data_3UB
# 
_chem_comp.id                                    3UB 
_chem_comp.name                                  "propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H20 N O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-10-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        301.275 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3UB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3UBB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3UB O2P  O2P  O 0 1 N N N N N N -0.172 46.672 34.975 -2.143 -1.350 0.550  O2P  3UB 1  
3UB P    P    P 0 1 N N N N N N 0.730  46.998 33.661 -2.599 -0.200 -0.262 P    3UB 2  
3UB C1   C1   C 0 1 N N N N N N 1.520  44.661 32.876 -5.182 -0.792 0.083  C1   3UB 3  
3UB C2   C2   C 0 1 N N N N N N 1.888  43.929 31.643 -5.795 -0.938 1.477  C2   3UB 4  
3UB C3   C3   C 0 1 N N N N N N 1.170  43.768 34.041 -6.255 -0.315 -0.899 C3   3UB 5  
3UB C4   C4   C 0 1 N N R N N N -0.255 48.467 33.147 -1.529 1.239  0.065  C4   3UB 6  
3UB C5   C5   C 0 1 N N N N N N -0.532 48.395 31.615 -2.075 2.460  -0.677 C5   3UB 7  
3UB C6   C6   C 0 1 N N N N N N -0.360 50.845 33.588 0.802  0.673  0.492  C6   3UB 8  
3UB C7   C7   C 0 1 N N N N N N -0.422 53.256 34.002 3.046  0.116  1.081  C7   3UB 9  
3UB NC   NC   N 0 1 N N N N N N 0.515  49.649 33.482 -0.170 0.953  -0.399 NC   3UB 10 
3UB O1C  O1C  O 0 1 N N N N N N -1.571 50.742 33.406 0.550  0.658  1.681  O1C  3UB 11 
3UB O1P  O1P  O 0 1 N N N N N N 0.615  45.716 32.699 -4.119 0.162  0.127  O1P  3UB 12 
3UB O2C  O2C  O 0 1 N N N N N N 0.255  52.079 33.903 2.051  0.409  0.065  O2C  3UB 13 
3UB O3P  O3P  O 0 1 N Y N N N N 2.200  47.489 33.816 -2.522 -0.582 -1.824 O3P  3UB 14 
3UB C71  C71  C 0 1 Y N N N N N -0.034 54.245 32.939 4.374  -0.151 0.421  C71  3UB 15 
3UB C72  C72  C 0 1 Y N N N N N -0.269 55.606 33.104 5.253  0.890  0.189  C72  3UB 16 
3UB C73  C73  C 0 1 Y N N N N N 0.096  56.496 32.110 6.471  0.645  -0.417 C73  3UB 17 
3UB C74  C74  C 0 1 Y N N N N N 0.720  56.023 30.922 6.810  -0.641 -0.792 C74  3UB 18 
3UB C75  C75  C 0 1 Y N N N N N 0.959  54.674 30.757 5.931  -1.683 -0.561 C75  3UB 19 
3UB C76  C76  C 0 1 Y N N N N N 0.587  53.781 31.754 4.716  -1.439 0.051  C76  3UB 20 
3UB H1   H1   H 0 1 N N N N N N 2.460  45.159 33.156 -4.792 -1.756 -0.246 H1   3UB 21 
3UB H2   H2   H 0 1 N N N N N N 2.127  44.649 30.846 -6.606 -1.666 1.443  H2   3UB 22 
3UB H2A  H2A  H 0 1 N N N N N N 2.765  43.296 31.841 -5.031 -1.278 2.176  H2A  3UB 23 
3UB H2B  H2B  H 0 1 N N N N N N 1.044  43.298 31.326 -6.185 0.025  1.805  H2B  3UB 24 
3UB H3   H3   H 0 1 N N N N N N 0.910  44.387 34.913 -6.645 0.648  -0.571 H3   3UB 25 
3UB H3A  H3A  H 0 1 N N N N N N 0.312  43.134 33.772 -5.818 -0.211 -1.892 H3A  3UB 26 
3UB H3B  H3B  H 0 1 N N N N N N 2.033  43.132 34.287 -7.066 -1.043 -0.933 H3B  3UB 27 
3UB H4   H4   H 0 1 N N N N N N -1.226 48.498 33.664 -1.512 1.443  1.136  H4   3UB 28 
3UB H5   H5   H 0 1 N N N N N N -1.120 49.272 31.307 -2.092 2.257  -1.748 H5   3UB 29 
3UB H5A  H5A  H 0 1 N N N N N N 0.423  48.384 31.070 -3.087 2.674  -0.332 H5A  3UB 30 
3UB H5B  H5B  H 0 1 N N N N N N -1.095 47.478 31.387 -1.436 3.321  -0.481 H5B  3UB 31 
3UB H7   H7   H 0 1 N N N N N N -1.497 53.046 33.904 3.141  0.968  1.754  H7   3UB 32 
3UB H7A  H7A  H 0 1 N N N N N N -0.203 53.700 34.984 2.739  -0.763 1.648  H7A  3UB 33 
3UB HNC  HNC  H 0 1 N N N N N N 1.505  49.658 33.623 0.031  0.964  -1.348 HNC  3UB 34 
3UB HO3P HO3P H 0 0 N Y N N N N 2.420  47.547 34.738 -2.807 0.127  -2.417 HO3P 3UB 35 
3UB H72  H72  H 0 1 N N N N N N -0.736 55.968 34.008 4.988  1.896  0.482  H72  3UB 36 
3UB H73  H73  H 0 1 N N N N N N -0.093 57.552 32.236 7.158  1.459  -0.598 H73  3UB 37 
3UB H74  H74  H 0 1 N N N N N N 1.007  56.720 30.149 7.762  -0.833 -1.266 H74  3UB 38 
3UB H75  H75  H 0 1 N N N N N N 1.433  54.314 29.856 6.196  -2.688 -0.854 H75  3UB 39 
3UB H76  H76  H 0 1 N N N N N N 0.773  52.725 31.624 4.029  -2.253 0.232  H76  3UB 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3UB P   O2P  DOUB N N 1  
3UB P   O3P  SING N N 2  
3UB C1  C3   SING N N 3  
3UB C2  C1   SING N N 4  
3UB C4  P    SING N N 5  
3UB C4  NC   SING N N 6  
3UB C5  C4   SING N N 7  
3UB C6  O2C  SING N N 8  
3UB NC  C6   SING N N 9  
3UB O1C C6   DOUB N N 10 
3UB O1P P    SING N N 11 
3UB O1P C1   SING N N 12 
3UB O2C C7   SING N N 13 
3UB C71 C7   SING N N 14 
3UB C71 C72  SING Y N 15 
3UB C73 C72  DOUB Y N 16 
3UB C74 C73  SING Y N 17 
3UB C75 C74  DOUB Y N 18 
3UB C75 C76  SING Y N 19 
3UB C76 C71  DOUB Y N 20 
3UB C1  H1   SING N N 21 
3UB C2  H2   SING N N 22 
3UB C2  H2A  SING N N 23 
3UB C2  H2B  SING N N 24 
3UB C3  H3   SING N N 25 
3UB C3  H3A  SING N N 26 
3UB C3  H3B  SING N N 27 
3UB C4  H4   SING N N 28 
3UB C5  H5   SING N N 29 
3UB C5  H5A  SING N N 30 
3UB C5  H5B  SING N N 31 
3UB C7  H7   SING N N 32 
3UB C7  H7A  SING N N 33 
3UB NC  HNC  SING N N 34 
3UB O3P HO3P SING N N 35 
3UB C72 H72  SING N N 36 
3UB C73 H73  SING N N 37 
3UB C74 H74  SING N N 38 
3UB C75 H75  SING N N 39 
3UB C76 H76  SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3UB SMILES           ACDLabs              12.01 "O=P(OC(C)C)(O)C(NC(=O)OCc1ccccc1)C"                                                                                             
3UB InChI            InChI                1.03  "InChI=1S/C13H20NO5P/c1-10(2)19-20(16,17)11(3)14-13(15)18-9-12-7-5-4-6-8-12/h4-8,10-11H,9H2,1-3H3,(H,14,15)(H,16,17)/t11-/m1/s1" 
3UB InChIKey         InChI                1.03  DRLKMEFBZYZZJV-LLVKDONJSA-N                                                                                                      
3UB SMILES_CANONICAL CACTVS               3.370 "CC(C)O[P](O)(=O)[C@H](C)NC(=O)OCc1ccccc1"                                                                                       
3UB SMILES           CACTVS               3.370 "CC(C)O[P](O)(=O)[CH](C)NC(=O)OCc1ccccc1"                                                                                        
3UB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C[C@H](NC(=O)OCc1ccccc1)[P@](=O)(O)OC(C)C"                                                                                      
3UB SMILES           "OpenEye OEToolkits" 1.7.2 "CC(C)OP(=O)(C(C)NC(=O)OCc1ccccc1)O"                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3UB "SYSTEMATIC NAME" ACDLabs              12.01 "propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate" 
3UB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(1R)-1-(phenylmethoxycarbonylamino)ethyl]-propan-2-yloxy-phosphinic acid"      
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3UB "Create component" 2011-10-31 RCSB 
3UB "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3UB 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
