data_4WB
# 
_chem_comp.id                                    4WB 
_chem_comp.name                                  "5-[[(2R)-2-(3-chlorophenyl)-1'-methyl-spiro[2H-indole-3,4'-piperidine]-1-yl]methyl]-N-oxidanyl-thiophene-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 Cl N3 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-07 
_chem_comp.pdbx_modified_date                    2022-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        468.011 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4WB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P2U 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4WB C7  C1  C  0 1 N N R -27.233 -0.200 31.639 1.341  -0.116 -1.324 C7  4WB 1  
4WB C1  C2  C  0 1 Y N N -26.986 3.155  33.151 2.093  1.692  1.871  C1  4WB 2  
4WB C2  C3  C  0 1 Y N N -28.084 3.975  33.429 1.289  1.740  2.995  C2  4WB 3  
4WB C3  C4  C  0 1 Y N N -29.380 3.467  33.398 0.009  1.218  2.951  C3  4WB 4  
4WB C4  C5  C  0 1 Y N N -29.624 2.151  33.049 -0.470 0.652  1.788  C4  4WB 5  
4WB C5  C6  C  0 1 Y N N -28.522 1.352  32.758 0.333  0.602  0.650  C5  4WB 6  
4WB C6  C7  C  0 1 Y N N -27.212 1.836  32.791 1.621  1.124  0.706  C6  4WB 7  
4WB N1  N1  N  0 1 N N N -28.485 -0.005 32.399 0.053  0.095  -0.626 N1  4WB 8  
4WB C8  C8  C  0 1 N N N -26.234 0.682  32.454 2.260  0.918  -0.647 C8  4WB 9  
4WB C9  C9  C  0 1 Y N N -26.827 -1.647 31.417 1.851  -1.515 -1.097 C9  4WB 10 
4WB C10 C10 C  0 1 Y N N -26.358 -2.038 30.172 1.695  -2.115 0.139  C10 4WB 11 
4WB C11 C11 C  0 1 Y N N -25.998 -3.354 29.952 2.163  -3.400 0.348  C11 4WB 12 
4WB C12 C12 C  0 1 Y N N -26.090 -4.314 30.946 2.787  -4.084 -0.680 C12 4WB 13 
4WB C13 C13 C  0 1 Y N N -26.550 -3.923 32.189 2.942  -3.484 -1.915 C13 4WB 14 
4WB C14 C14 C  0 1 Y N N -26.917 -2.602 32.425 2.470  -2.201 -2.125 C14 4WB 15 
4WB CL1 CL1 CL 0 0 N N N -25.412 -3.791 28.374 1.968  -4.153 1.900  CL1 4WB 16 
4WB C15 C15 C  0 1 N N N -25.029 1.035  31.562 2.272  2.218  -1.442 C15 4WB 17 
4WB C16 C16 C  0 1 N N N -25.714 0.092  33.775 3.670  0.360  -0.500 C16 4WB 18 
4WB C17 C17 C  0 1 N N N -24.704 1.015  34.433 4.571  1.420  0.141  C17 4WB 19 
4WB C18 C18 C  0 1 N N N -23.961 1.856  32.278 3.220  3.216  -0.770 C18 4WB 20 
4WB N2  N2  N  0 1 N N N -23.553 1.257  33.560 4.565  2.633  -0.687 N2  4WB 21 
4WB C19 C19 C  0 1 N N N -22.550 2.106  34.244 5.536  3.616  -0.188 C19 4WB 22 
4WB C20 C20 C  0 1 N N N -29.690 -0.735 32.038 -0.811 1.013  -1.380 C20 4WB 23 
4WB C21 C21 C  0 1 Y N N -29.991 -0.576 30.585 -2.192 1.013  -0.777 C21 4WB 24 
4WB C22 C22 C  0 1 Y N N -30.284 0.598  29.914 -2.594 1.839  0.196  C22 4WB 25 
4WB C23 C23 C  0 1 Y N N -30.341 0.425  28.507 -3.897 1.671  0.601  C23 4WB 26 
4WB C24 C24 C  0 1 Y N N -30.334 -0.928 28.155 -4.550 0.678  -0.074 C24 4WB 27 
4WB S1  S1  S  0 1 Y N N -29.956 -1.927 29.507 -3.453 -0.034 -1.250 S1  4WB 28 
4WB C25 C25 C  0 1 N N N -30.644 -1.536 26.818 -5.942 0.275  0.143  C25 4WB 29 
4WB N3  N3  N  0 1 N N N -31.258 -0.753 25.935 -6.477 -0.722 -0.589 N3  4WB 30 
4WB O1  O1  O  0 1 N N N -30.351 -2.704 26.566 -6.615 0.841  0.984  O1  4WB 31 
4WB O2  O2  O  0 1 N N N -31.340 -1.100 24.598 -7.822 -1.112 -0.379 O2  4WB 32 
4WB H1  H1  H  0 1 N N N -27.352 0.270  30.652 1.243  0.093  -2.390 H1  4WB 33 
4WB H2  H2  H  0 1 N N N -25.980 3.543  33.216 3.092  2.100  1.905  H2  4WB 34 
4WB H3  H3  H  0 1 N N N -27.925 5.015  33.671 1.661  2.185  3.907  H3  4WB 35 
4WB H4  H4  H  0 1 N N N -30.209 4.112  33.651 -0.617 1.253  3.830  H4  4WB 36 
4WB H5  H5  H  0 1 N N N -30.629 1.759  33.004 -1.470 0.246  1.760  H5  4WB 37 
4WB H6  H6  H  0 1 N N N -26.274 -1.314 29.375 1.209  -1.580 0.941  H6  4WB 38 
4WB H7  H7  H  0 1 N N N -25.810 -5.339 30.755 3.152  -5.087 -0.518 H7  4WB 39 
4WB H8  H8  H  0 1 N N N -26.625 -4.650 32.985 3.429  -4.017 -2.718 H8  4WB 40 
4WB H9  H9  H  0 1 N N N -27.276 -2.314 33.402 2.587  -1.734 -3.092 H9  4WB 41 
4WB H10 H10 H  0 1 N N N -25.392 1.613  30.699 2.615  2.020  -2.458 H10 4WB 42 
4WB H11 H11 H  0 1 N N N -24.571 0.099  31.210 1.266  2.636  -1.472 H11 4WB 43 
4WB H12 H12 H  0 1 N N N -26.562 -0.057 34.459 3.646  -0.527 0.132  H12 4WB 44 
4WB H13 H13 H  0 1 N N N -25.234 -0.876 33.570 4.061  0.097  -1.483 H13 4WB 45 
4WB H14 H14 H  0 1 N N N -24.353 0.553  35.368 4.199  1.658  1.138  H14 4WB 46 
4WB H15 H15 H  0 1 N N N -25.191 1.975  34.658 5.588  1.035  0.215  H15 4WB 47 
4WB H16 H16 H  0 1 N N N -23.078 1.930  31.627 3.257  4.134  -1.356 H16 4WB 48 
4WB H17 H17 H  0 1 N N N -24.360 2.863  32.470 2.859  3.440  0.234  H17 4WB 49 
4WB H19 H19 H  0 1 N N N -22.262 1.638  35.197 5.237  3.948  0.807  H19 4WB 50 
4WB H20 H20 H  0 1 N N N -21.662 2.212  33.604 6.523  3.158  -0.137 H20 4WB 51 
4WB H21 H21 H  0 1 N N N -22.982 3.099  34.439 5.566  4.471  -0.863 H21 4WB 52 
4WB H22 H22 H  0 1 N N N -30.536 -0.348 32.626 -0.396 2.020  -1.337 H22 4WB 53 
4WB H23 H23 H  0 1 N N N -29.546 -1.802 32.262 -0.868 0.688  -2.419 H23 4WB 54 
4WB H24 H24 H  0 1 N N N -30.451 1.544  30.408 -1.943 2.582  0.632  H24 4WB 55 
4WB H25 H25 H  0 1 N N N -30.384 1.237  27.796 -4.359 2.264  1.377  H25 4WB 56 
4WB H26 H26 H  0 1 N N N -31.669 0.105  26.244 -5.940 -1.173 -1.259 H26 4WB 57 
4WB H27 H27 H  0 1 N N N -31.000 -1.979 24.477 -8.116 -1.835 -0.950 H27 4WB 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4WB O2  N3  SING N N 1  
4WB N3  C25 SING N N 2  
4WB O1  C25 DOUB N N 3  
4WB C25 C24 SING N N 4  
4WB C24 C23 DOUB Y N 5  
4WB C24 S1  SING Y N 6  
4WB CL1 C11 SING N N 7  
4WB C23 C22 SING Y N 8  
4WB S1  C21 SING Y N 9  
4WB C22 C21 DOUB Y N 10 
4WB C11 C10 DOUB Y N 11 
4WB C11 C12 SING Y N 12 
4WB C10 C9  SING Y N 13 
4WB C21 C20 SING N N 14 
4WB C12 C13 DOUB Y N 15 
4WB C9  C7  SING N N 16 
4WB C9  C14 DOUB Y N 17 
4WB C15 C18 SING N N 18 
4WB C15 C8  SING N N 19 
4WB C7  N1  SING N N 20 
4WB C7  C8  SING N N 21 
4WB C20 N1  SING N N 22 
4WB C13 C14 SING Y N 23 
4WB C18 N2  SING N N 24 
4WB N1  C5  SING N N 25 
4WB C8  C6  SING N N 26 
4WB C8  C16 SING N N 27 
4WB C5  C6  DOUB Y N 28 
4WB C5  C4  SING Y N 29 
4WB C6  C1  SING Y N 30 
4WB C4  C3  DOUB Y N 31 
4WB C1  C2  DOUB Y N 32 
4WB C3  C2  SING Y N 33 
4WB N2  C19 SING N N 34 
4WB N2  C17 SING N N 35 
4WB C16 C17 SING N N 36 
4WB C7  H1  SING N N 37 
4WB C1  H2  SING N N 38 
4WB C2  H3  SING N N 39 
4WB C3  H4  SING N N 40 
4WB C4  H5  SING N N 41 
4WB C10 H6  SING N N 42 
4WB C12 H7  SING N N 43 
4WB C13 H8  SING N N 44 
4WB C14 H9  SING N N 45 
4WB C15 H10 SING N N 46 
4WB C15 H11 SING N N 47 
4WB C16 H12 SING N N 48 
4WB C16 H13 SING N N 49 
4WB C17 H14 SING N N 50 
4WB C17 H15 SING N N 51 
4WB C18 H16 SING N N 52 
4WB C18 H17 SING N N 53 
4WB C19 H19 SING N N 54 
4WB C19 H20 SING N N 55 
4WB C19 H21 SING N N 56 
4WB C20 H22 SING N N 57 
4WB C20 H23 SING N N 58 
4WB C22 H24 SING N N 59 
4WB C23 H25 SING N N 60 
4WB N3  H26 SING N N 61 
4WB O2  H27 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4WB InChI            InChI                1.03  "InChI=1S/C25H26ClN3O2S/c1-28-13-11-25(12-14-28)20-7-2-3-8-21(20)29(23(25)17-5-4-6-18(26)15-17)16-19-9-10-22(32-19)24(30)27-31/h2-10,15,23,31H,11-14,16H2,1H3,(H,27,30)/t23-/m1/s1" 
4WB InChIKey         InChI                1.03  JRHJYZJKMQDKEM-HSZRJFAPSA-N                                                                                                                                                         
4WB SMILES_CANONICAL CACTVS               3.385 "CN1CCC2(CC1)[C@H](N(Cc3sc(cc3)C(=O)NO)c4ccccc24)c5cccc(Cl)c5"                                                                                                                      
4WB SMILES           CACTVS               3.385 "CN1CCC2(CC1)[CH](N(Cc3sc(cc3)C(=O)NO)c4ccccc24)c5cccc(Cl)c5"                                                                                                                       
4WB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)c3ccccc3N([C@@H]2c4cccc(c4)Cl)Cc5ccc(s5)C(=O)NO"                                                                                                                       
4WB SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCC2(CC1)c3ccccc3N(C2c4cccc(c4)Cl)Cc5ccc(s5)C(=O)NO"                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           4WB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "5-[[(2~{R})-2-(3-chlorophenyl)-1'-methyl-spiro[2~{H}-indole-3,4'-piperidine]-1-yl]methyl]-~{N}-oxidanyl-thiophene-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4WB "Create component" 2021-07-07 PDBE 
4WB "Initial release"  2022-07-20 RCSB 
# 
