data_1RB
#

_chem_comp.id                                   1RB
_chem_comp.name                                 "1-ALPHA-D-RIBOFURANOSYL-BENZIMIAZOLE-5'-PHOSPHATE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H15 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "ALPHA-RIBAZOLE-5'-PHOSPHATE DERIVATIVE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-03-19
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       330.230
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    1RB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1L5K
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1RB  N3      N3    N  0  1  Y  N  N  56.347  41.611  14.094   2.444  -1.847   1.096  N3      1RB   1  
1RB  N1      N1    N  0  1  Y  N  N  56.621  40.906  11.923   1.870  -0.308  -0.340  N1      1RB   2  
1RB  C2      C2    C  0  1  Y  N  N  55.848  40.934  13.053   1.433  -1.222   0.568  C2      1RB   3  
1RB  C7A     C7A   C  0  1  Y  N  N  57.762  41.669  12.327   3.248  -0.387  -0.372  C7A     1RB   4  
1RB  C3A     C3A   C  0  1  Y  N  N  57.564  42.105  13.693   3.601  -1.377   0.562  C3A     1RB   5  
1RB  C4      C4    C  0  1  Y  N  N  58.538  42.896  14.369   4.949  -1.685   0.761  C4      1RB   6  
1RB  C5      C5    C  0  1  Y  N  N  59.714  43.259  13.687   5.911  -1.020   0.053  C5      1RB   7  
1RB  C6      C6    C  0  1  Y  N  N  59.933  42.839  12.324   5.563  -0.039  -0.864  C6      1RB   8  
1RB  C7      C7    C  0  1  Y  N  N  58.968  42.052  11.643   4.239   0.281  -1.076  C7      1RB   9  
1RB  P       P     P  0  1  N  N  N  59.270  39.315   6.026  -4.523  -0.564  -0.112  P       1RB  10  
1RB  O1P     O1P   O  0  1  N  N  N  59.049  38.066   5.233  -4.909   0.385  -1.180  O1P     1RB  11  
1RB  O2P     O2P   O  0  1  N  N  N  59.548  40.466   5.115  -5.171  -2.006  -0.415  O2P     1RB  12  
1RB  O3P     O3P   O  0  1  N  N  N  60.434  39.125   6.952  -5.060  -0.022   1.306  O3P     1RB  13  
1RB  "O5'"   O5*   O  0  1  N  N  N  57.956  39.641   6.898  -2.919  -0.695  -0.064  "O5'"   1RB  14  
1RB  "C5'"   C5*   C  0  1  N  N  N  57.469  38.691   7.845  -2.401   0.628   0.090  "C5'"   1RB  15  
1RB  "C4'"   C4*   C  0  1  N  N  R  57.951  39.095   9.241  -0.873   0.574   0.143  "C4'"   1RB  16  
1RB  "O4'"   O4*   O  0  1  N  N  N  57.405  40.397   9.653  -0.340   0.142  -1.130  "O4'"   1RB  17  
1RB  "C3'"   C3*   C  0  1  N  N  S  57.525  38.167  10.365  -0.285   1.986   0.356  "C3'"   1RB  18  
1RB  "O3'"   O3*   O  0  1  N  N  N  58.402  38.248  11.510   0.038   2.192   1.733  "O3'"   1RB  19  
1RB  "C2'"   C2*   C  0  1  N  N  R  56.152  38.717  10.655   0.996   1.997  -0.508  "C2'"   1RB  20  
1RB  "O2'"   O2*   O  0  1  N  N  N  55.702  38.225  11.919   2.149   2.213   0.308  "O2'"   1RB  21  
1RB  "C1'"   C1*   C  0  1  N  N  S  56.334  40.224  10.584   1.034   0.589  -1.141  "C1'"   1RB  22  
1RB  H2      H2    H  0  1  N  N  N  54.867  40.434  13.122   0.397  -1.402   0.815  H2      1RB  23  
1RB  H4      H4    H  0  1  N  N  N  58.383  43.224  15.411   5.231  -2.447   1.472  H4      1RB  24  
1RB  H5      H5    H  0  1  N  N  N  60.462  43.871  14.219   6.952  -1.261   0.210  H5      1RB  25  
1RB  H6      H6    H  0  1  N  N  N  60.856  43.125  11.792   6.335   0.478  -1.415  H6      1RB  26  
1RB  H7      H7    H  0  1  N  N  N  59.152  41.743  10.600   3.974   1.046  -1.791  H7      1RB  27  
1RB  HOP2    2HOP  H  0  0  N  N  N  59.688  41.259   5.619  -6.130  -1.884  -0.436  HOP2    1RB  28  
1RB  HOP3    3HOP  H  0  0  N  N  N  60.574  39.918   7.456  -4.789  -0.668   1.973  HOP3    1RB  29  
1RB  "H5'1"  1H5*  H  0  0  N  N  N  57.752  37.645   7.583  -2.782   1.062   1.014  "H5'1"  1RB  30  
1RB  "H5'2"  2H5*  H  0  0  N  N  N  56.362  38.569   7.795  -2.714   1.241  -0.755  "H5'2"  1RB  31  
1RB  "H4'"   H4*   H  0  1  N  N  N  59.059  39.083   9.117  -0.545  -0.096   0.938  "H4'"   1RB  32  
1RB  "H3'"   H3*   H  0  1  N  N  N  57.550  37.082  10.108  -0.985   2.747   0.011  "H3'"   1RB  33  
1RB  HO23    3HO2  H  0  0  N  N  N  58.136  37.667  12.213   0.427   3.075   1.799  HO23    1RB  34  
1RB  "H2'"   H2*   H  0  1  N  N  N  55.357  38.403   9.939   0.928   2.762  -1.282  "H2'"   1RB  35  
1RB  HO22    2HO2  H  0  0  N  N  N  54.837  38.572  12.102   2.039   3.080   0.723  HO22    1RB  36  
1RB  "H1'"   H1*   H  0  1  N  N  N  55.385  40.718  10.270   1.407   0.642  -2.164  "H1'"   1RB  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1RB  N3     C2      DOUB  Y  N   1  
1RB  N3     C3A     SING  Y  N   2  
1RB  N1     C2      SING  Y  N   3  
1RB  N1     C7A     SING  Y  N   4  
1RB  N1     "C1'"   SING  N  N   5  
1RB  C2     H2      SING  N  N   6  
1RB  C7A    C3A     DOUB  Y  N   7  
1RB  C7A    C7      SING  Y  N   8  
1RB  C3A    C4      SING  Y  N   9  
1RB  C4     C5      DOUB  Y  N  10  
1RB  C4     H4      SING  N  N  11  
1RB  C5     C6      SING  Y  N  12  
1RB  C5     H5      SING  N  N  13  
1RB  C6     C7      DOUB  Y  N  14  
1RB  C6     H6      SING  N  N  15  
1RB  C7     H7      SING  N  N  16  
1RB  P      O1P     DOUB  N  N  17  
1RB  P      O2P     SING  N  N  18  
1RB  P      O3P     SING  N  N  19  
1RB  P      "O5'"   SING  N  N  20  
1RB  O2P    HOP2    SING  N  N  21  
1RB  O3P    HOP3    SING  N  N  22  
1RB  "O5'"  "C5'"   SING  N  N  23  
1RB  "C5'"  "C4'"   SING  N  N  24  
1RB  "C5'"  "H5'1"  SING  N  N  25  
1RB  "C5'"  "H5'2"  SING  N  N  26  
1RB  "C4'"  "O4'"   SING  N  N  27  
1RB  "C4'"  "C3'"   SING  N  N  28  
1RB  "C4'"  "H4'"   SING  N  N  29  
1RB  "O4'"  "C1'"   SING  N  N  30  
1RB  "C3'"  "O3'"   SING  N  N  31  
1RB  "C3'"  "C2'"   SING  N  N  32  
1RB  "C3'"  "H3'"   SING  N  N  33  
1RB  "O3'"  HO23    SING  N  N  34  
1RB  "C2'"  "O2'"   SING  N  N  35  
1RB  "C2'"  "C1'"   SING  N  N  36  
1RB  "C2'"  "H2'"   SING  N  N  37  
1RB  "O2'"  HO22    SING  N  N  38  
1RB  "C1'"  "H1'"   SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1RB  SMILES            ACDLabs               10.04  "O=P(O)(O)OCC3OC(n2cnc1ccccc12)C(O)C3O"  
1RB  SMILES_CANONICAL  CACTVS                3.341  "O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3ccccc23"  
1RB  SMILES            CACTVS                3.341  "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3ccccc23"  
1RB  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc2c(c1)ncn2[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O"  
1RB  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc2c(c1)ncn2C3C(C(C(O3)COP(=O)(O)O)O)O"  
1RB  InChI             InChI                 1.03   "InChI=1S/C12H15N2O7P/c15-10-9(5-20-22(17,18)19)21-12(11(10)16)14-6-13-7-3-1-2-4-8(7)14/h1-4,6,9-12,15-16H,5H2,(H2,17,18,19)/t9-,10-,11-,12+/m1/s1"  
1RB  InChIKey          InChI                 1.03   YPYFPLLZCVEYCS-KKOKHZNYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1RB  "SYSTEMATIC NAME"  ACDLabs               10.04  "1-(5-O-phosphono-alpha-D-ribofuranosyl)-1H-benzimidazole"  
1RB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5S)-5-(benzimidazol-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1RB  "Create component"   2002-03-19  RCSB  
1RB  "Modify descriptor"  2011-06-04  RCSB  
1RB  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     1RB
_pdbx_chem_comp_synonyms.name        "ALPHA-RIBAZOLE-5'-PHOSPHATE DERIVATIVE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
