data_3QB
#

_chem_comp.id                                   3QB
_chem_comp.name                                 LINCOMYCIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H34 N2 O6 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "methyl (5R)-5-[(1R,2R)-2-hydroxy-1-{[(4R)-1-methyl-4-propyl-L-prolyl]amino}propyl]-1-thio-beta-L-arabinopyranoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-10-07
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       406.537
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3QB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4WH5
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3QB  C4   C1   C  0  1  N  N  R  -22.598  -12.065  -16.729  -2.015   0.163  -0.154  C4   3QB   1  
3QB  C14  C2   C  0  1  N  N  N  -19.988   -6.925  -12.986   5.068  -1.186  -0.117  C14  3QB   2  
3QB  C5   C3   C  0  1  N  N  R  -24.360  -13.529  -17.558  -4.392   0.436  -0.307  C5   3QB   3  
3QB  C6   C4   C  0  1  N  N  N  -23.132  -14.057  -20.140  -4.411   3.135   0.575  C6   3QB   4  
3QB  C11  C5   C  0  1  N  N  S  -20.122   -8.817  -14.198   2.753  -0.800   0.176  C11  3QB   5  
3QB  C7   C6   C  0  1  N  N  R  -21.307  -12.030  -15.998  -0.717   0.372  -0.937  C7   3QB   6  
3QB  C8   C7   C  0  1  N  N  R  -20.139  -12.580  -16.844  -0.588   1.846  -1.326  C8   3QB   7  
3QB  C9   C8   C  0  1  N  N  N  -20.105  -14.110  -16.786  -0.420   2.694  -0.064  C9   3QB   8  
3QB  C10  C9   C  0  1  N  N  N  -20.782  -10.156  -14.360   1.579  -0.402  -0.681  C10  3QB   9  
3QB  C12  C10  C  0  1  N  N  N  -18.822   -8.915  -13.469   3.481   0.457   0.685  C12  3QB  10  
3QB  C13  C11  C  0  1  N  N  R  -18.756   -7.701  -12.635   4.925   0.334   0.147  C13  3QB  11  
3QB  N1   N1   N  0  1  N  N  N  -20.909  -10.679  -15.731   0.424  -0.015  -0.104  N1   3QB  12  
3QB  N2   N2   N  0  1  N  N  N  -20.939   -7.911  -13.432   3.727  -1.569  -0.629  N2   3QB  13  
3QB  C3   C12  C  0  1  N  N  R  -23.607  -11.174  -16.103  -2.159  -1.318   0.209  C3   3QB  14  
3QB  C18  C13  C  0  1  N  N  N  -15.298   -8.087  -13.683   8.364   1.127   1.687  C18  3QB  15  
3QB  C17  C14  C  0  1  N  N  N  -16.221   -7.560  -12.581   7.353   0.663   0.636  C17  3QB  16  
3QB  C16  C15  C  0  1  N  N  N  -17.532   -6.943  -12.986   5.936   0.798   1.197  C16  3QB  17  
3QB  C15  C16  C  0  1  N  N  N  -22.196   -7.161  -13.608   3.503  -3.014  -0.488  C15  3QB  18  
3QB  O9   O1   O  0  1  N  N  N  -21.479  -10.653  -13.444   1.674  -0.430  -1.890  O9   3QB  19  
3QB  O8   O2   O  0  1  N  N  N  -20.264  -12.193  -18.037   0.552   2.017  -2.171  O8   3QB  20  
3QB  O5   O3   O  0  1  N  N  N  -23.120  -13.470  -16.875  -3.126   0.566  -0.956  O5   3QB  21  
3QB  O7   O4   O  0  1  N  N  N  -23.680  -11.488  -14.724  -2.140  -2.105  -0.984  O7   3QB  22  
3QB  C2   C17  C  0  1  N  N  S  -24.947  -11.293  -16.687  -3.489  -1.529   0.940  C2   3QB  23  
3QB  O6   O5   O  0  1  N  N  N  -25.890  -10.568  -15.873  -3.666  -2.919   1.217  O6   3QB  24  
3QB  C1   C18  C  0  1  N  N  R  -25.392  -12.693  -16.853  -4.633  -1.033   0.049  C1   3QB  25  
3QB  O4   O6   O  0  1  N  N  N  -26.577  -12.740  -17.570  -5.872  -1.158   0.750  O4   3QB  26  
3QB  S1   S1   S  0  1  N  N  N  -24.147  -12.927  -19.243  -4.401   1.435   1.207  S1   3QB  27  
3QB  H1   H1   H  0  1  N  N  N  -22.410  -11.684  -17.744  -1.989   0.759   0.758  H1   3QB  28  
3QB  H2   H2   H  0  1  N  N  N  -19.774   -6.204  -13.789   5.835  -1.375  -0.868  H2   3QB  29  
3QB  H3   H3   H  0  1  N  N  N  -20.371   -6.390  -12.105   5.296  -1.717   0.807  H3   3QB  30  
3QB  H4   H4   H  0  1  N  N  N  -24.716  -14.567  -17.642  -5.181   0.781  -0.975  H4   3QB  31  
3QB  H5   H5   H  0  1  N  N  N  -22.999  -13.693  -21.170  -3.521   3.302  -0.032  H5   3QB  32  
3QB  H6   H6   H  0  1  N  N  N  -22.150  -14.137  -19.650  -5.301   3.290  -0.035  H6   3QB  33  
3QB  H7   H7   H  0  1  N  N  N  -23.613  -15.046  -20.160  -4.417   3.834   1.411  H7   3QB  34  
3QB  H8   H8   H  0  1  N  N  N  -19.938   -8.392  -15.196   2.413  -1.400   1.020  H8   3QB  35  
3QB  H9   H9   H  0  1  N  N  N  -21.384  -12.608  -15.065  -0.734  -0.242  -1.838  H9   3QB  36  
3QB  H10  H10  H  0  1  N  N  N  -19.205  -12.210  -16.396  -1.485   2.161  -1.859  H10  3QB  37  
3QB  H11  H11  H  0  1  N  N  N  -19.996  -14.435  -15.741   0.478   2.378   0.468  H11  3QB  38  
3QB  H12  H12  H  0  1  N  N  N  -21.041  -14.513  -17.200  -0.328   3.744  -0.341  H12  3QB  39  
3QB  H13  H13  H  0  1  N  N  N  -19.254  -14.480  -17.376  -1.289   2.563   0.580  H13  3QB  40  
3QB  H14  H14  H  0  1  N  N  N  -18.799   -9.817  -12.840   3.006   1.355   0.291  H14  3QB  41  
3QB  H15  H15  H  0  1  N  N  N  -17.982   -8.942  -14.179   3.484   0.477   1.775  H15  3QB  42  
3QB  H16  H16  H  0  1  N  N  N  -18.758   -7.962  -11.566   5.041   0.899  -0.778  H16  3QB  43  
3QB  H17  H17  H  0  1  N  N  N  -20.711  -10.072  -16.501   0.349   0.007   0.863  H17  3QB  44  
3QB  H19  H19  H  0  1  N  N  N  -23.267  -10.134  -16.219  -1.335  -1.616   0.856  H19  3QB  45  
3QB  H20  H20  H  0  1  N  N  N  -14.387   -8.504  -13.230   8.171   2.170   1.941  H20  3QB  46  
3QB  H21  H21  H  0  1  N  N  N  -15.817   -8.872  -14.252   8.267   0.512   2.581  H21  3QB  47  
3QB  H22  H22  H  0  1  N  N  N  -15.027   -7.263  -14.359   9.373   1.031   1.287  H22  3QB  48  
3QB  H23  H23  H  0  1  N  N  N  -16.450   -8.405  -11.916   7.450   1.279  -0.258  H23  3QB  49  
3QB  H24  H24  H  0  1  N  N  N  -15.660   -6.796  -12.023   7.545  -0.379   0.382  H24  3QB  50  
3QB  H25  H25  H  0  1  N  N  N  -17.519   -6.817  -14.079   5.743   1.840   1.452  H25  3QB  51  
3QB  H26  H26  H  0  1  N  N  N  -17.600   -5.957  -12.504   5.839   0.182   2.092  H26  3QB  52  
3QB  H27  H27  H  0  1  N  N  N  -22.411   -6.585  -12.696   2.497  -3.260  -0.828  H27  3QB  53  
3QB  H28  H28  H  0  1  N  N  N  -22.096   -6.473  -14.461   4.232  -3.555  -1.090  H28  3QB  54  
3QB  H29  H29  H  0  1  N  N  N  -23.019   -7.865  -13.799   3.613  -3.298   0.558  H29  3QB  55  
3QB  H30  H30  H  0  1  N  N  N  -20.284  -11.244  -18.062   0.475   1.579  -3.030  H30  3QB  56  
3QB  H31  H31  H  0  1  N  N  N  -22.892  -11.185  -14.288  -2.227  -3.056  -0.828  H31  3QB  57  
3QB  H32  H32  H  0  1  N  N  N  -24.924  -10.828  -17.684  -3.484  -0.968   1.875  H32  3QB  58  
3QB  H33  H33  H  0  1  N  N  N  -25.597   -9.670  -15.771  -4.490  -3.126   1.680  H33  3QB  59  
3QB  H34  H34  H  0  1  N  N  N  -25.551  -13.124  -15.854  -4.668  -1.629  -0.863  H34  3QB  60  
3QB  H35  H35  H  0  1  N  N  N  -27.235  -12.214  -17.131  -6.641  -0.858   0.247  H35  3QB  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3QB  C6   S1   SING  N  N   1  
3QB  S1   C5   SING  N  N   2  
3QB  O8   C8   SING  N  N   3  
3QB  O4   C1   SING  N  N   4  
3QB  C5   O5   SING  N  N   5  
3QB  C5   C1   SING  N  N   6  
3QB  O5   C4   SING  N  N   7  
3QB  C1   C2   SING  N  N   8  
3QB  C8   C9   SING  N  N   9  
3QB  C8   C7   SING  N  N  10  
3QB  C4   C3   SING  N  N  11  
3QB  C4   C7   SING  N  N  12  
3QB  C2   C3   SING  N  N  13  
3QB  C2   O6   SING  N  N  14  
3QB  C3   O7   SING  N  N  15  
3QB  C7   N1   SING  N  N  16  
3QB  N1   C10  SING  N  N  17  
3QB  C10  C11  SING  N  N  18  
3QB  C10  O9   DOUB  N  N  19  
3QB  C11  C12  SING  N  N  20  
3QB  C11  N2   SING  N  N  21  
3QB  C18  C17  SING  N  N  22  
3QB  C15  N2   SING  N  N  23  
3QB  C12  C13  SING  N  N  24  
3QB  N2   C14  SING  N  N  25  
3QB  C16  C13  SING  N  N  26  
3QB  C16  C17  SING  N  N  27  
3QB  C14  C13  SING  N  N  28  
3QB  C4   H1   SING  N  N  29  
3QB  C14  H2   SING  N  N  30  
3QB  C14  H3   SING  N  N  31  
3QB  C5   H4   SING  N  N  32  
3QB  C6   H5   SING  N  N  33  
3QB  C6   H6   SING  N  N  34  
3QB  C6   H7   SING  N  N  35  
3QB  C11  H8   SING  N  N  36  
3QB  C7   H9   SING  N  N  37  
3QB  C8   H10  SING  N  N  38  
3QB  C9   H11  SING  N  N  39  
3QB  C9   H12  SING  N  N  40  
3QB  C9   H13  SING  N  N  41  
3QB  C12  H14  SING  N  N  42  
3QB  C12  H15  SING  N  N  43  
3QB  C13  H16  SING  N  N  44  
3QB  N1   H17  SING  N  N  45  
3QB  C3   H19  SING  N  N  46  
3QB  C18  H20  SING  N  N  47  
3QB  C18  H21  SING  N  N  48  
3QB  C18  H22  SING  N  N  49  
3QB  C17  H23  SING  N  N  50  
3QB  C17  H24  SING  N  N  51  
3QB  C16  H25  SING  N  N  52  
3QB  C16  H26  SING  N  N  53  
3QB  C15  H27  SING  N  N  54  
3QB  C15  H28  SING  N  N  55  
3QB  C15  H29  SING  N  N  56  
3QB  O8   H30  SING  N  N  57  
3QB  O7   H31  SING  N  N  58  
3QB  C2   H32  SING  N  N  59  
3QB  O6   H33  SING  N  N  60  
3QB  C1   H34  SING  N  N  61  
3QB  O4   H35  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3QB  SMILES            ACDLabs               12.01  "O=C(NC(C1OC(SC)C(O)C(O)C1O)C(O)C)C2N(C)CC(CCC)C2"  
3QB  InChI             InChI                 1.03   "InChI=1S/C18H34N2O6S/c1-5-6-10-7-11(20(3)8-10)17(25)19-12(9(2)21)16-14(23)13(22)15(24)18(26-16)27-4/h9-16,18,21-24H,5-8H2,1-4H3,(H,19,25)/t9-,10-,11+,12-,13+,14-,15-,16-,18-/m1/s1"  
3QB  InChIKey          InChI                 1.03   OJMMVQQUTAEWLP-KIDUDLJLSA-N  
3QB  SMILES_CANONICAL  CACTVS                3.385  "CCC[C@@H]1C[C@H](N(C)C1)C(=O)N[C@H]([C@@H](C)O)[C@H]2O[C@H](SC)[C@H](O)[C@@H](O)[C@H]2O"  
3QB  SMILES            CACTVS                3.385  "CCC[CH]1C[CH](N(C)C1)C(=O)N[CH]([CH](C)O)[CH]2O[CH](SC)[CH](O)[CH](O)[CH]2O"  
3QB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCC[C@@H]1C[C@H](N(C1)C)C(=O)N[C@@H]([C@@H]2[C@@H]([C@@H]([C@H]([C@H](O2)SC)O)O)O)[C@@H](C)O"  
3QB  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCC1CC(N(C1)C)C(=O)NC(C2C(C(C(C(O2)SC)O)O)O)C(C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3QB  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl (5R)-5-[(1R,2R)-2-hydroxy-1-{[(4R)-1-methyl-4-propyl-L-prolyl]amino}propyl]-1-thio-beta-L-arabinopyranoside"  
3QB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "(2S,4R)-1-methyl-N-[(1R,2R)-1-[(2R,3R,4S,5R,6R)-6-methylsulfanyl-3,4,5-tris(oxidanyl)oxan-2-yl]-2-oxidanyl-propyl]-4-propyl-pyrrolidine-2-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3QB  "Create component"  2014-10-07  RCSB  
3QB  "Initial release"   2014-11-05  RCSB  
3QB  "Modify synonyms"   2014-11-06  RCSB  
3QB  "Modify synonyms"   2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3QB
_pdbx_chem_comp_synonyms.name        "methyl (5R)-5-[(1R,2R)-2-hydroxy-1-{[(4R)-1-methyl-4-propyl-L-prolyl]amino}propyl]-1-thio-beta-L-arabinopyranoside"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
