data_MKA
#

_chem_comp.id                                   MKA
_chem_comp.name                                 "4-fluoro-N-{(2S)-1-[4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propan-2-yl}benzamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C22 H25 F N4 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-08
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       396.458
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    MKA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6OHQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MKA  C17  C1   C  0  1  Y  N  N  12.082  18.848   2.524   6.962   0.253  -0.264  C17  MKA   1  
MKA  C12  C2   C  0  1  N  N  N  15.419  22.401   2.796   1.705   0.855   1.535  C12  MKA   2  
MKA  C13  C3   C  0  1  N  N  N  16.073  21.036   2.785   2.461   0.909   0.204  C13  MKA   3  
MKA  C3   C4   C  0  1  N  N  N  18.690  25.124  -1.698  -3.362   4.072   0.096  C3   MKA   4  
MKA  C1   C5   C  0  1  N  N  N  17.499  24.013   0.176  -1.086   3.245   0.708  C1   MKA   5  
MKA  C2   C6   C  0  1  N  N  S  17.896  23.929  -1.290  -2.321   2.979  -0.154  C2   MKA   6  
MKA  C11  C7   C  0  1  N  N  N  16.253  23.418   2.027   0.820   2.097   1.664  C11  MKA   7  
MKA  N    N1   N  0  1  N  N  N  16.713  23.836  -2.112  -2.889   1.675   0.195  N    MKA   8  
MKA  CA   C8   C  0  1  N  N  N  16.490  22.659  -2.766  -3.641   1.005  -0.701  CA   MKA   9  
MKA  O    O1   O  0  1  N  N  N  17.133  19.603   5.093   1.621  -1.877   0.117  O    MKA  10  
MKA  CB   C9   C  0  1  Y  N  N  15.301  22.624  -3.595  -4.213  -0.310  -0.349  CB   MKA  11  
MKA  CG1  C10  C  0  1  Y  N  N  14.300  23.553  -3.413  -4.992  -1.006  -1.276  CG1  MKA  12  
MKA  CG2  C11  C  0  1  Y  N  N  15.248  21.622  -4.543  -3.973  -0.865   0.910  CG2  MKA  13  
MKA  CD1  C12  C  0  1  Y  N  N  13.188  23.445  -4.222  -5.524  -2.233  -0.942  CD1  MKA  14  
MKA  C14  C13  C  0  1  N  N  N  16.030  19.349   4.634   2.794  -1.565   0.019  C14  MKA  15  
MKA  C15  C14  C  0  1  Y  N  N  14.190  19.382   3.357   4.651  -0.352  -0.091  C15  MKA  16  
MKA  C16  C15  C  0  1  Y  N  N  13.214  19.634   2.426   5.639   0.621  -0.115  C16  MKA  17  
MKA  C18  C16  C  0  1  Y  N  N  11.935  17.872   3.492   7.306  -1.082  -0.392  C18  MKA  18  
MKA  C19  C17  C  0  1  Y  N  N  14.035  18.420   4.308   4.999  -1.699  -0.209  C19  MKA  19  
MKA  C20  C18  C  0  1  Y  N  N  12.920  17.630   4.425   6.330  -2.058  -0.364  C20  MKA  20  
MKA  C21  C19  C  0  1  N  N  N  16.451  20.664   1.371   1.453   1.004  -0.943  C21  MKA  21  
MKA  C22  C20  C  0  1  N  N  N  17.358  21.741   0.803   0.575   2.242  -0.743  C22  MKA  22  
MKA  C7   C21  C  0  1  Y  N  N  14.125  21.544  -5.337  -4.505  -2.095   1.231  C7   MKA  23  
MKA  C8   C22  C  0  1  Y  N  N  13.109  22.450  -5.169  -5.287  -2.776   0.311  C8   MKA  24  
MKA  F1   F1   F  0  1  N  N  N  12.023  22.354  -5.952  -5.806  -3.982   0.631  F1   MKA  25  
MKA  N1   N2   N  0  1  N  N  N  16.608  22.973   0.692  -0.128   2.142   0.544  N1   MKA  26  
MKA  N3   N3   N  0  1  N  N  N  15.444  19.973   3.556   3.266  -0.305   0.049  N3   MKA  27  
MKA  N4   N4   N  0  1  N  N  N  15.172  18.385   5.112   3.815  -2.429  -0.136  N4   MKA  28  
MKA  O1   O2   O  0  1  N  N  N  17.207  21.676  -2.675  -3.847   1.484  -1.800  O1   MKA  29  
MKA  H1   H1   H  0  1  N  N  N  11.281  19.002   1.817   7.731   1.011  -0.287  H1   MKA  30  
MKA  H2   H2   H  0  1  N  N  N  15.312  22.739   3.837   1.084  -0.040   1.564  H2   MKA  31  
MKA  H3   H3   H  0  1  N  N  N  14.425  22.326   2.330   2.419   0.830   2.358  H3   MKA  32  
MKA  H4   H4   H  0  1  N  N  N  17.040  21.202   3.283   3.113   1.783   0.191  H4   MKA  33  
MKA  H5   H5   H  0  1  N  N  N  19.592  25.197  -1.073  -4.243   3.883  -0.518  H5   MKA  34  
MKA  H6   H6   H  0  1  N  N  N  18.983  25.026  -2.754  -3.646   4.069   1.149  H6   MKA  35  
MKA  H7   H7   H  0  1  N  N  N  18.081  26.031  -1.569  -2.940   5.043  -0.163  H7   MKA  36  
MKA  H8   H8   H  0  1  N  N  N  18.424  23.981   0.771  -0.619   4.180   0.396  H8   MKA  37  
MKA  H9   H9   H  0  1  N  N  N  16.999  24.981   0.328  -1.381   3.317   1.754  H9   MKA  38  
MKA  H10  H10  H  0  1  N  N  N  18.512  23.029  -1.432  -2.038   2.982  -1.207  H10  MKA  39  
MKA  H11  H11  H  0  1  N  N  N  17.179  23.608   2.590   0.270   2.054   2.604  H11  MKA  40  
MKA  H12  H12  H  0  1  N  N  N  15.677  24.351   1.943   1.443   2.991   1.648  H12  MKA  41  
MKA  H13  H13  H  0  1  N  N  N  16.080  24.605  -2.199  -2.725   1.293   1.071  H13  MKA  42  
MKA  H14  H14  H  0  1  N  N  N  14.382  24.332  -2.669  -5.178  -0.584  -2.253  H14  MKA  43  
MKA  H15  H15  H  0  1  N  N  N  16.062  20.921  -4.659  -3.371  -0.331   1.630  H15  MKA  44  
MKA  H16  H16  H  0  1  N  N  N  12.374  24.146  -4.111  -6.126  -2.773  -1.658  H16  MKA  45  
MKA  H17  H17  H  0  1  N  N  N  13.323  20.395   1.668   5.375   1.663  -0.015  H17  MKA  46  
MKA  H18  H18  H  0  1  N  N  N  11.028  17.286   3.518   8.342  -1.361  -0.513  H18  MKA  47  
MKA  H19  H19  H  0  1  N  N  N  12.821  16.875   5.191   6.602  -3.098  -0.464  H19  MKA  48  
MKA  H20  H20  H  0  1  N  N  N  15.543  20.584   0.755   1.986   1.086  -1.891  H20  MKA  49  
MKA  H21  H21  H  0  1  N  N  N  16.980  19.699   1.372   0.827   0.112  -0.954  H21  MKA  50  
MKA  H22  H22  H  0  1  N  N  N  17.716  21.436  -0.191   1.199   3.135  -0.748  H22  MKA  51  
MKA  H23  H23  H  0  1  N  N  N  18.218  21.891   1.473  -0.154   2.304  -1.551  H23  MKA  52  
MKA  H24  H24  H  0  1  N  N  N  14.045  20.773  -6.089  -4.323  -2.523   2.206  H24  MKA  53  
MKA  H26  H26  H  0  1  N  N  N  15.334  17.776   5.888   3.739  -3.395  -0.188  H26  MKA  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MKA  F1   C8   SING  N  N   1  
MKA  C7   C8   DOUB  Y  N   2  
MKA  C7   CG2  SING  Y  N   3  
MKA  C8   CD1  SING  Y  N   4  
MKA  CG2  CB   DOUB  Y  N   5  
MKA  CD1  CG1  DOUB  Y  N   6  
MKA  CB   CG1  SING  Y  N   7  
MKA  CB   CA   SING  N  N   8  
MKA  CA   O1   DOUB  N  N   9  
MKA  CA   N    SING  N  N  10  
MKA  N    C2   SING  N  N  11  
MKA  C3   C2   SING  N  N  12  
MKA  C2   C1   SING  N  N  13  
MKA  C1   N1   SING  N  N  14  
MKA  N1   C22  SING  N  N  15  
MKA  N1   C11  SING  N  N  16  
MKA  C22  C21  SING  N  N  17  
MKA  C21  C13  SING  N  N  18  
MKA  C11  C12  SING  N  N  19  
MKA  C16  C17  DOUB  Y  N  20  
MKA  C16  C15  SING  Y  N  21  
MKA  C17  C18  SING  Y  N  22  
MKA  C13  C12  SING  N  N  23  
MKA  C13  N3   SING  N  N  24  
MKA  C15  N3   SING  N  N  25  
MKA  C15  C19  DOUB  Y  N  26  
MKA  C18  C20  DOUB  Y  N  27  
MKA  N3   C14  SING  N  N  28  
MKA  C19  C20  SING  Y  N  29  
MKA  C19  N4   SING  N  N  30  
MKA  C14  O    DOUB  N  N  31  
MKA  C14  N4   SING  N  N  32  
MKA  C17  H1   SING  N  N  33  
MKA  C12  H2   SING  N  N  34  
MKA  C12  H3   SING  N  N  35  
MKA  C13  H4   SING  N  N  36  
MKA  C3   H5   SING  N  N  37  
MKA  C3   H6   SING  N  N  38  
MKA  C3   H7   SING  N  N  39  
MKA  C1   H8   SING  N  N  40  
MKA  C1   H9   SING  N  N  41  
MKA  C2   H10  SING  N  N  42  
MKA  C11  H11  SING  N  N  43  
MKA  C11  H12  SING  N  N  44  
MKA  N    H13  SING  N  N  45  
MKA  CG1  H14  SING  N  N  46  
MKA  CG2  H15  SING  N  N  47  
MKA  CD1  H16  SING  N  N  48  
MKA  C16  H17  SING  N  N  49  
MKA  C18  H18  SING  N  N  50  
MKA  C20  H19  SING  N  N  51  
MKA  C21  H20  SING  N  N  52  
MKA  C21  H21  SING  N  N  53  
MKA  C22  H22  SING  N  N  54  
MKA  C22  H23  SING  N  N  55  
MKA  C7   H24  SING  N  N  56  
MKA  N4   H26  SING  N  N  57  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MKA  SMILES            ACDLabs               12.01  "c4ccc3c(N(C2CCN(CC(C)NC(=O)c1ccc(cc1)F)CC2)C(=O)N3)c4"  
MKA  InChI             InChI                 1.03   "InChI=1S/C22H25FN4O2/c1-15(24-21(28)16-6-8-17(23)9-7-16)14-26-12-10-18(11-13-26)27-20-5-3-2-4-19(20)25-22(27)29/h2-9,15,18H,10-14H2,1H3,(H,24,28)(H,25,29)/t15-/m0/s1"  
MKA  InChIKey          InChI                 1.03   KKKBWVASRHMJPO-HNNXBMFYSA-N  
MKA  SMILES_CANONICAL  CACTVS                3.385  "C[C@@H](CN1CCC(CC1)N2C(=O)Nc3ccccc23)NC(=O)c4ccc(F)cc4"  
MKA  SMILES            CACTVS                3.385  "C[CH](CN1CCC(CC1)N2C(=O)Nc3ccccc23)NC(=O)c4ccc(F)cc4"  
MKA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@H](CN1CCC(CC1)N2c3ccccc3NC2=O)NC(=O)c4ccc(cc4)F"  
MKA  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(CN1CCC(CC1)N2c3ccccc3NC2=O)NC(=O)c4ccc(cc4)F"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MKA  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-fluoro-N-{(2S)-1-[4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl]propan-2-yl}benzamide"  
MKA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "4-fluoranyl-~{N}-[(2~{S})-1-[4-(2-oxidanylidene-3~{H}-benzimidazol-1-yl)piperidin-1-yl]propan-2-yl]benzamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MKA  "Create component"  2019-04-08  RCSB  
MKA  "Initial release"   2020-02-19  RCSB  
##
