NB N1    N1  N  0 1 Y N N 22.233 12.693 12.089 4.558  1.208  0.503  N1  5NB 18 
5NB C6    C6  C  0 1 Y N N 21.085 13.295 11.890 4.150  -0.014 0.176  C6  5NB 19 
5NB N6    N6  N  0 1 N N N 21.057 14.412 11.212 5.064  -1.026 -0.059 N6  5NB 20 
5NB H1    H1  H  0 1 N N N 18.618 7.260  12.823 -1.310 2.933  -2.302 H1  5NB 21 
5NB H2    H2  H  0 1 N N N 20.029 9.070  13.278 -0.905 0.637  -1.786 H2  5NB 22 
5NB H3    H3  H  0 1 N N N 20.465 7.699  15.107 -3.178 0.405  -1.441 H3  5NB 23 
5NB H4    H4  H  0 1 N N N 18.710 6.791  16.327 -3.357 2.750  -1.968 H4  5NB 24 
5NB H5    H5  H  0 1 N N N 18.989 8.915  17.136 -3.068 1.697  1.291  H5  5NB 25 
5NB H6    H6  H  0 1 N N N 21.381 8.884  17.006 -4.942 0.189  0.475  H6  5NB 26 
5NB H7    H7  H  0 1 N N N 21.375 9.697  15.403 -3.758 -1.137 0.375  H7  5NB 27 
5NB H8    H8  H  0 1 N N N 21.964 11.174 17.157 -4.358 0.386  2.826  H8  5NB 28 
5NB H9    H9  H  0 1 N N N 20.552 11.640 16.483 -4.922 -1.140 2.480  H9  5NB 29 
5NB H11   H11 H  0 1 N N N 17.312 9.924  14.169 -0.462 1.963  0.895  H11 5NB 30 
5NB H12   H12 H  0 1 N N N 23.258 11.104 12.896 4.067  3.159  0.989  H12 5NB 31 
5NB H13   H13 H  0 1 N N N 21.985 14.654 10.928 6.015  -0.848 0.015  H13 5NB 32 
5NB H14   H14 H  0 1 N N N 20.481 14.296 10.403 4.754  -1.914 -0.297 H14 5NB 33 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5NB N6    C6    SING N N 1  
5NB C6    N1    DOUB Y N 2  
5NB C6    C5    SING Y N 3  
5NB N1    C2    SING Y N 4  
5NB N7    C5    SING Y N 5  
5NB N7    C8    DOUB Y N 6  
5NB C5    C4    DOUB Y N 7  
5NB C2    N3    DOUB Y N 8  
5NB C8    BR8   SING N N 9  
5NB C8    N9    SING Y N 10 
5NB C4    N3    SING Y N 11 
5NB C4    N9    SING Y N 12 
5NB "O2'" "C2'" SING N N 13 
5NB N9    "C1'" SING N N 14 
5NB "C2'" "C1'" SING N N 15 
5NB "C2'" "C3'" SING N N 16 
5NB "C1'" "O4'" SING N N 17 
5NB "C3'" "O3'" SING N N 18 
5NB "C3'" "C4'" SING N N 19 
5NB "O4'" "C4'" SING N N 20 
5NB "C4'" "C5'" SING N N 21 
5NB "C5'" "N5'" SING N N 22 
5NB "O2'" H1    SING N N 23 
5NB "C2'" H2    SING N N 24 
5NB "C3'" H3    SING N N 25 
5NB "O3'" H4    SING N N 26 
5NB "C4'" H5    SING N N 27 
5NB "C5'" H6    SING N N 28 
5NB "C5'" H7    SING N N 29 
5NB "N5'" H8    SING N N 30 
5NB "N5'" H9    SING N N 31 
5NB "C1'" H11   SING N N 32 
5NB C2    H12   SING N N 33 
5NB N6    H13   SING N N 34 
5NB N6    H14   SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5NB SMILES           ACDLabs              12.01 "Brc2nc1c(ncnc1n2C3OC(C(O)C3O)CN)N"                                                                                                          
5NB InChI            InChI                1.03  "InChI=1S/C10H13BrN6O3/c11-10-16-4-7(13)14-2-15-8(4)17(10)9-6(19)5(18)3(1-12)20-9/h2-3,5-6,9,18-19H,1,12H2,(H2,13,14,15)/t3-,5-,6-,9-/m1/s1" 
5NB InChIKey         InChI                1.03  WSWAKFOKHOTDLO-UUOKFMHZSA-N                                                                                                                  
5NB SMILES_CANONICAL CACTVS               3.370 "NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2c(Br)nc3c(N)ncnc23"                                                                                       
5NB SMILES           CACTVS               3.370 "NC[CH]1O[CH]([CH](O)[CH]1O)n2c(Br)nc3c(N)ncnc23"                                                                                            
5NB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(c(n2)Br)[C@H]3[C@@H]([C@@H]([C@H](O3)CN)O)O)N"                                                                                
5NB SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc(c2c(n1)n(c(n2)Br)C3C(C(C(O3)CN)O)O)N"                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5NB "SYSTEMATIC NAME" ACDLabs              12.01 "5'-amino-8-bromo-5'-deoxyadenosine"                                               
5NB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S,4R,5R)-2-(aminomethyl)-5-(6-azanyl-8-bromanyl-purin-9-yl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5NB "Create component" 2012-01-06 RCSB 
# 
