data_VKA
#

_chem_comp.id                                   VKA
_chem_comp.name                                 "3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C64 H84 F3 N11 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Protac MS33"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-08-20
_chem_comp.pdbx_modified_date                   2021-10-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       1208.481
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    VKA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7JTD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VKA  C1   C1   C  0  1  Y  N  N   -5.998  -11.428  14.843  -22.194  -4.031  -1.906  C1   VKA    1  
VKA  C2   C2   C  0  1  Y  N  N   -6.372  -12.456  15.704  -22.847  -4.078  -3.087  C2   VKA    2  
VKA  C4   C3   C  0  1  Y  N  N   -4.221  -13.094  15.418  -23.837  -5.846  -2.167  C4   VKA    3  
VKA  C6   C4   C  0  1  Y  N  N   -6.845  -10.253  14.332  -21.172  -3.037  -1.515  C6   VKA    4  
VKA  C7   C5   C  0  1  Y  N  N   -6.722   -9.800  13.040  -21.241  -2.414  -0.268  C7   VKA    5  
VKA  C9   C6   C  0  1  Y  N  N   -8.508   -8.578  14.824  -19.182  -1.790  -2.019  C9   VKA    6  
VKA  C10  C7   C  0  1  Y  N  N   -7.517   -8.719  12.630  -20.284  -1.487   0.091  C10  VKA    7  
VKA  C11  C8   C  0  1  Y  N  N   -8.405   -8.117  13.517  -19.257  -1.175  -0.782  C11  VKA    8  
VKA  C12  C9   C  0  1  N  N  N   -9.279   -6.920  13.036  -18.215  -0.162  -0.383  C12  VKA    9  
VKA  C14  C10  C  0  1  N  N  N   -7.845   -5.585  11.523  -16.053  -0.131   0.741  C14  VKA   10  
VKA  C16  C11  C  0  1  N  N  S   -7.292   -5.291  10.105  -14.914  -0.830   1.436  C16  VKA   11  
VKA  C    C12  C  0  1  Y  N  N   -7.733   -9.633  15.232  -20.130  -2.722  -2.389  C    VKA   12  
VKA  S3   S1   S  0  1  Y  N  N   -4.364  -11.707  14.484  -22.782  -5.362  -0.912  S3   VKA   13  
VKA  N5   N1   N  0  1  Y  N  N   -5.391  -13.351  15.987  -23.711  -5.064  -3.187  N5   VKA   14  
VKA  N13  N2   N  0  1  N  N  N   -8.779   -6.633  11.718  -17.107  -0.842   0.293  N13  VKA   15  
VKA  O15  O1   O  0  1  N  N  N   -7.470   -4.932  12.459  -16.023   1.071   0.585  O15  VKA   16  
VKA  N17  N3   N  0  1  N  N  N   -7.105   -3.708   9.845  -13.895   0.152   1.836  N17  VKA   17  
VKA  C18  C13  C  0  1  N  N  N   -5.894   -3.474   9.418  -13.767   0.129   3.305  C18  VKA   18  
VKA  C19  C14  C  0  1  N  N  R   -5.363   -4.878   9.060  -14.260  -1.279   3.724  C19  VKA   19  
VKA  C20  C15  C  0  1  N  N  N   -6.120   -5.802  10.014  -15.424  -1.515   2.721  C20  VKA   20  
VKA  C21  C16  C  0  1  N  N  N   -8.200   -2.736  10.065  -13.193   0.941   0.999  C21  VKA   21  
VKA  O22  O2   O  0  1  N  N  N   -5.698   -5.168   7.767  -13.231  -2.255   3.550  O22  VKA   22  
VKA  O23  O3   O  0  1  N  N  N   -9.229   -3.148  10.452  -13.445   0.942  -0.187  O23  VKA   23  
VKA  C24  C17  C  0  1  N  N  S   -7.974   -1.244   9.802  -12.096   1.823   1.537  C24  VKA   24  
VKA  C25  C18  C  0  1  N  N  N   -7.758   -0.516  11.185  -12.660   3.213   1.839  C25  VKA   25  
VKA  N26  N4   N  0  1  N  N  N   -9.156   -0.716   9.215  -11.027   1.935   0.541  N26  VKA   26  
VKA  C27  C19  C  0  1  N  N  N   -9.053   -0.557  12.000  -13.104   3.877   0.535  C27  VKA   27  
VKA  C28  C20  C  0  1  N  N  N   -6.640   -1.230  11.962  -13.860   3.083   2.779  C28  VKA   28  
VKA  C29  C21  C  0  1  N  N  N   -7.365    0.929  10.938  -11.580   4.068   2.506  C29  VKA   29  
VKA  C30  C22  C  0  1  N  N  N   -9.192   -0.378   7.749   -9.769   2.219   0.932  C30  VKA   30  
VKA  C31  C23  C  0  1  N  N  N  -10.489    0.192   7.148   -8.670   2.335  -0.092  C31  VKA   31  
VKA  C32  C24  C  0  1  N  N  N  -11.239    1.194   8.149   -7.350   2.662   0.610  C32  VKA   32  
VKA  O32  O4   O  0  1  N  N  N   -8.222   -0.550   7.058   -9.521   2.382   2.108  O32  VKA   33  
VKA  C33  C25  C  0  1  N  N  N  -10.235    2.052   8.996   -6.234   2.779  -0.430  C33  VKA   34  
VKA  C34  C26  C  0  1  N  N  N  -10.660    3.564   9.079   -4.915   3.105   0.273  C34  VKA   35  
VKA  C35  C27  C  0  1  N  N  N   -9.584    4.503   8.499   -3.799   3.223  -0.767  C35  VKA   36  
VKA  C36  C28  C  0  1  N  N  N   -8.910    5.416   9.614   -2.479   3.549  -0.065  C36  VKA   37  
VKA  C37  C29  C  0  1  N  N  N   -8.352    6.712   9.044   -1.363   3.667  -1.105  C37  VKA   38  
VKA  C38  C30  C  0  1  N  N  N   -7.042    7.145   9.736   -0.044   3.993  -0.403  C38  VKA   39  
VKA  C39  C31  C  0  1  N  N  N   -7.296    7.913  11.041    1.072   4.111  -1.443  C39  VKA   40  
VKA  C40  C32  C  0  1  N  N  N   -6.296    7.499  12.185    2.372   4.432  -0.751  C40  VKA   41  
VKA  N41  N5   N  0  1  N  N  N   -6.792    7.295  13.561    3.500   4.583  -1.472  N41  VKA   42  
VKA  O42  O5   O  0  1  N  N  N   -5.158    7.353  11.945    2.402   4.555   0.455  O42  VKA   43  
VKA  C43  C33  C  0  1  N  N  N   -5.845    6.903  14.645    4.763   4.896  -0.800  C43  VKA   44  
VKA  C44  C34  C  0  1  N  N  N   -6.322    7.446  16.018    5.879   5.013  -1.840  C44  VKA   45  
VKA  N45  N6   N  0  1  N  N  N   -7.548    7.113  16.254    7.146   5.327  -1.165  N45  VKA   46  
VKA  C47  C35  C  0  1  N  N  N   -7.932    7.600  17.471    8.188   5.680  -2.140  C47  VKA   47  
VKA  C48  C36  C  0  1  N  N  N   -9.281    7.061  17.938    9.466   6.076  -1.395  C48  VKA   48  
VKA  N49  N7   N  0  1  N  N  N   -9.297    5.695  17.880    9.900   4.958  -0.546  N49  VKA   49  
VKA  C50  C37  C  0  1  N  N  N   -9.054    5.246  16.626    8.858   4.605   0.429  C50  VKA   50  
VKA  C51  C38  C  0  1  N  N  N   -7.697    5.755  16.134    7.581   4.209  -0.316  C51  VKA   51  
VKA  C52  C39  C  0  1  N  N  N  -10.342    5.182  18.421   11.167   5.272   0.129  C52  VKA   52  
VKA  C53  C40  C  0  1  Y  N  N  -11.701    5.641  17.731   11.705   4.029   0.790  C53  VKA   53  
VKA  C54  C41  C  0  1  Y  N  N  -12.419    6.738  18.217   12.550   3.189   0.093  C54  VKA   54  
VKA  C55  C42  C  0  1  Y  N  N  -13.628    7.136  17.595   13.047   2.040   0.705  C55  VKA   55  
VKA  C56  C43  C  0  1  Y  N  N  -14.122    6.424  16.471   12.688   1.746   2.019  C56  VKA   56  
VKA  C57  C44  C  0  1  Y  N  N  -13.402    5.318  15.978   11.842   2.592   2.706  C57  VKA   57  
VKA  C58  C45  C  0  1  Y  N  N  -12.202    4.921  16.595   11.356   3.735   2.095  C58  VKA   58  
VKA  C59  C46  C  0  1  Y  N  N  -14.370    8.352  18.175   13.956   1.133  -0.039  C59  VKA   59  
VKA  C60  C47  C  0  1  Y  N  N  -14.148    8.636  19.511   14.451  -0.015   0.575  C60  VKA   60  
VKA  C61  C48  C  0  1  Y  N  N  -14.768    9.730  20.081   15.299  -0.859  -0.122  C61  VKA   61  
VKA  C62  C49  C  0  1  Y  N  N  -15.656   10.524  19.322   15.654  -0.558  -1.438  C62  VKA   62  
VKA  C63  C50  C  0  1  Y  N  N  -15.859   10.256  17.973   15.159   0.587  -2.046  C63  VKA   63  
VKA  C64  C51  C  0  1  Y  N  N  -15.215    9.151  17.392   14.309   1.426  -1.355  C64  VKA   64  
VKA  N65  N8   N  0  1  N  N  N  -16.270   11.687  19.985   16.510  -1.409  -2.142  N65  VKA   65  
VKA  C66  C52  C  0  1  N  N  N  -17.384   12.347  19.295   17.767  -0.729  -2.483  C66  VKA   66  
VKA  C67  C53  C  0  1  N  N  N  -17.999   13.473  20.104   18.705  -1.716  -3.182  C67  VKA   67  
VKA  N68  N9   N  0  1  N  N  N  -17.042   14.409  20.492   18.050  -2.240  -4.388  N68  VKA   68  
VKA  C69  C54  C  0  1  N  N  N  -16.037   13.854  21.207   16.792  -2.920  -4.048  C69  VKA   69  
VKA  C70  C55  C  0  1  N  N  N  -15.346   12.726  20.424   15.854  -1.933  -3.349  C70  VKA   70  
VKA  C71  C56  C  0  1  N  N  N  -17.605   15.310  21.232   18.949  -3.135  -5.129  C71  VKA   71  
VKA  N72  N10  N  0  1  N  N  N  -14.485    9.916  21.489   15.799  -2.014   0.493  N72  VKA   72  
VKA  C73  C57  C  0  1  N  N  N  -13.174   10.291  21.994   15.088  -2.624   1.462  C73  VKA   73  
VKA  C74  C58  C  0  1  N  N  N  -13.106   10.323  23.558   15.670  -3.767   2.197  C74  VKA   74  
VKA  C75  C59  C  0  1  N  N  N  -13.738    9.221  24.192   16.169  -3.580   3.557  C75  VKA   75  
VKA  N76  N11  N  0  1  N  N  N  -13.753    9.095  25.522   16.694  -4.540   4.266  N76  VKA   76  
VKA  C77  C60  C  0  1  N  N  N  -13.173   10.008  26.288   16.824  -5.792   3.810  C77  VKA   77  
VKA  C78  C61  C  0  1  N  N  N  -12.531   11.134  25.737   16.344  -6.119   2.413  C78  VKA   78  
VKA  C79  C62  C  0  1  N  N  N  -12.484   11.296  24.310   15.733  -4.989   1.608  C79  VKA   79  
VKA  C80  C63  C  0  1  N  N  N  -11.793   12.500  23.657   15.220  -5.212   0.208  C80  VKA   80  
VKA  O85  O6   O  0  1  N  N  N  -12.230   10.454  21.305   13.969  -2.234   1.731  O85  VKA   81  
VKA  O86  O7   O  0  1  N  N  N  -13.219    9.833  27.666   17.320  -6.652   4.508  O86  VKA   82  
VKA  C87  C64  C  0  1  N  N  N   -7.778  -12.604  16.274  -22.607  -3.085  -4.195  C87  VKA   83  
VKA  F82  F1   F  0  1  N  N  N  -11.421   13.393  24.623   16.231  -4.917  -0.712  F82  VKA   84  
VKA  F83  F2   F  0  1  N  N  N  -10.684   12.073  22.978   14.830  -6.548   0.062  F83  VKA   85  
VKA  F84  F3   F  0  1  N  N  N  -12.649   13.099  22.793   14.121  -4.378  -0.024  F84  VKA   86  
VKA  H1   H1   H  0  1  N  N  N   -3.323  -13.682  15.536  -24.508  -6.691  -2.117  H1   VKA   87  
VKA  H2   H2   H  0  1  N  N  N   -6.029  -10.266  12.356  -22.043  -2.656   0.414  H2   VKA   88  
VKA  H3   H3   H  0  1  N  N  N   -9.194   -8.108  15.514  -18.376  -1.545  -2.695  H3   VKA   89  
VKA  H4   H4   H  0  1  N  N  N   -7.439   -8.351  11.618  -20.337  -1.004   1.056  H4   VKA   90  
VKA  H5   H5   H  0  1  N  N  N   -9.153   -6.052  13.700  -17.842   0.345  -1.273  H5   VKA   91  
VKA  H6   H6   H  0  1  N  N  N  -10.342   -7.202  12.999  -18.659   0.569   0.293  H6   VKA   92  
VKA  H7   H7   H  0  1  N  N  N   -7.996   -5.683   9.356  -14.472  -1.572   0.771  H7   VKA   93  
VKA  H8   H8   H  0  1  N  N  N   -7.804   -9.990  16.249  -20.069  -3.203  -3.353  H8   VKA   94  
VKA  H9   H9   H  0  1  N  N  N   -9.091   -7.174  10.937  -17.132  -1.804   0.418  H9   VKA   95  
VKA  H10  H10  H  0  1  N  N  N   -5.282   -3.011  10.206  -12.726   0.269   3.598  H10  VKA   96  
VKA  H11  H11  H  0  1  N  N  N   -5.908   -2.821   8.533  -14.393   0.901   3.752  H11  VKA   97  
VKA  H12  H12  H  0  1  N  N  N   -4.281   -4.935   9.247  -14.624  -1.276   4.752  H12  VKA   98  
VKA  H13  H13  H  0  1  N  N  N   -6.173   -6.822   9.605  -16.339  -1.039   3.073  H13  VKA   99  
VKA  H14  H14  H  0  1  N  N  N   -5.631   -5.827  10.999  -15.581  -2.582   2.557  H14  VKA  100  
VKA  H15  H15  H  0  1  N  N  N   -5.373   -6.032   7.541  -12.442  -2.094   4.084  H15  VKA  101  
VKA  H16  H16  H  0  1  N  N  N   -7.092   -1.096   9.161  -11.695   1.387   2.452  H16  VKA  102  
VKA  H17  H17  H  0  1  N  N  N   -9.968   -0.568   9.779  -11.225   1.805  -0.399  H17  VKA  103  
VKA  H18  H18  H  0  1  N  N  N   -8.897   -0.048  12.963  -13.873   3.268   0.060  H18  VKA  104  
VKA  H19  H19  H  0  1  N  N  N   -9.853   -0.049  11.442  -13.506   4.867   0.750  H19  VKA  105  
VKA  H20  H20  H  0  1  N  N  N   -9.340   -1.604  12.180  -12.249   3.970  -0.135  H20  VKA  106  
VKA  H21  H21  H  0  1  N  N  N   -6.485   -0.727  12.928  -13.529   2.684   3.738  H21  VKA  107  
VKA  H22  H22  H  0  1  N  N  N   -6.926   -2.278  12.137  -14.311   4.063   2.930  H22  VKA  108  
VKA  H23  H23  H  0  1  N  N  N   -5.709   -1.197  11.378  -14.595   2.408   2.339  H23  VKA  109  
VKA  H24  H24  H  0  1  N  N  N   -7.214    1.438  11.901  -10.725   4.160   1.836  H24  VKA  110  
VKA  H25  H25  H  0  1  N  N  N   -6.432    0.961  10.356  -11.982   5.058   2.721  H25  VKA  111  
VKA  H26  H26  H  0  1  N  N  N   -8.164    1.435  10.377  -11.264   3.594   3.435  H26  VKA  112  
VKA  H27  H27  H  0  1  N  N  N  -10.241    0.736   6.224   -8.572   1.391  -0.628  H27  VKA  113  
VKA  H28  H28  H  0  1  N  N  N  -11.165   -0.643   6.912   -8.912   3.130  -0.797  H28  VKA  114  
VKA  H29  H29  H  0  1  N  N  N  -11.875    1.872   7.560   -7.448   3.605   1.147  H29  VKA  115  
VKA  H30  H30  H  0  1  N  N  N  -11.867    0.605   8.834   -7.108   1.867   1.315  H30  VKA  116  
VKA  H31  H31  H  0  1  N  N  N  -10.192    1.641  10.015   -6.136   1.835  -0.966  H31  VKA  117  
VKA  H32  H32  H  0  1  N  N  N   -9.239    1.990   8.533   -6.477   3.574  -1.135  H32  VKA  118  
VKA  H33  H33  H  0  1  N  N  N  -10.829    3.827  10.134   -5.012   4.049   0.809  H33  VKA  119  
VKA  H34  H34  H  0  1  N  N  N  -11.593    3.702   8.513   -4.672   2.310   0.978  H34  VKA  120  
VKA  H35  H35  H  0  1  N  N  N   -8.803    3.893   8.022   -3.701   2.279  -1.304  H35  VKA  121  
VKA  H36  H36  H  0  1  N  N  N  -10.052    5.153   7.745   -4.041   4.018  -1.472  H36  VKA  122  
VKA  H37  H37  H  0  1  N  N  N   -9.666    5.661  10.374   -2.577   4.493   0.471  H37  VKA  123  
VKA  H38  H38  H  0  1  N  N  N   -8.089    4.854  10.082   -2.237   2.754   0.640  H38  VKA  124  
VKA  H39  H39  H  0  1  N  N  N   -8.154    6.570   7.971   -1.266   2.723  -1.641  H39  VKA  125  
VKA  H40  H40  H  0  1  N  N  N   -9.101    7.507   9.176   -1.606   4.462  -1.810  H40  VKA  126  
VKA  H41  H41  H  0  1  N  N  N   -6.449    6.247   9.964   -0.142   4.937   0.134  H41  VKA  127  
VKA  H42  H42  H  0  1  N  N  N   -6.477    7.792   9.049    0.199   3.198   0.303  H42  VKA  128  
VKA  H43  H43  H  0  1  N  N  N   -7.183    8.990  10.845    1.170   3.167  -1.979  H43  VKA  129  
VKA  H44  H44  H  0  1  N  N  N   -8.323    7.708  11.378    0.830   4.906  -2.148  H44  VKA  130  
VKA  H45  H45  H  0  1  N  N  N   -7.763    7.420  13.766    3.476   4.485  -2.437  H45  VKA  131  
VKA  H46  H46  H  0  1  N  N  N   -5.786    5.806  14.692    4.666   5.840  -0.264  H46  VKA  132  
VKA  H47  H47  H  0  1  N  N  N   -4.850    7.315  14.421    5.006   4.101  -0.095  H47  VKA  133  
VKA  H48  H48  H  0  1  N  N  N   -5.680    7.033  16.810    5.977   4.069  -2.376  H48  VKA  134  
VKA  H49  H49  H  0  1  N  N  N   -6.243    8.543  16.017    5.637   5.808  -2.545  H49  VKA  135  
VKA  H51  H51  H  0  1  N  N  N   -7.169    7.324  18.214    8.392   4.823  -2.781  H51  VKA  136  
VKA  H52  H52  H  0  1  N  N  N   -7.998    8.696  17.403    7.848   6.517  -2.749  H52  VKA  137  
VKA  H53  H53  H  0  1  N  N  N   -9.459    7.381  18.975   10.249   6.310  -2.116  H53  VKA  138  
VKA  H54  H54  H  0  1  N  N  N  -10.075    7.460  17.289    9.269   6.950  -0.775  H54  VKA  139  
VKA  H56  H56  H  0  1  N  N  N   -9.844    5.608  15.951    9.199   3.767   1.038  H56  VKA  140  
VKA  H57  H57  H  0  1  N  N  N   -9.050    4.146  16.629    8.655   5.462   1.071  H57  VKA  141  
VKA  H58  H58  H  0  1  N  N  N   -7.587    5.485  15.073    6.798   3.975   0.405  H58  VKA  142  
VKA  H59  H59  H  0  1  N  N  N   -6.907    5.264  16.721    7.778   3.335  -0.937  H59  VKA  143  
VKA  H60  H60  H  0  1  N  N  N  -10.370    5.482  19.479   11.888   5.635  -0.603  H60  VKA  144  
VKA  H61  H61  H  0  1  N  N  N  -10.268    4.087  18.352   10.997   6.040   0.883  H61  VKA  145  
VKA  H62  H62  H  0  1  N  N  N  -12.050    7.285  19.072   12.826   3.421  -0.925  H62  VKA  146  
VKA  H63  H63  H  0  1  N  N  N  -15.044    6.728  15.997   13.069   0.856   2.498  H63  VKA  147  
VKA  H64  H64  H  0  1  N  N  N  -13.773    4.773  15.123   11.562   2.365   3.724  H64  VKA  148  
VKA  H65  H65  H  0  1  N  N  N  -11.656    4.071  16.213   10.695   4.395   2.637  H65  VKA  149  
VKA  H66  H66  H  0  1  N  N  N  -13.497    8.009  20.101   14.175  -0.246   1.594  H66  VKA  150  
VKA  H67  H67  H  0  1  N  N  N  -16.503   10.889  17.380   15.435   0.819  -3.064  H67  VKA  151  
VKA  H68  H68  H  0  1  N  N  N  -15.370    8.918  16.349   13.925   2.317  -1.831  H68  VKA  152  
VKA  H69  H69  H  0  1  N  N  N  -17.013   12.760  18.345   17.559   0.109  -3.148  H69  VKA  153  
VKA  H70  H70  H  0  1  N  N  N  -18.162   11.597  19.090   18.239  -0.361  -1.572  H70  VKA  154  
VKA  H71  H71  H  0  1  N  N  N  -18.763   13.976  19.493   19.627  -1.206  -3.461  H71  VKA  155  
VKA  H72  H72  H  0  1  N  N  N  -18.470   13.050  21.004   18.935  -2.539  -2.506  H72  VKA  156  
VKA  H74  H74  H  0  1  N  N  N  -16.448   13.442  22.141   16.320  -3.288  -4.959  H74  VKA  157  
VKA  H75  H75  H  0  1  N  N  N  -15.295   14.631  21.444   17.001  -3.758  -3.382  H75  VKA  158  
VKA  H76  H76  H  0  1  N  N  N  -14.584   12.267  21.071   14.932  -2.444  -3.070  H76  VKA  159  
VKA  H77  H77  H  0  1  N  N  N  -14.861   13.161  19.538   15.624  -1.110  -4.025  H77  VKA  160  
VKA  H78  H78  H  0  1  N  N  N  -16.855   16.052  21.542   19.232  -3.973  -4.493  H78  VKA  161  
VKA  H79  H79  H  0  1  N  N  N  -18.400   15.810  20.660   18.439  -3.508  -6.017  H79  VKA  162  
VKA  H80  H80  H  0  1  N  N  N  -18.039   14.833  22.123   19.843  -2.586  -5.427  H80  VKA  163  
VKA  H81  H81  H  0  1  N  N  N  -15.227    9.780  22.146   16.658  -2.375   0.221  H81  VKA  164  
VKA  H82  H82  H  0  1  N  N  N  -14.218    8.467  23.585   16.100  -2.596   3.998  H82  VKA  165  
VKA  H83  H83  H  0  1  N  N  N  -11.490   11.113  26.091   17.191  -6.514   1.851  H83  VKA  166  
VKA  H84  H84  H  0  1  N  N  N  -13.038   12.022  26.143   15.599  -6.911   2.491  H84  VKA  167  
VKA  H85  H85  H  0  1  N  N  N   -7.826  -13.504  16.904  -21.869  -3.487  -4.890  H85  VKA  168  
VKA  H86  H86  H  0  1  N  N  N   -8.023  -11.719  16.880  -23.541  -2.899  -4.725  H86  VKA  169  
VKA  H87  H87  H  0  1  N  N  N   -8.500  -12.695  15.449  -22.237  -2.151  -3.772  H87  VKA  170  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VKA  O32  C30  DOUB  N  N    1  
VKA  C31  C30  SING  N  N    2  
VKA  C31  C32  SING  N  N    3  
VKA  C30  N26  SING  N  N    4  
VKA  O22  C19  SING  N  N    5  
VKA  C32  C33  SING  N  N    6  
VKA  C35  C34  SING  N  N    7  
VKA  C35  C36  SING  N  N    8  
VKA  C33  C34  SING  N  N    9  
VKA  C37  C36  SING  N  N   10  
VKA  C37  C38  SING  N  N   11  
VKA  C19  C18  SING  N  N   12  
VKA  C19  C20  SING  N  N   13  
VKA  N26  C24  SING  N  N   14  
VKA  C18  N17  SING  N  N   15  
VKA  C38  C39  SING  N  N   16  
VKA  C24  C21  SING  N  N   17  
VKA  C24  C25  SING  N  N   18  
VKA  N17  C21  SING  N  N   19  
VKA  N17  C16  SING  N  N   20  
VKA  C20  C16  SING  N  N   21  
VKA  C21  O23  DOUB  N  N   22  
VKA  C16  C14  SING  N  N   23  
VKA  C29  C25  SING  N  N   24  
VKA  C39  C40  SING  N  N   25  
VKA  C25  C28  SING  N  N   26  
VKA  C25  C27  SING  N  N   27  
VKA  C14  N13  SING  N  N   28  
VKA  C14  O15  DOUB  N  N   29  
VKA  N13  C12  SING  N  N   30  
VKA  O42  C40  DOUB  N  N   31  
VKA  C40  N41  SING  N  N   32  
VKA  C10  C7   DOUB  Y  N   33  
VKA  C10  C11  SING  Y  N   34  
VKA  C12  C11  SING  N  N   35  
VKA  C7   C6   SING  Y  N   36  
VKA  C11  C9   DOUB  Y  N   37  
VKA  N41  C43  SING  N  N   38  
VKA  C6   C1   SING  N  N   39  
VKA  C6   C    DOUB  Y  N   40  
VKA  S3   C1   SING  Y  N   41  
VKA  S3   C4   SING  Y  N   42  
VKA  C43  C44  SING  N  N   43  
VKA  C9   C    SING  Y  N   44  
VKA  C1   C2   DOUB  Y  N   45  
VKA  C4   N5   DOUB  Y  N   46  
VKA  C2   N5   SING  Y  N   47  
VKA  C2   C87  SING  N  N   48  
VKA  C57  C56  DOUB  Y  N   49  
VKA  C57  C58  SING  Y  N   50  
VKA  C44  N45  SING  N  N   51  
VKA  C51  N45  SING  N  N   52  
VKA  C51  C50  SING  N  N   53  
VKA  N45  C47  SING  N  N   54  
VKA  C56  C55  SING  Y  N   55  
VKA  C58  C53  DOUB  Y  N   56  
VKA  C50  N49  SING  N  N   57  
VKA  C64  C63  DOUB  Y  N   58  
VKA  C64  C59  SING  Y  N   59  
VKA  C47  C48  SING  N  N   60  
VKA  C55  C59  SING  N  N   61  
VKA  C55  C54  DOUB  Y  N   62  
VKA  C53  C54  SING  Y  N   63  
VKA  C53  C52  SING  N  N   64  
VKA  N49  C48  SING  N  N   65  
VKA  N49  C52  SING  N  N   66  
VKA  C63  C62  SING  Y  N   67  
VKA  C59  C60  DOUB  Y  N   68  
VKA  C66  N65  SING  N  N   69  
VKA  C66  C67  SING  N  N   70  
VKA  C62  N65  SING  N  N   71  
VKA  C62  C61  DOUB  Y  N   72  
VKA  C60  C61  SING  Y  N   73  
VKA  N65  C70  SING  N  N   74  
VKA  C61  N72  SING  N  N   75  
VKA  C67  N68  SING  N  N   76  
VKA  C70  C69  SING  N  N   77  
VKA  N68  C69  SING  N  N   78  
VKA  N68  C71  SING  N  N   79  
VKA  O85  C73  DOUB  N  N   80  
VKA  N72  C73  SING  N  N   81  
VKA  C73  C74  SING  N  N   82  
VKA  F84  C80  SING  N  N   83  
VKA  F83  C80  SING  N  N   84  
VKA  C74  C75  SING  N  N   85  
VKA  C74  C79  DOUB  N  N   86  
VKA  C80  C79  SING  N  N   87  
VKA  C80  F82  SING  N  N   88  
VKA  C75  N76  DOUB  N  N   89  
VKA  C79  C78  SING  N  N   90  
VKA  N76  C77  SING  N  N   91  
VKA  C78  C77  SING  N  N   92  
VKA  C77  O86  DOUB  N  N   93  
VKA  C4   H1   SING  N  N   94  
VKA  C7   H2   SING  N  N   95  
VKA  C9   H3   SING  N  N   96  
VKA  C10  H4   SING  N  N   97  
VKA  C12  H5   SING  N  N   98  
VKA  C12  H6   SING  N  N   99  
VKA  C16  H7   SING  N  N  100  
VKA  C    H8   SING  N  N  101  
VKA  N13  H9   SING  N  N  102  
VKA  C18  H10  SING  N  N  103  
VKA  C18  H11  SING  N  N  104  
VKA  C19  H12  SING  N  N  105  
VKA  C20  H13  SING  N  N  106  
VKA  C20  H14  SING  N  N  107  
VKA  O22  H15  SING  N  N  108  
VKA  C24  H16  SING  N  N  109  
VKA  N26  H17  SING  N  N  110  
VKA  C27  H18  SING  N  N  111  
VKA  C27  H19  SING  N  N  112  
VKA  C27  H20  SING  N  N  113  
VKA  C28  H21  SING  N  N  114  
VKA  C28  H22  SING  N  N  115  
VKA  C28  H23  SING  N  N  116  
VKA  C29  H24  SING  N  N  117  
VKA  C29  H25  SING  N  N  118  
VKA  C29  H26  SING  N  N  119  
VKA  C31  H27  SING  N  N  120  
VKA  C31  H28  SING  N  N  121  
VKA  C32  H29  SING  N  N  122  
VKA  C32  H30  SING  N  N  123  
VKA  C33  H31  SING  N  N  124  
VKA  C33  H32  SING  N  N  125  
VKA  C34  H33  SING  N  N  126  
VKA  C34  H34  SING  N  N  127  
VKA  C35  H35  SING  N  N  128  
VKA  C35  H36  SING  N  N  129  
VKA  C36  H37  SING  N  N  130  
VKA  C36  H38  SING  N  N  131  
VKA  C37  H39  SING  N  N  132  
VKA  C37  H40  SING  N  N  133  
VKA  C38  H41  SING  N  N  134  
VKA  C38  H42  SING  N  N  135  
VKA  C39  H43  SING  N  N  136  
VKA  C39  H44  SING  N  N  137  
VKA  N41  H45  SING  N  N  138  
VKA  C43  H46  SING  N  N  139  
VKA  C43  H47  SING  N  N  140  
VKA  C44  H48  SING  N  N  141  
VKA  C44  H49  SING  N  N  142  
VKA  C47  H51  SING  N  N  143  
VKA  C47  H52  SING  N  N  144  
VKA  C48  H53  SING  N  N  145  
VKA  C48  H54  SING  N  N  146  
VKA  C50  H56  SING  N  N  147  
VKA  C50  H57  SING  N  N  148  
VKA  C51  H58  SING  N  N  149  
VKA  C51  H59  SING  N  N  150  
VKA  C52  H60  SING  N  N  151  
VKA  C52  H61  SING  N  N  152  
VKA  C54  H62  SING  N  N  153  
VKA  C56  H63  SING  N  N  154  
VKA  C57  H64  SING  N  N  155  
VKA  C58  H65  SING  N  N  156  
VKA  C60  H66  SING  N  N  157  
VKA  C63  H67  SING  N  N  158  
VKA  C64  H68  SING  N  N  159  
VKA  C66  H69  SING  N  N  160  
VKA  C66  H70  SING  N  N  161  
VKA  C67  H71  SING  N  N  162  
VKA  C67  H72  SING  N  N  163  
VKA  C69  H74  SING  N  N  164  
VKA  C69  H75  SING  N  N  165  
VKA  C70  H76  SING  N  N  166  
VKA  C70  H77  SING  N  N  167  
VKA  C71  H78  SING  N  N  168  
VKA  C71  H79  SING  N  N  169  
VKA  C71  H80  SING  N  N  170  
VKA  N72  H81  SING  N  N  171  
VKA  C75  H82  SING  N  N  172  
VKA  C78  H83  SING  N  N  173  
VKA  C78  H84  SING  N  N  174  
VKA  C87  H85  SING  N  N  175  
VKA  C87  H86  SING  N  N  176  
VKA  C87  H87  SING  N  N  177  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VKA  SMILES            ACDLabs               12.01  "c1(c(ncs1)C)c2ccc(cc2)CNC(=O)C8N(C(=O)C(C(C)(C)C)NC(CCCCCCCCCC(NCCN7CCN(Cc6cc(c5cc(NC(C=3C=NC(=O)CC=3C(F)(F)F)=O)c(N4CCN(CC4)C)cc5)ccc6)CC7)=O)=O)CC(C8)O"  
VKA  InChI             InChI                 1.03   "InChI=1S/C64H84F3N11O7S/c1-43-58(86-42-71-43)46-20-18-44(19-21-46)38-70-61(84)54-36-49(79)41-78(54)62(85)59(63(2,3)4)73-56(81)17-12-10-8-6-7-9-11-16-55(80)68-24-25-75-28-30-76(31-29-75)40-45-14-13-15-47(34-45)48-22-23-53(77-32-26-74(5)27-33-77)52(35-48)72-60(83)50-39-69-57(82)37-51(50)64(65,66)67/h13-15,18-23,34-35,39,42,49,54,59,79H,6-12,16-17,24-33,36-38,40-41H2,1-5H3,(H,68,80)(H,70,84)(H,72,83)(H,73,81)/t49-,54+,59-/m1/s1"  
VKA  InChIKey          InChI                 1.03   OFTPQBXGPMFYDS-QWQPEEPRSA-N  
VKA  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)c2ccc(cc2NC(=O)C3=C(CC(=O)N=C3)C(F)(F)F)c4cccc(CN5CCN(CCNC(=O)CCCCCCCCCC(=O)N[C@H](C(=O)N6C[C@H](O)C[C@H]6C(=O)NCc7ccc(cc7)c8scnc8C)C(C)(C)C)CC5)c4"  
VKA  SMILES            CACTVS                3.385  "CN1CCN(CC1)c2ccc(cc2NC(=O)C3=C(CC(=O)N=C3)C(F)(F)F)c4cccc(CN5CCN(CCNC(=O)CCCCCCCCCC(=O)N[CH](C(=O)N6C[CH](O)C[CH]6C(=O)NCc7ccc(cc7)c8scnc8C)C(C)(C)C)CC5)c4"  
VKA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(scn1)c2ccc(cc2)CNC(=O)[C@@H]3C[C@H](CN3C(=O)[C@H](C(C)(C)C)NC(=O)CCCCCCCCCC(=O)NCCN4CCN(CC4)Cc5cccc(c5)c6ccc(c(c6)NC(=O)C7=C(CC(=O)N=C7)C(F)(F)F)N8CCN(CC8)C)O"  
VKA  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(scn1)c2ccc(cc2)CNC(=O)C3CC(CN3C(=O)C(C(C)(C)C)NC(=O)CCCCCCCCCC(=O)NCCN4CCN(CC4)Cc5cccc(c5)c6ccc(c(c6)NC(=O)C7=C(CC(=O)N=C7)C(F)(F)F)N8CCN(CC8)C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
VKA  "SYSTEMATIC NAME"  ACDLabs               12.01  "3-methyl-N-(11-{[2-(4-{[4'-(4-methylpiperazin-1-yl)-3'-{[6-oxo-4-(trifluoromethyl)-5,6-dihydropyridine-3-carbonyl]amino}[1,1'-biphenyl]-3-yl]methyl}piperazin-1-yl)ethyl]amino}-11-oxoundecanoyl)-L-valyl-(4R)-4-hydroxy-N-{[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methyl}-L-prolinamide"  
VKA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}'-[(2~{S})-3,3-dimethyl-1-[(2~{S},4~{R})-2-[[4-(4-methyl-1,3-thiazol-5-yl)phenyl]methylcarbamoyl]-4-oxidanyl-pyrrolidin-1-yl]-1-oxidanylidene-butan-2-yl]-~{N}-[2-[4-[[3-[4-(4-methylpiperazin-1-yl)-3-[[2-oxidanylidene-4-(trifluoromethyl)-3~{H}-pyridin-5-yl]carbonylamino]phenyl]phenyl]methyl]piperazin-1-yl]ethyl]undecanediamide"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     VKA
_pdbx_chem_comp_synonyms.name        "Protac MS33"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VKA  "Create component"  2020-08-20  RCSB  
VKA  "Modify synonyms"   2021-03-01  PDBE  
VKA  "Initial release"   2021-10-06  RCSB  
##
